Wall clock time and date at job start Mon Mar 30 2020 07:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47158 * 2 1 4 4 C 1.34512 * 125.79309 * 90.00483 * 3 2 1 5 5 C 1.41384 * 106.84499 * 179.97438 * 4 3 2 6 6 C 1.34514 * 106.83638 * 359.97438 * 5 4 3 7 7 C 1.50703 * 125.78833 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.70101 * 19.64034 * 7 6 5 9 9 C 1.53193 * 109.58635 * 259.29216 * 7 6 5 10 10 C 1.53044 * 109.31355 * 185.57598 * 9 7 6 11 11 H 1.08996 * 109.45777 * 301.35552 * 10 9 7 12 12 C 1.53001 * 109.45729 * 181.38201 * 10 9 7 13 13 C 1.53349 * 109.60726 * 61.37099 * 10 9 7 14 14 C 1.53192 * 109.14874 * 298.71142 * 13 10 9 15 15 N 1.46920 * 109.58738 * 139.99858 * 7 6 5 16 16 C 1.36931 * 120.63405 * 353.37454 * 15 7 6 17 17 H 1.08000 * 119.99915 * 327.25904 * 16 15 7 18 18 C 1.38812 * 120.00031 * 147.26575 * 16 15 7 19 19 N 1.31613 * 120.00276 * 342.44955 * 18 16 15 20 20 Si 1.86799 * 119.99884 * 162.45231 * 18 16 15 21 21 H 1.48502 * 109.47300 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47086 * 119.99759 * 20 18 16 23 23 H 1.48500 * 109.47157 * 239.99828 * 20 18 16 24 24 O 1.34298 * 108.42540 * 0.26387 * 6 5 4 25 25 H 1.09002 * 109.46956 * 59.99712 * 1 2 3 26 26 H 1.09001 * 109.47105 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47010 * 300.00358 * 1 2 3 28 28 H 1.09003 * 109.46636 * 240.00034 * 2 1 3 29 29 H 1.09002 * 109.46956 * 120.00287 * 2 1 3 30 30 H 1.07998 * 126.57397 * 359.93548 * 4 3 2 31 31 H 1.07994 * 126.58200 * 180.02562 * 5 4 3 32 32 H 1.09004 * 109.49133 * 305.52598 * 9 7 6 33 33 H 1.08994 * 109.49935 * 65.62096 * 9 7 6 34 34 H 1.08996 * 109.46904 * 60.00122 * 12 10 9 35 35 H 1.09000 * 109.46955 * 180.02562 * 12 10 9 36 36 H 1.08997 * 109.47126 * 299.99670 * 12 10 9 37 37 H 1.08999 * 109.68664 * 178.75070 * 13 10 9 38 38 H 1.09001 * 109.47424 * 58.54559 * 13 10 9 39 39 H 1.09000 * 109.59040 * 294.72298 * 14 13 10 40 40 H 1.08999 * 109.59044 * 174.43388 * 14 13 10 41 41 H 0.96996 * 120.00416 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2947 2.1625 1.0911 5 6 2.7410 3.4230 0.6320 6 6 2.7252 3.3760 -0.7122 7 6 3.1229 4.4967 -1.6380 8 1 3.7428 5.2146 -1.1008 9 6 1.8668 5.1969 -2.1659 10 6 2.2701 6.2406 -3.2101 11 1 2.9513 6.9617 -2.7585 12 6 1.0210 6.9659 -3.7146 13 6 2.9677 5.5480 -4.3871 14 6 4.2349 4.8516 -3.8809 15 7 3.8745 3.9517 -2.7767 16 6 4.2327 2.6305 -2.8081 17 1 4.4628 2.1114 -1.8894 18 6 4.3003 1.9584 -4.0208 19 7 3.7045 2.4564 -5.0834 20 14 5.2369 0.3469 -4.1445 21 1 5.8121 0.0056 -2.8186 22 1 4.3115 -0.7316 -4.5755 23 1 6.3320 0.4858 -5.1378 24 8 2.2900 2.1628 -1.0895 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.1848 1.8543 2.1203 31 1 3.0383 4.2622 1.2432 32 1 1.2054 4.4612 -2.6235 33 1 1.3503 5.6881 -1.3413 34 1 0.5257 7.4604 -2.8791 35 1 1.3080 7.7090 -4.4587 36 1 0.3395 6.2448 -4.1659 37 1 3.2358 6.2874 -5.1417 38 1 2.2961 4.8087 -4.8237 39 1 4.9455 5.5983 -3.5266 40 1 4.6833 4.2754 -4.6902 41 1 3.7514 1.9866 -5.9307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174448102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:03 Heat of formation + Delta-G solvation = 1.748188 kcal Electronic energy + Delta-G solvation = -21114.229811 eV Core-core repulsion = 18188.057990 eV Total energy + Delta-G solvation = -2926.171821 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.33298 -39.43832 -35.54106 -35.01125 -33.96590 -32.95212 -31.83179 -29.16949 -28.41536 -25.84596 -24.86017 -23.53730 -22.54932 -22.25126 -20.73146 -20.52486 -18.83701 -17.51212 -16.70104 -16.48668 -15.83303 -15.54784 -15.45748 -15.05226 -14.90115 -14.68567 -14.38878 -13.90376 -13.83696 -13.43099 -13.20784 -13.10183 -12.93540 -12.80022 -12.69686 -12.53897 -12.40156 -12.17017 -12.11987 -11.87782 -11.78445 -11.59010 -11.17670 -10.99420 -10.57736 -10.41311 -9.05335 -8.50640 -7.82717 -5.31825 1.01725 1.39041 1.41805 1.51219 1.83694 2.29599 2.52149 3.31911 3.60063 3.79091 4.01703 4.08234 4.16503 4.22216 4.31442 4.37592 4.40610 4.53748 4.60545 4.65117 4.79937 4.85388 4.92112 4.95371 4.96917 4.98712 5.05960 5.14707 5.23039 5.24264 5.26808 5.29549 5.43294 5.46249 5.51023 5.66999 5.72317 5.85581 5.90861 6.44756 6.61436 7.19275 7.84676 8.39172 9.20617 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013208 B = 0.010179 C = 0.006729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.411999 B = 2750.206779 C = 4159.922125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 C -0.049 4.049 4 C -0.215 4.215 5 C -0.232 4.232 6 C 0.005 3.995 7 C 0.233 3.767 8 H 0.071 0.929 9 C -0.110 4.110 10 C -0.082 4.082 11 H 0.076 0.924 12 C -0.135 4.135 13 C -0.110 4.110 14 C 0.159 3.841 15 N -0.601 5.601 16 C -0.231 4.231 17 H 0.047 0.953 18 C -0.038 4.038 19 N -0.916 5.916 20 Si 0.947 3.053 21 H -0.276 1.276 22 H -0.293 1.293 23 H -0.287 1.287 24 O -0.169 6.169 25 H 0.034 0.966 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.027 0.973 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.060 0.940 38 H 0.035 0.965 39 H 0.016 0.984 40 H 0.060 0.940 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.321 3.107 9.557 11.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 C -0.099 4.099 4 C -0.234 4.234 5 C -0.251 4.251 6 C -0.046 4.046 7 C 0.128 3.872 8 H 0.089 0.911 9 C -0.149 4.149 10 C -0.100 4.100 11 H 0.095 0.905 12 C -0.193 4.193 13 C -0.149 4.149 14 C 0.034 3.966 15 N -0.325 5.325 16 C -0.362 4.362 17 H 0.064 0.936 18 C -0.235 4.235 19 N -0.561 5.561 20 Si 0.776 3.224 21 H -0.201 1.201 22 H -0.220 1.220 23 H -0.213 1.213 24 O -0.064 6.064 25 H 0.054 0.946 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.187 0.813 31 H 0.181 0.819 32 H 0.046 0.954 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.034 0.966 40 H 0.078 0.922 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.358 2.938 9.104 10.965 hybrid contribution 0.551 -1.032 -0.488 1.268 sum -4.808 1.906 8.616 10.049 Atomic orbital electron populations 1.21724 0.92985 1.03173 1.01823 1.20187 0.97223 0.86513 1.04170 1.23208 1.05230 0.96629 0.84867 1.21698 1.07947 0.94034 0.99709 1.21739 1.09835 1.00562 0.93008 1.22686 1.01682 0.85720 0.94548 1.19604 0.91978 0.88923 0.86734 0.91149 1.21966 0.96873 0.97412 0.98640 1.21085 0.97661 0.96010 0.95264 0.90525 1.21752 0.96605 0.99573 1.01331 1.21839 0.98186 0.97885 0.96994 1.20830 0.94272 0.90818 0.90654 1.44391 1.62150 1.06178 1.19781 1.18999 1.37953 0.87094 0.92129 0.93559 1.25622 1.00645 0.99966 0.97220 1.70140 1.44669 1.40651 1.00642 0.85517 0.78453 0.80996 0.77415 1.20072 1.21988 1.21337 1.84303 1.63977 1.22879 1.35256 0.94631 0.89559 0.91339 0.91904 0.86596 0.81262 0.81911 0.95370 0.90594 0.91342 0.91641 0.94382 0.92154 0.94616 0.96634 0.92199 0.94422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.89 71.98 0.71 -2.71 16 2 C -0.04 -1.27 6.47 29.85 0.19 -1.08 16 3 C -0.05 -1.83 6.58 24.83 0.16 -1.67 16 4 C -0.22 -7.15 10.81 22.19 0.24 -6.91 16 5 C -0.23 -8.36 10.80 22.19 0.24 -8.12 16 6 C 0.00 0.21 5.03 24.83 0.13 0.34 16 7 C 0.23 10.03 3.34 44.23 0.15 10.18 16 8 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 9 C -0.11 -4.21 4.64 30.67 0.14 -4.07 16 10 C -0.08 -2.82 2.68 -10.66 -0.03 -2.85 16 11 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 12 C -0.14 -3.82 9.19 71.98 0.66 -3.16 16 13 C -0.11 -4.61 5.39 30.78 0.17 -4.44 16 14 C 0.16 7.63 5.67 86.36 0.49 8.12 16 15 N -0.60 -30.65 2.97 -679.36 -2.01 -32.67 16 16 C -0.23 -13.09 7.58 84.03 0.64 -12.46 16 17 H 0.05 2.75 6.65 -2.91 -0.02 2.73 16 18 C -0.04 -2.18 4.92 84.86 0.42 -1.77 16 19 N -0.92 -54.12 11.31 21.65 0.24 -53.88 16 20 Si 0.95 46.65 29.59 68.60 2.03 48.68 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 22 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 24 O -0.17 -8.01 8.53 -2.52 -0.02 -8.03 16 25 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.17 4.29 8.06 -2.91 -0.02 4.27 16 31 H 0.16 4.81 8.06 -2.91 -0.02 4.79 16 32 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16 40 H 0.06 3.29 5.76 -2.39 -0.01 3.27 16 41 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -66.57 325.67 5.52 -61.05 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.98 Total: 15.45 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 4.31 Total: -30.60 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -1.77 Total: -86.55 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.02 Total: -8.03 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -66.57 5.52 -61.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174448102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.795 kcal (2) G-P(sol) polarization free energy of solvation -66.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds