Wall clock time and date at job start Mon Mar 30 2020 07:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50709 * 109.47132 * 2 1 4 4 C 1.34512 * 125.78660 * 90.00108 * 3 2 1 5 5 C 1.41390 * 106.83780 * 179.79603 * 4 3 2 6 6 C 1.34513 * 106.83644 * 0.37049 * 5 4 3 7 7 C 1.50704 * 125.78591 * 179.89010 * 6 5 4 8 8 H 1.08999 * 109.69898 * 19.36327 * 7 6 5 9 9 C 1.53628 * 109.74080 * 258.81610 * 7 6 5 10 10 C 1.53038 * 109.23864 * 295.11867 * 9 7 6 11 11 H 1.08998 * 109.46328 * 58.53502 * 10 9 7 12 12 C 1.52999 * 109.44940 * 178.49828 * 10 9 7 13 13 C 1.53041 * 109.53739 * 298.51173 * 10 9 7 14 14 C 1.53185 * 109.31523 * 61.36485 * 13 10 9 15 15 N 1.46918 * 109.58794 * 139.71475 * 7 6 5 16 16 C 1.36935 * 120.63514 * 246.20368 * 15 7 6 17 17 H 1.08006 * 119.99849 * 332.04217 * 16 15 7 18 18 C 1.38816 * 120.00322 * 152.04378 * 16 15 7 19 19 N 1.31621 * 119.99745 * 342.64284 * 18 16 15 20 20 Si 1.86797 * 119.99953 * 162.64790 * 18 16 15 21 21 H 1.48494 * 109.47007 * 269.99707 * 20 18 16 22 22 H 1.48502 * 109.47242 * 29.99852 * 20 18 16 23 23 H 1.48505 * 109.46823 * 149.99923 * 20 18 16 24 24 O 1.34298 * 125.78638 * 270.02982 * 3 2 1 25 25 H 1.09003 * 109.46932 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47533 * 299.99479 * 1 2 3 27 27 H 1.09001 * 109.47587 * 59.99816 * 1 2 3 28 28 H 1.09003 * 109.47533 * 240.00521 * 2 1 3 29 29 H 1.09001 * 109.47587 * 120.00183 * 2 1 3 30 30 H 1.07995 * 126.58303 * 0.03852 * 4 3 2 31 31 H 1.07998 * 126.57688 * 180.23727 * 5 4 3 32 32 H 1.08996 * 109.63255 * 175.12855 * 9 7 6 33 33 H 1.08998 * 109.45712 * 55.00489 * 9 7 6 34 34 H 1.08994 * 109.47672 * 180.02562 * 12 10 9 35 35 H 1.09004 * 109.47155 * 300.06087 * 12 10 9 36 36 H 1.09002 * 109.47376 * 60.05567 * 12 10 9 37 37 H 1.09005 * 109.49581 * 301.40969 * 13 10 9 38 38 H 1.09004 * 109.49480 * 181.32290 * 13 10 9 39 39 H 1.08999 * 109.58920 * 185.57604 * 14 13 10 40 40 H 1.09004 * 109.58595 * 65.15421 * 14 13 10 41 41 H 0.96998 * 119.99352 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2945 2.1625 1.0912 5 6 2.7448 3.4217 0.6320 6 6 2.7229 3.3768 -0.7122 7 6 3.1192 4.4981 -1.6379 8 1 3.7391 5.2161 -1.1010 9 6 1.8609 5.1992 -2.1721 10 6 1.0662 4.2186 -3.0375 11 1 0.7993 3.3442 -2.4439 12 6 -0.2073 4.9004 -3.5416 13 6 1.9184 3.7832 -4.2318 14 6 3.1759 3.0707 -3.7241 15 7 3.8702 3.9540 -2.7773 16 6 5.1937 4.2596 -2.9506 17 1 5.5856 5.1941 -2.5767 18 6 6.0318 3.3686 -3.6067 19 7 5.6674 2.1130 -3.7593 20 14 7.6767 3.9513 -4.2731 21 1 7.5040 4.4304 -5.6680 22 1 8.1881 5.0605 -3.4284 23 1 8.6457 2.8262 -4.2526 24 8 2.2935 2.1615 -1.0894 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.1860 1.8539 2.1204 31 1 3.0462 4.2594 1.2434 32 1 2.1493 6.0624 -2.7718 33 1 1.2449 5.5273 -1.3348 34 1 -0.7739 4.2022 -4.1576 35 1 -0.8144 5.2105 -2.6911 36 1 0.0593 5.7746 -4.1356 37 1 2.2062 4.6599 -4.8121 38 1 1.3434 3.1031 -4.8603 39 1 3.8332 2.8465 -4.5641 40 1 2.8938 2.1456 -3.2212 41 1 6.2532 1.4903 -4.2175 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174448126.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:09 Heat of formation + Delta-G solvation = 12.932222 kcal Electronic energy + Delta-G solvation = -21170.616776 eV Core-core repulsion = 18244.929931 eV Total energy + Delta-G solvation = -2925.686845 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.81638 -37.81625 -33.85369 -33.73341 -32.38953 -31.26216 -30.02719 -27.79417 -26.88750 -24.19425 -23.34929 -21.91192 -21.07858 -20.89910 -19.47623 -18.73052 -16.85262 -15.74553 -15.33205 -14.84652 -14.23593 -14.03934 -13.99979 -13.65878 -13.32634 -13.05237 -12.69415 -12.47443 -12.35755 -12.04535 -12.03326 -11.66572 -11.49638 -11.29318 -11.16728 -10.96271 -10.74861 -10.71579 -10.45666 -10.35519 -10.09020 -9.87469 -9.47929 -9.34329 -9.08710 -8.46476 -7.49329 -6.74577 -5.80964 -3.25304 2.53645 3.32376 3.37816 3.43900 3.44959 3.70670 4.46656 5.09876 5.24059 5.34426 5.43103 5.44350 5.45825 5.50326 5.52936 5.69851 5.77973 5.79761 5.93865 6.03538 6.06583 6.11544 6.19551 6.27943 6.30338 6.36997 6.43270 6.46507 6.59333 6.66430 6.68715 6.86094 6.91062 6.94967 7.03444 7.28833 7.46540 7.75272 7.80820 8.06014 8.41255 9.17059 9.78616 10.35458 11.25720 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.007739 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.677997 B = 3616.954041 C = 4306.735258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 C -0.040 4.040 4 C -0.211 4.211 5 C -0.249 4.249 6 C 0.029 3.971 7 C 0.236 3.764 8 H 0.090 0.910 9 C -0.118 4.118 10 C -0.088 4.088 11 H 0.066 0.934 12 C -0.143 4.143 13 C -0.134 4.134 14 C 0.167 3.833 15 N -0.572 5.572 16 C -0.261 4.261 17 H 0.069 0.931 18 C 0.008 3.992 19 N -0.893 5.893 20 Si 0.904 3.096 21 H -0.286 1.286 22 H -0.278 1.278 23 H -0.291 1.291 24 O -0.148 6.148 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.085 0.915 40 H 0.031 0.969 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.401 0.247 4.876 11.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 C -0.091 4.091 4 C -0.231 4.231 5 C -0.269 4.269 6 C -0.026 4.026 7 C 0.127 3.873 8 H 0.108 0.892 9 C -0.157 4.157 10 C -0.106 4.106 11 H 0.084 0.916 12 C -0.201 4.201 13 C -0.173 4.173 14 C 0.042 3.958 15 N -0.291 5.291 16 C -0.390 4.390 17 H 0.086 0.914 18 C -0.192 4.192 19 N -0.536 5.536 20 Si 0.734 3.266 21 H -0.213 1.213 22 H -0.203 1.203 23 H -0.218 1.218 24 O -0.042 6.042 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.049 0.951 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.299 0.001 4.450 11.220 hybrid contribution 1.031 0.173 0.078 1.048 sum -9.269 0.174 4.529 10.317 Atomic orbital electron populations 1.21761 0.94676 1.01514 1.02363 1.19930 0.95687 0.88599 1.03434 1.22274 1.06276 0.95275 0.85256 1.21306 1.08333 0.95067 0.98365 1.21401 1.11912 0.99346 0.94256 1.24278 0.97590 0.85886 0.94837 1.19582 0.92129 0.88837 0.86778 0.89245 1.22114 0.96638 0.98283 0.98685 1.21048 0.94176 0.98085 0.97296 0.91573 1.21847 0.97678 1.00257 1.00273 1.22200 0.98423 1.00282 0.96420 1.20928 0.90244 0.90737 0.93923 1.44241 1.07404 1.55703 1.21748 1.19216 0.84571 1.00000 1.35221 0.91368 1.25099 0.97722 0.94540 1.01837 1.70075 1.37455 1.01877 1.44167 0.86269 0.83402 0.77735 0.79210 1.21322 1.20336 1.21766 1.84194 1.64067 1.22357 1.33623 0.92290 0.92586 0.92355 0.90361 0.89860 0.84952 0.84711 0.91415 0.92876 0.93392 0.93581 0.93160 0.92840 0.93513 0.89646 0.95062 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.89 37.15 0.37 -1.38 16 2 C -0.04 -0.56 6.47 -27.88 -0.18 -0.74 16 3 C -0.04 -0.75 6.57 -35.62 -0.23 -0.99 16 4 C -0.21 -3.81 10.81 -39.70 -0.43 -4.24 16 5 C -0.25 -4.82 10.80 -39.70 -0.43 -5.25 16 6 C 0.03 0.61 5.52 -35.62 -0.20 0.41 16 7 C 0.24 5.03 3.16 -68.53 -0.22 4.81 16 8 H 0.09 1.86 7.93 -51.93 -0.41 1.45 16 9 C -0.12 -2.12 4.85 -26.39 -0.13 -2.25 16 10 C -0.09 -1.56 2.50 -90.58 -0.23 -1.78 16 11 H 0.07 1.27 6.39 -51.93 -0.33 0.94 16 12 C -0.14 -2.08 9.19 37.16 0.34 -1.73 16 13 C -0.13 -2.66 5.36 -26.61 -0.14 -2.80 16 14 C 0.17 4.05 4.87 -3.71 -0.02 4.03 16 15 N -0.57 -14.25 2.69 -165.83 -0.45 -14.70 16 16 C -0.26 -7.09 9.58 -15.06 -0.14 -7.24 16 17 H 0.07 1.81 7.89 -52.48 -0.41 1.39 16 18 C 0.01 0.22 4.91 -17.43 -0.09 0.13 16 19 N -0.89 -25.97 11.19 55.49 0.62 -25.35 16 20 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 O -0.15 -3.23 7.25 5.72 0.04 -3.19 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.13 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 2.31 6.04 -51.93 -0.31 2.00 16 40 H 0.03 0.82 6.29 -51.93 -0.33 0.49 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 323.19 15.07 4.87 4.87 Total: -1.00 -29.89 323.19 -8.52 -38.41 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.85 Total: 2.35 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -1.72 Total: -19.02 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.18 Total: -40.05 kcal Atomic # 8 Polarization: -3.23 SS G_CDS: 0.04 Total: -3.19 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.89 -8.52 -38.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174448126.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.342 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds