Wall clock time and date at job start Mon Mar 30 2020 07:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50709 * 109.47132 * 2 1 4 4 C 1.34512 * 125.78660 * 90.00108 * 3 2 1 5 5 C 1.41390 * 106.83780 * 179.79603 * 4 3 2 6 6 C 1.34513 * 106.83644 * 0.37049 * 5 4 3 7 7 C 1.50704 * 125.78591 * 179.89010 * 6 5 4 8 8 H 1.08999 * 109.69898 * 19.36327 * 7 6 5 9 9 C 1.53628 * 109.74080 * 258.81610 * 7 6 5 10 10 C 1.53038 * 109.23864 * 295.11867 * 9 7 6 11 11 H 1.08998 * 109.46328 * 58.53502 * 10 9 7 12 12 C 1.52999 * 109.44940 * 178.49828 * 10 9 7 13 13 C 1.53041 * 109.53739 * 298.51173 * 10 9 7 14 14 C 1.53185 * 109.31523 * 61.36485 * 13 10 9 15 15 N 1.46918 * 109.58794 * 139.71475 * 7 6 5 16 16 C 1.36935 * 120.63514 * 246.20368 * 15 7 6 17 17 H 1.08006 * 119.99849 * 332.04217 * 16 15 7 18 18 C 1.38816 * 120.00322 * 152.04378 * 16 15 7 19 19 N 1.31621 * 119.99745 * 342.64284 * 18 16 15 20 20 Si 1.86797 * 119.99953 * 162.64790 * 18 16 15 21 21 H 1.48494 * 109.47007 * 269.99707 * 20 18 16 22 22 H 1.48502 * 109.47242 * 29.99852 * 20 18 16 23 23 H 1.48505 * 109.46823 * 149.99923 * 20 18 16 24 24 O 1.34298 * 125.78638 * 270.02982 * 3 2 1 25 25 H 1.09003 * 109.46932 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47533 * 299.99479 * 1 2 3 27 27 H 1.09001 * 109.47587 * 59.99816 * 1 2 3 28 28 H 1.09003 * 109.47533 * 240.00521 * 2 1 3 29 29 H 1.09001 * 109.47587 * 120.00183 * 2 1 3 30 30 H 1.07995 * 126.58303 * 0.03852 * 4 3 2 31 31 H 1.07998 * 126.57688 * 180.23727 * 5 4 3 32 32 H 1.08996 * 109.63255 * 175.12855 * 9 7 6 33 33 H 1.08998 * 109.45712 * 55.00489 * 9 7 6 34 34 H 1.08994 * 109.47672 * 180.02562 * 12 10 9 35 35 H 1.09004 * 109.47155 * 300.06087 * 12 10 9 36 36 H 1.09002 * 109.47376 * 60.05567 * 12 10 9 37 37 H 1.09005 * 109.49581 * 301.40969 * 13 10 9 38 38 H 1.09004 * 109.49480 * 181.32290 * 13 10 9 39 39 H 1.08999 * 109.58920 * 185.57604 * 14 13 10 40 40 H 1.09004 * 109.58595 * 65.15421 * 14 13 10 41 41 H 0.96998 * 119.99352 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2945 2.1625 1.0912 5 6 2.7448 3.4217 0.6320 6 6 2.7229 3.3768 -0.7122 7 6 3.1192 4.4981 -1.6379 8 1 3.7391 5.2161 -1.1010 9 6 1.8609 5.1992 -2.1721 10 6 1.0662 4.2186 -3.0375 11 1 0.7993 3.3442 -2.4439 12 6 -0.2073 4.9004 -3.5416 13 6 1.9184 3.7832 -4.2318 14 6 3.1759 3.0707 -3.7241 15 7 3.8702 3.9540 -2.7773 16 6 5.1937 4.2596 -2.9506 17 1 5.5856 5.1941 -2.5767 18 6 6.0318 3.3686 -3.6067 19 7 5.6674 2.1130 -3.7593 20 14 7.6767 3.9513 -4.2731 21 1 7.5040 4.4304 -5.6680 22 1 8.1881 5.0605 -3.4284 23 1 8.6457 2.8262 -4.2526 24 8 2.2935 2.1615 -1.0894 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.1860 1.8539 2.1204 31 1 3.0462 4.2594 1.2434 32 1 2.1493 6.0624 -2.7718 33 1 1.2449 5.5273 -1.3348 34 1 -0.7739 4.2022 -4.1576 35 1 -0.8144 5.2105 -2.6911 36 1 0.0593 5.7746 -4.1356 37 1 2.2062 4.6599 -4.8121 38 1 1.3434 3.1031 -4.8603 39 1 3.8332 2.8465 -4.5641 40 1 2.8938 2.1456 -3.2212 41 1 6.2532 1.4903 -4.2175 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174448126.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:09 Heat of formation + Delta-G solvation = -2.170964 kcal Electronic energy + Delta-G solvation = -21171.271699 eV Core-core repulsion = 18244.929931 eV Total energy + Delta-G solvation = -2926.341768 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.33784 -39.46222 -35.58509 -34.99393 -33.97742 -32.96042 -31.73906 -29.43842 -28.27204 -25.93207 -24.73731 -23.53587 -22.59311 -22.48450 -20.92698 -20.34017 -18.78433 -17.33125 -16.88950 -16.64623 -15.79637 -15.67980 -15.31377 -15.15016 -14.81909 -14.70280 -14.06181 -13.99710 -13.85087 -13.51489 -13.25795 -13.15227 -13.04873 -12.87767 -12.58107 -12.55119 -12.35753 -12.23052 -12.03373 -11.94223 -11.83848 -11.50176 -11.11218 -11.04517 -10.57668 -10.52326 -8.98715 -8.74291 -7.88495 -5.35952 1.03388 1.45302 1.46722 1.55366 1.85546 2.26906 2.49791 3.26189 3.65313 3.82308 3.97410 4.07257 4.08024 4.21570 4.30343 4.34419 4.41685 4.54391 4.65143 4.68668 4.81646 4.87789 4.92173 4.95141 4.98069 4.98844 5.05432 5.09640 5.18105 5.25431 5.29639 5.34307 5.40309 5.45399 5.51948 5.56565 5.67680 5.86153 5.88814 6.35220 6.55576 7.11428 7.80668 8.33843 9.16301 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.007739 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.677997 B = 3616.954041 C = 4306.735258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.041 4.041 3 C -0.052 4.052 4 C -0.216 4.216 5 C -0.247 4.247 6 C -0.006 4.006 7 C 0.230 3.770 8 H 0.088 0.912 9 C -0.109 4.109 10 C -0.082 4.082 11 H 0.049 0.951 12 C -0.135 4.135 13 C -0.125 4.125 14 C 0.178 3.822 15 N -0.588 5.588 16 C -0.268 4.268 17 H 0.071 0.929 18 C -0.047 4.047 19 N -0.929 5.929 20 Si 0.968 3.032 21 H -0.283 1.283 22 H -0.267 1.267 23 H -0.297 1.297 24 O -0.176 6.176 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.165 0.835 31 H 0.155 0.845 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.003 0.997 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.827 1.043 6.086 13.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.078 4.078 3 C -0.102 4.102 4 C -0.235 4.235 5 C -0.267 4.267 6 C -0.059 4.059 7 C 0.122 3.878 8 H 0.106 0.894 9 C -0.148 4.148 10 C -0.101 4.101 11 H 0.068 0.932 12 C -0.192 4.192 13 C -0.163 4.163 14 C 0.052 3.948 15 N -0.309 5.309 16 C -0.398 4.398 17 H 0.089 0.911 18 C -0.243 4.243 19 N -0.574 5.574 20 Si 0.796 3.204 21 H -0.210 1.210 22 H -0.191 1.191 23 H -0.224 1.224 24 O -0.072 6.072 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.127 0.873 30 H 0.182 0.818 31 H 0.173 0.827 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.021 0.979 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.751 0.829 5.684 13.080 hybrid contribution 1.433 -0.119 -0.198 1.451 sum -10.319 0.711 5.486 11.708 Atomic orbital electron populations 1.21713 0.92599 1.03203 1.02013 1.20160 0.97429 0.86184 1.04048 1.23184 1.05501 0.96698 0.84791 1.21681 1.07755 0.94307 0.99718 1.21772 1.10618 1.00550 0.93748 1.24164 0.99991 0.86164 0.95589 1.19737 0.93202 0.88923 0.85953 0.89432 1.22036 0.95372 0.97892 0.99482 1.20970 0.95346 0.97787 0.95967 0.93231 1.21757 0.95891 1.00400 1.01142 1.22058 0.96842 0.99948 0.97497 1.20641 0.91284 0.90467 0.92374 1.44373 1.07064 1.55868 1.23549 1.19565 0.85777 0.99931 1.34529 0.91083 1.25850 1.01118 0.94599 1.02710 1.70245 1.38598 1.02987 1.45551 0.85259 0.79366 0.77152 0.78616 1.21004 1.19114 1.22430 1.84162 1.64726 1.22930 1.35347 0.89593 0.91698 0.93887 0.91597 0.87326 0.81789 0.82729 0.91022 0.90493 0.92437 0.91870 0.92276 0.92843 0.92249 0.93323 0.97913 0.94241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.89 71.98 0.71 -2.32 16 2 C -0.04 -1.13 6.47 29.85 0.19 -0.94 16 3 C -0.05 -1.90 6.57 24.84 0.16 -1.73 16 4 C -0.22 -7.38 10.81 22.19 0.24 -7.14 16 5 C -0.25 -9.28 10.80 22.19 0.24 -9.04 16 6 C -0.01 -0.25 5.52 24.83 0.14 -0.11 16 7 C 0.23 9.82 3.16 44.38 0.14 9.96 16 8 H 0.09 3.65 7.93 -2.39 -0.02 3.63 16 9 C -0.11 -3.78 4.85 30.82 0.15 -3.63 16 10 C -0.08 -2.83 2.50 -10.77 -0.03 -2.85 16 11 H 0.05 1.89 6.39 -2.39 -0.02 1.88 16 12 C -0.13 -3.52 9.19 71.98 0.66 -2.86 16 13 C -0.12 -4.95 5.36 30.67 0.16 -4.79 16 14 C 0.18 8.99 4.87 86.36 0.42 9.41 16 15 N -0.59 -30.08 2.69 -678.57 -1.82 -31.90 16 16 C -0.27 -14.91 9.58 84.03 0.81 -14.11 16 17 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 18 C -0.05 -2.65 4.91 84.86 0.42 -2.24 16 19 N -0.93 -56.38 11.19 21.65 0.24 -56.13 16 20 Si 0.97 45.53 29.59 68.60 2.03 47.56 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 24 O -0.18 -7.82 7.25 -2.45 -0.02 -7.84 16 25 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.16 4.42 8.06 -2.91 -0.02 4.40 16 31 H 0.16 5.00 8.06 -2.91 -0.02 4.98 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.05 2.78 6.04 -2.39 -0.01 2.77 16 40 H 0.00 0.16 6.29 -2.39 -0.02 0.14 16 41 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -66.86 323.19 5.83 -61.02 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.98 Total: 19.67 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: 4.42 Total: -32.38 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -1.58 Total: -88.04 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.02 Total: -7.84 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -66.86 5.83 -61.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174448126.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.854 kcal (2) G-P(sol) polarization free energy of solvation -66.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds