Wall clock time and date at job start Mon Mar 30 2020 06:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38133 * 120.01229 * 2 1 4 4 C 1.38677 * 120.01758 * 180.23663 * 3 2 1 5 5 O 1.36005 * 119.97989 * 179.76887 * 4 3 2 6 6 C 1.38721 * 120.03873 * 359.48444 * 4 3 2 7 7 C 1.38084 * 120.02267 * 0.26084 * 6 4 3 8 8 C 1.38844 * 120.00803 * 179.72490 * 2 1 3 9 9 N 1.39934 * 120.01850 * 359.97438 * 8 2 1 10 10 C 1.46509 * 120.00001 * 180.02562 * 9 8 2 11 11 C 1.53002 * 109.46894 * 179.97438 * 10 9 8 12 12 C 1.52991 * 109.47257 * 299.99756 * 11 10 9 13 13 C 1.53000 * 109.47152 * 59.99983 * 11 10 9 14 14 C 1.53004 * 109.46593 * 179.97438 * 11 10 9 15 15 C 1.50700 * 109.46852 * 179.97438 * 14 11 10 16 16 H 1.07995 * 120.00134 * 0.02562 * 15 14 11 17 17 C 1.37877 * 119.99934 * 180.02562 * 15 14 11 18 18 N 1.31519 * 120.00013 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99954 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47042 * 90.00184 * 19 17 15 21 21 H 1.48503 * 109.47390 * 210.00230 * 19 17 15 22 22 H 1.48499 * 109.47365 * 330.00537 * 19 17 15 23 23 H 1.09008 * 109.46773 * 270.27790 * 1 2 3 24 24 H 1.08995 * 109.47103 * 30.27569 * 1 2 3 25 25 H 1.08996 * 109.47121 * 150.27854 * 1 2 3 26 26 H 1.07996 * 119.99241 * 359.97438 * 3 2 1 27 27 H 0.96705 * 113.99633 * 269.72053 * 5 4 3 28 28 H 1.08005 * 119.99043 * 180.27811 * 6 4 3 29 29 H 1.07995 * 120.01380 * 180.02562 * 7 6 4 30 30 H 0.96998 * 120.00522 * 0.02562 * 9 8 2 31 31 H 1.08996 * 109.46583 * 299.99737 * 10 9 8 32 32 H 1.08998 * 109.47259 * 59.99599 * 10 9 8 33 33 H 1.08998 * 109.47485 * 60.00068 * 12 11 10 34 34 H 1.09002 * 109.46969 * 180.02562 * 12 11 10 35 35 H 1.08998 * 109.47205 * 300.00165 * 12 11 10 36 36 H 1.09010 * 109.47139 * 59.99523 * 13 11 10 37 37 H 1.08992 * 109.47384 * 179.97438 * 13 11 10 38 38 H 1.08998 * 109.47252 * 299.99721 * 13 11 10 39 39 H 1.08996 * 109.47212 * 300.00362 * 14 11 10 40 40 H 1.08998 * 109.46931 * 60.00408 * 14 11 10 41 41 H 0.96993 * 119.99841 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1961 0.0000 4 6 3.5847 1.1963 -0.0050 5 8 4.2642 2.3744 -0.0097 6 6 4.2792 -0.0045 0.0009 7 6 3.5902 -1.2012 0.0062 8 6 2.2014 -1.2023 0.0058 9 7 1.5023 -2.4145 0.0121 10 6 2.2354 -3.6829 0.0188 11 6 1.2416 -4.8463 0.0255 12 6 0.3625 -4.7588 1.2746 13 6 0.3615 -4.7724 -1.2238 14 6 2.0073 -6.1709 0.0319 15 6 1.0286 -7.3168 0.0391 16 1 -0.0333 -7.1200 0.0388 17 6 1.4888 -8.6165 0.0462 18 7 2.7820 -8.8562 0.0471 19 14 0.2756 -10.0368 0.0545 20 1 -0.0463 -10.4210 -1.3434 21 1 0.8763 -11.1968 0.7608 22 1 -0.9677 -9.6219 0.7525 23 1 -0.3633 0.0050 1.0278 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3633 -0.8924 -0.5095 26 1 1.6580 2.1314 -0.0004 27 1 4.4612 2.7112 -0.8945 28 1 5.3593 -0.0035 0.0016 29 1 4.1311 -2.1359 0.0112 30 1 0.5323 -2.4150 0.0121 31 1 2.8620 -3.7450 -0.8709 32 1 2.8621 -3.7357 0.9090 33 1 -0.1829 -3.8152 1.2698 34 1 -0.3451 -5.5879 1.2796 35 1 0.9896 -4.8114 2.1646 36 1 0.9879 -4.8347 -2.1138 37 1 -0.3461 -5.6014 -1.2192 38 1 -0.1839 -3.8288 -1.2287 39 1 2.6334 -6.2329 -0.8582 40 1 2.6346 -6.2237 0.9217 41 1 3.1057 -9.7705 0.0516 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229696482.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:06 Heat of formation + Delta-G solvation = -40.625857 kcal Electronic energy + Delta-G solvation = -19733.122007 eV Core-core repulsion = 16805.112709 eV Total energy + Delta-G solvation = -2928.009297 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.89313 -37.98713 -36.64810 -33.70647 -32.55391 -32.14955 -28.57012 -27.19213 -26.64075 -26.52908 -25.67501 -23.08260 -21.56999 -21.19702 -18.29463 -17.85919 -17.06306 -16.41773 -15.91443 -15.14368 -14.59917 -14.45318 -14.20652 -13.97470 -13.62751 -13.16227 -13.07403 -12.91519 -12.60235 -12.52809 -12.09672 -11.95322 -11.70907 -11.53192 -11.17688 -11.04005 -10.87534 -10.66959 -10.47678 -10.29130 -10.23711 -9.97675 -9.56695 -9.23634 -8.96511 -8.73061 -8.39416 -7.07178 -6.03782 -4.04890 1.43336 1.58592 3.28494 3.35676 3.37531 3.72031 3.78178 4.37811 4.42604 4.90361 4.93522 5.24731 5.32000 5.36530 5.43494 5.56500 5.59626 5.65320 5.70528 5.73745 5.92015 6.12041 6.14651 6.14921 6.21879 6.34879 6.35645 6.43670 6.60761 6.61210 6.62613 6.81135 7.01059 7.04311 7.07727 7.50992 7.58699 7.71361 7.77455 7.94867 7.97100 8.37331 8.99760 9.58529 11.07736 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.040193 B = 0.003784 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.464332 B = 7398.249078 C = 7890.500229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.158 4.158 3 C -0.095 4.095 4 C 0.028 3.972 5 O -0.501 6.501 6 C -0.096 4.096 7 C -0.182 4.182 8 C 0.221 3.779 9 N -0.736 5.736 10 C 0.130 3.870 11 C -0.071 4.071 12 C -0.126 4.126 13 C -0.126 4.126 14 C 0.037 3.963 15 C -0.511 4.511 16 H 0.059 0.941 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.121 0.879 27 H 0.377 0.623 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.399 0.601 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.029 0.971 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.028 0.972 39 H 0.017 0.983 40 H 0.018 0.982 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.718 17.658 -1.683 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.163 4.163 3 C -0.114 4.114 4 C -0.018 4.018 5 O -0.309 6.309 6 C -0.116 4.116 7 C -0.205 4.205 8 C 0.115 3.885 9 N -0.365 5.365 10 C 0.006 3.994 11 C -0.071 4.071 12 C -0.183 4.183 13 C -0.183 4.183 14 C -0.001 4.001 15 C -0.550 4.550 16 H 0.077 0.923 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.139 0.861 27 H 0.230 0.770 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.236 0.764 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.522 17.241 -1.054 17.340 hybrid contribution -0.761 -0.861 -0.514 1.259 sum -2.283 16.380 -1.568 16.613 Atomic orbital electron populations 1.20580 0.91341 1.02244 1.01932 1.19198 0.95703 0.91308 1.10124 1.20939 0.93238 0.97260 0.99971 1.18117 0.89750 0.84930 1.09009 1.84899 1.76602 1.36634 1.32790 1.21121 0.99835 0.91471 0.99134 1.20584 0.92202 0.98355 1.09390 1.17791 0.91376 0.86012 0.93282 1.45189 1.08459 1.02612 1.80275 1.21622 0.95055 0.82149 1.00524 1.20863 0.95340 0.95854 0.95075 1.21741 0.99634 0.99718 0.97239 1.21744 0.99624 0.99707 0.97239 1.19089 0.94993 0.88671 0.97340 1.21184 0.92975 0.90550 1.50262 0.92281 1.25007 0.94993 0.98959 0.95503 1.69958 1.12454 1.20140 1.50904 0.86647 0.81362 0.82261 0.78048 1.20754 1.21306 1.19934 0.91639 0.91693 0.92085 0.86060 0.76960 0.85930 0.85465 0.76390 0.92574 0.92536 0.95241 0.91529 0.93421 0.93432 0.91529 0.95283 0.96431 0.96409 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 9.57 36.01 0.34 -0.73 16 2 C -0.16 -2.01 5.90 -104.44 -0.62 -2.63 16 3 C -0.09 -1.16 9.64 -39.46 -0.38 -1.54 16 4 C 0.03 0.35 6.70 -39.24 -0.26 0.09 16 5 O -0.50 -5.64 13.51 -19.76 -0.27 -5.91 16 6 C -0.10 -1.24 9.98 -39.46 -0.39 -1.64 16 7 C -0.18 -2.55 9.31 -39.40 -0.37 -2.91 16 8 C 0.22 3.13 6.64 -83.69 -0.56 2.57 16 9 N -0.74 -10.56 5.04 -58.58 -0.30 -10.86 16 10 C 0.13 2.13 3.80 -4.04 -0.02 2.12 16 11 C -0.07 -1.32 0.54 -154.51 -0.08 -1.40 16 12 C -0.13 -2.23 8.05 37.15 0.30 -1.93 16 13 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 14 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 15 C -0.51 -13.43 7.65 -34.44 -0.26 -13.70 16 16 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.07 13.29 55.43 0.74 -25.34 16 19 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 24 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 25 H 0.06 0.62 6.54 -51.93 -0.34 0.28 16 26 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.38 2.43 9.06 45.56 0.41 2.84 16 28 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.13 1.75 6.73 -52.49 -0.35 1.40 16 30 H 0.40 5.38 4.15 -40.82 -0.17 5.21 16 31 H 0.06 0.94 7.95 -51.93 -0.41 0.52 16 32 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 33 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 34 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 37 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 38 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 326.25 15.07 4.92 4.92 Total: -1.00 -29.55 326.25 -7.62 -37.17 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.49 Total: 5.39 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -2.20 Total: -21.39 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.44 Total: -36.20 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.27 Total: -5.91 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.55 -7.62 -37.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229696482.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.451 kcal (2) G-P(sol) polarization free energy of solvation -29.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds