Wall clock time and date at job start Mon Mar 30 2020 06:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38133 * 120.01229 * 2 1 4 4 C 1.38677 * 120.01758 * 180.23663 * 3 2 1 5 5 O 1.36005 * 119.97989 * 179.76887 * 4 3 2 6 6 C 1.38721 * 120.03873 * 359.48444 * 4 3 2 7 7 C 1.38084 * 120.02267 * 0.26084 * 6 4 3 8 8 C 1.38844 * 120.00803 * 179.72490 * 2 1 3 9 9 N 1.39934 * 120.01850 * 359.97438 * 8 2 1 10 10 C 1.46509 * 120.00001 * 180.02562 * 9 8 2 11 11 C 1.53002 * 109.46894 * 179.97438 * 10 9 8 12 12 C 1.52991 * 109.47257 * 299.99756 * 11 10 9 13 13 C 1.53000 * 109.47152 * 59.99983 * 11 10 9 14 14 C 1.53004 * 109.46593 * 179.97438 * 11 10 9 15 15 C 1.50700 * 109.46852 * 179.97438 * 14 11 10 16 16 H 1.07995 * 120.00134 * 0.02562 * 15 14 11 17 17 C 1.37877 * 119.99934 * 180.02562 * 15 14 11 18 18 N 1.31519 * 120.00013 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99954 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47042 * 90.00184 * 19 17 15 21 21 H 1.48503 * 109.47390 * 210.00230 * 19 17 15 22 22 H 1.48499 * 109.47365 * 330.00537 * 19 17 15 23 23 H 1.09008 * 109.46773 * 270.27790 * 1 2 3 24 24 H 1.08995 * 109.47103 * 30.27569 * 1 2 3 25 25 H 1.08996 * 109.47121 * 150.27854 * 1 2 3 26 26 H 1.07996 * 119.99241 * 359.97438 * 3 2 1 27 27 H 0.96705 * 113.99633 * 269.72053 * 5 4 3 28 28 H 1.08005 * 119.99043 * 180.27811 * 6 4 3 29 29 H 1.07995 * 120.01380 * 180.02562 * 7 6 4 30 30 H 0.96998 * 120.00522 * 0.02562 * 9 8 2 31 31 H 1.08996 * 109.46583 * 299.99737 * 10 9 8 32 32 H 1.08998 * 109.47259 * 59.99599 * 10 9 8 33 33 H 1.08998 * 109.47485 * 60.00068 * 12 11 10 34 34 H 1.09002 * 109.46969 * 180.02562 * 12 11 10 35 35 H 1.08998 * 109.47205 * 300.00165 * 12 11 10 36 36 H 1.09010 * 109.47139 * 59.99523 * 13 11 10 37 37 H 1.08992 * 109.47384 * 179.97438 * 13 11 10 38 38 H 1.08998 * 109.47252 * 299.99721 * 13 11 10 39 39 H 1.08996 * 109.47212 * 300.00362 * 14 11 10 40 40 H 1.08998 * 109.46931 * 60.00408 * 14 11 10 41 41 H 0.96993 * 119.99841 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1961 0.0000 4 6 3.5847 1.1963 -0.0050 5 8 4.2642 2.3744 -0.0097 6 6 4.2792 -0.0045 0.0009 7 6 3.5902 -1.2012 0.0062 8 6 2.2014 -1.2023 0.0058 9 7 1.5023 -2.4145 0.0121 10 6 2.2354 -3.6829 0.0188 11 6 1.2416 -4.8463 0.0255 12 6 0.3625 -4.7588 1.2746 13 6 0.3615 -4.7724 -1.2238 14 6 2.0073 -6.1709 0.0319 15 6 1.0286 -7.3168 0.0391 16 1 -0.0333 -7.1200 0.0388 17 6 1.4888 -8.6165 0.0462 18 7 2.7820 -8.8562 0.0471 19 14 0.2756 -10.0368 0.0545 20 1 -0.0463 -10.4210 -1.3434 21 1 0.8763 -11.1968 0.7608 22 1 -0.9677 -9.6219 0.7525 23 1 -0.3633 0.0050 1.0278 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3633 -0.8924 -0.5095 26 1 1.6580 2.1314 -0.0004 27 1 4.4612 2.7112 -0.8945 28 1 5.3593 -0.0035 0.0016 29 1 4.1311 -2.1359 0.0112 30 1 0.5323 -2.4150 0.0121 31 1 2.8620 -3.7450 -0.8709 32 1 2.8621 -3.7357 0.9090 33 1 -0.1829 -3.8152 1.2698 34 1 -0.3451 -5.5879 1.2796 35 1 0.9896 -4.8114 2.1646 36 1 0.9879 -4.8347 -2.1138 37 1 -0.3461 -5.6014 -1.2192 38 1 -0.1839 -3.8288 -1.2287 39 1 2.6334 -6.2329 -0.8582 40 1 2.6346 -6.2237 0.9217 41 1 3.1057 -9.7705 0.0516 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229696482.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:06 Heat of formation + Delta-G solvation = -58.521174 kcal Electronic energy + Delta-G solvation = -19733.898006 eV Core-core repulsion = 16805.112709 eV Total energy + Delta-G solvation = -2928.785297 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.90777 -39.25697 -37.79039 -35.18017 -33.94493 -33.45158 -29.80376 -28.81089 -27.97992 -27.74321 -26.97745 -24.83983 -22.70189 -22.20922 -19.75343 -18.76146 -18.38018 -18.22861 -17.08586 -16.49044 -16.07783 -15.76662 -15.42009 -15.15222 -14.73567 -14.49289 -14.44857 -14.02266 -13.96513 -13.90175 -13.52764 -13.03971 -12.86613 -12.77757 -12.70096 -12.49278 -12.41212 -12.33851 -12.20138 -11.96030 -11.55482 -11.23511 -10.97967 -10.84259 -10.71430 -10.51305 -9.69447 -8.14849 -8.13899 -6.21952 0.45289 0.59478 1.41619 1.42090 1.52182 2.41956 2.58111 2.81595 3.19807 3.50794 3.94347 4.00035 4.02150 4.10362 4.23750 4.37580 4.51955 4.63132 4.69835 4.74840 4.77801 4.81974 4.84991 4.96305 5.02107 5.10525 5.13581 5.29067 5.36729 5.43186 5.48109 5.48623 5.51483 5.55483 5.63409 5.80337 5.86668 5.89835 6.28660 6.41332 6.88518 6.93320 7.03496 7.45670 8.97471 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.040193 B = 0.003784 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.464332 B = 7398.249078 C = 7890.500229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.156 4.156 3 C -0.100 4.100 4 C 0.031 3.969 5 O -0.510 6.510 6 C -0.108 4.108 7 C -0.197 4.197 8 C 0.201 3.799 9 N -0.733 5.733 10 C 0.146 3.854 11 C -0.065 4.065 12 C -0.120 4.120 13 C -0.119 4.119 14 C 0.042 3.958 15 C -0.515 4.515 16 H 0.069 0.931 17 C -0.003 4.003 18 N -0.937 5.937 19 Si 0.955 3.045 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.262 1.262 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.143 0.857 27 H 0.400 0.600 28 H 0.133 0.867 29 H 0.119 0.881 30 H 0.404 0.596 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.037 0.963 36 H 0.038 0.962 37 H 0.052 0.948 38 H 0.062 0.938 39 H -0.011 1.011 40 H -0.012 1.012 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.613 19.513 -1.831 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.161 4.161 3 C -0.119 4.119 4 C -0.015 4.015 5 O -0.321 6.321 6 C -0.127 4.127 7 C -0.220 4.220 8 C 0.096 3.904 9 N -0.364 5.364 10 C 0.021 3.979 11 C -0.065 4.065 12 C -0.177 4.177 13 C -0.177 4.177 14 C 0.004 3.996 15 C -0.553 4.553 16 H 0.087 0.913 17 C -0.200 4.200 18 N -0.578 5.578 19 Si 0.781 3.219 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.186 1.186 23 H 0.091 0.909 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.161 0.839 27 H 0.257 0.743 28 H 0.151 0.849 29 H 0.137 0.863 30 H 0.243 0.757 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.007 0.993 40 H 0.006 0.994 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.430 19.138 -1.217 19.481 hybrid contribution -0.088 -1.296 -0.479 1.384 sum -3.518 17.842 -1.696 18.264 Atomic orbital electron populations 1.20648 0.89501 1.03271 1.02697 1.19493 0.97114 0.90734 1.08735 1.21204 0.93195 0.98005 0.99498 1.18261 0.90206 0.85186 1.07881 1.84832 1.76440 1.35928 1.34906 1.21277 1.00547 0.91410 0.99447 1.20661 0.92611 0.98559 1.10120 1.17946 0.91493 0.86318 0.94608 1.44888 1.08424 1.01803 1.81294 1.21225 0.94294 0.82610 0.99743 1.20675 0.95552 0.93793 0.96494 1.21659 0.99071 1.00884 0.96083 1.21661 0.99063 1.00913 0.96039 1.18954 0.94506 0.91616 0.94491 1.21596 0.93765 0.91213 1.48762 0.91340 1.25896 0.96614 1.01974 0.95484 1.70101 1.14497 1.20602 1.52576 0.85589 0.79357 0.78747 0.78224 1.20156 1.21460 1.18606 0.90910 0.89837 0.91920 0.83936 0.74325 0.84890 0.86334 0.75714 0.93411 0.93574 0.91904 0.92969 0.94367 0.94258 0.92942 0.91904 0.99277 0.99354 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 9.57 71.24 0.68 -1.13 16 2 C -0.16 -3.59 5.90 -19.74 -0.12 -3.71 16 3 C -0.10 -2.18 9.64 22.35 0.22 -1.97 16 4 C 0.03 0.72 6.70 22.49 0.15 0.87 16 5 O -0.51 -10.24 13.51 -93.60 -1.26 -11.50 16 6 C -0.11 -2.68 9.98 22.35 0.22 -2.46 16 7 C -0.20 -5.44 9.31 22.39 0.21 -5.24 16 8 C 0.20 5.42 6.64 38.15 0.25 5.68 16 9 N -0.73 -20.05 5.04 -339.25 -1.71 -21.76 16 10 C 0.15 4.82 3.80 86.38 0.33 5.15 16 11 C -0.06 -2.41 0.54 -52.18 -0.03 -2.44 16 12 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 13 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 14 C 0.04 2.08 4.04 29.85 0.12 2.20 16 15 C -0.52 -27.45 7.65 25.60 0.20 -27.26 16 16 H 0.07 3.46 5.68 -2.91 -0.02 3.44 16 17 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 18 N -0.94 -56.17 13.29 21.45 0.28 -55.89 16 19 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 24 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 25 H 0.06 1.07 6.54 -2.39 -0.02 1.06 16 26 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 27 H 0.40 4.09 9.06 -74.05 -0.67 3.42 16 28 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 29 H 0.12 3.39 6.73 -2.91 -0.02 3.37 16 30 H 0.40 9.89 4.15 -92.71 -0.39 9.50 16 31 H 0.05 1.64 7.95 -2.39 -0.02 1.62 16 32 H 0.05 1.61 7.95 -2.39 -0.02 1.59 16 33 H 0.06 1.73 6.86 -2.39 -0.02 1.71 16 34 H 0.05 1.93 6.62 -2.39 -0.02 1.92 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.05 1.92 6.62 -2.39 -0.02 1.91 16 38 H 0.06 1.70 6.86 -2.39 -0.02 1.69 16 39 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -64.11 326.25 3.17 -60.95 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -0.02 Total: 19.80 kcal Atomic # 6 Polarization: -40.86 SS G_CDS: 3.85 Total: -37.01 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -1.43 Total: -77.65 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -1.26 Total: -11.50 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -64.11 3.17 -60.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229696482.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.426 kcal (2) G-P(sol) polarization free energy of solvation -64.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds