Wall clock time and date at job start Mon Mar 30 2020 06:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38134 * 119.99493 * 2 1 4 4 C 1.38840 * 119.98168 * 179.97438 * 3 2 1 5 5 N 1.39939 * 120.02048 * 179.97438 * 4 3 2 6 6 C 1.46494 * 119.99832 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46890 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47117 * 300.00194 * 7 6 5 9 9 C 1.53000 * 109.47092 * 60.00053 * 7 6 5 10 10 C 1.53004 * 109.47282 * 179.97438 * 7 6 5 11 11 C 1.50695 * 109.46934 * 179.97438 * 10 7 6 12 12 H 1.07999 * 120.00546 * 0.02562 * 11 10 7 13 13 C 1.37883 * 119.99772 * 180.02562 * 11 10 7 14 14 N 1.31512 * 119.99991 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00144 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47028 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47330 * 119.99548 * 15 13 11 18 18 H 1.48496 * 109.47150 * 239.99920 * 15 13 11 19 19 C 1.38889 * 119.95943 * 359.72329 * 4 3 2 20 20 C 1.38085 * 119.98156 * 0.55409 * 19 4 3 21 21 C 1.38683 * 119.98894 * 179.97438 * 2 1 3 22 22 O 1.36008 * 119.97762 * 359.97438 * 21 2 1 23 23 H 1.09000 * 109.47040 * 270.02800 * 1 2 3 24 24 H 1.09006 * 109.46874 * 30.01884 * 1 2 3 25 25 H 1.08993 * 109.47385 * 150.02529 * 1 2 3 26 26 H 1.08000 * 120.00538 * 359.95534 * 3 2 1 27 27 H 0.97000 * 119.99445 * 0.02562 * 5 4 3 28 28 H 1.09002 * 109.47278 * 299.99585 * 6 5 4 29 29 H 1.08996 * 109.47512 * 60.00580 * 6 5 4 30 30 H 1.08997 * 109.47009 * 59.99927 * 8 7 6 31 31 H 1.09007 * 109.46828 * 179.97438 * 8 7 6 32 32 H 1.08996 * 109.47025 * 299.99529 * 8 7 6 33 33 H 1.09002 * 109.47691 * 59.99770 * 9 7 6 34 34 H 1.08999 * 109.47471 * 180.02562 * 9 7 6 35 35 H 1.09002 * 109.47478 * 299.99791 * 9 7 6 36 36 H 1.08994 * 109.46952 * 300.00073 * 10 7 6 37 37 H 1.08995 * 109.46661 * 60.00059 * 10 7 6 38 38 H 0.97002 * 120.00033 * 179.97438 * 14 13 11 39 39 H 1.07998 * 120.00566 * 180.27567 * 19 4 3 40 40 H 1.08002 * 119.99329 * 179.72922 * 20 19 4 41 41 H 0.96691 * 114.00139 * 270.02425 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1963 0.0000 4 6 3.5859 1.1960 0.0005 5 7 4.2863 2.4075 0.0000 6 6 5.7513 2.4066 0.0011 7 6 6.2621 3.8488 0.0009 8 6 5.7535 4.5698 -1.2490 9 6 5.7516 4.5709 1.2494 10 6 7.7922 3.8480 0.0027 11 6 8.2952 5.2685 0.0018 12 1 7.5939 6.0898 0.0006 13 6 9.6510 5.5197 0.0027 14 7 10.5050 4.5196 0.0047 15 14 10.2747 7.2805 0.0023 16 1 9.1202 8.2145 0.0004 17 1 11.0988 7.5140 1.2152 18 1 11.1006 7.5128 -1.2097 19 6 4.2793 -0.0074 0.0069 20 6 3.5874 -1.2024 0.0011 21 6 2.2002 -1.2012 0.0005 22 8 1.5194 -2.3786 0.0016 23 1 -0.3633 0.0005 1.0277 24 1 -0.3633 0.8899 -0.5142 25 1 -0.3634 -0.8901 -0.5134 26 1 1.6575 2.1316 -0.0007 27 1 3.8018 3.2478 -0.0004 28 1 6.1136 1.8934 0.8919 29 1 6.1150 1.8919 -0.8881 30 1 4.6635 4.5704 -1.2498 31 1 6.1171 5.5975 -1.2489 32 1 6.1172 4.0555 -2.1385 33 1 6.1139 4.0573 2.1400 34 1 6.1151 5.5985 1.2491 35 1 4.6616 4.5716 1.2486 36 1 8.1541 3.3345 0.8934 37 1 8.1562 3.3335 -0.8865 38 1 11.4588 4.6963 0.0049 39 1 5.3592 -0.0085 0.0118 40 1 4.1263 -2.1383 0.0016 41 1 1.3226 -2.7183 0.8852 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229700425.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:44 Heat of formation + Delta-G solvation = -42.372136 kcal Electronic energy + Delta-G solvation = -19537.078297 eV Core-core repulsion = 16608.993275 eV Total energy + Delta-G solvation = -2928.085022 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.86585 -38.01518 -36.48216 -33.93047 -32.48742 -32.01667 -28.83559 -27.10844 -26.52020 -26.47904 -25.57173 -22.85806 -22.44356 -20.56431 -18.35269 -18.08181 -16.74338 -16.38344 -15.90699 -15.33262 -14.58521 -14.39349 -14.13870 -14.02673 -13.50418 -13.16503 -13.06139 -12.77312 -12.76637 -12.54864 -12.10733 -11.86880 -11.81061 -11.65997 -11.16535 -11.04546 -10.85557 -10.67171 -10.45698 -10.27379 -10.22211 -9.95459 -9.52971 -9.23322 -8.95170 -8.69803 -8.39676 -7.10307 -6.03812 -4.04785 1.44271 1.58295 3.27753 3.36030 3.38492 3.71034 3.79896 4.41350 4.42870 4.87021 4.93393 5.29052 5.32098 5.41506 5.45462 5.51277 5.57619 5.61918 5.74362 5.80191 5.88489 6.08509 6.13709 6.15718 6.23000 6.36200 6.36365 6.45297 6.61588 6.62685 6.64839 6.80303 7.01927 7.04859 7.08368 7.51879 7.59105 7.71607 7.78066 7.95040 7.97731 8.37574 9.00135 9.58674 11.07740 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.046593 B = 0.003496 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.809549 B = 8007.087926 C = 8403.683694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.062 4.062 3 C -0.193 4.193 4 C 0.224 3.776 5 N -0.737 5.737 6 C 0.131 3.869 7 C -0.071 4.071 8 C -0.126 4.126 9 C -0.126 4.126 10 C 0.036 3.964 11 C -0.511 4.511 12 H 0.060 0.940 13 C 0.056 3.944 14 N -0.895 5.895 15 Si 0.888 3.112 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.190 4.190 20 C -0.089 4.089 21 C 0.024 3.976 22 O -0.498 6.498 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.120 0.880 27 H 0.398 0.602 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.029 0.971 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.029 0.971 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.259 0.741 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.796 -8.341 1.593 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.063 4.063 3 C -0.216 4.216 4 C 0.118 3.882 5 N -0.365 5.365 6 C 0.007 3.993 7 C -0.071 4.071 8 C -0.183 4.183 9 C -0.183 4.183 10 C -0.001 4.001 11 C -0.549 4.549 12 H 0.078 0.922 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.213 4.213 20 C -0.108 4.108 21 C -0.022 4.022 22 O -0.306 6.306 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.138 0.862 27 H 0.234 0.766 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.069 0.931 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -16.340 -8.308 0.971 18.356 hybrid contribution 0.424 1.177 0.517 1.353 sum -15.916 -7.131 1.488 17.504 Atomic orbital electron populations 1.20677 0.91229 1.02878 1.01992 1.19854 0.95953 0.92116 0.98423 1.20320 0.91973 0.97530 1.11782 1.17942 0.90879 0.86917 0.92423 1.45107 1.06344 1.04659 1.80385 1.21609 0.78254 0.98894 1.00495 1.20865 1.00001 0.91178 0.95098 1.21742 0.97551 1.01827 0.97210 1.21742 0.97531 1.01829 0.97207 1.19093 0.86202 0.97505 0.97335 1.21225 0.91319 0.92235 1.50114 0.92220 1.25012 0.97187 0.96783 0.95520 1.69968 1.02006 1.30475 1.51007 0.86592 0.78919 0.85269 0.77558 1.19796 1.21104 1.21104 1.20588 1.00031 0.90602 1.10105 1.21113 0.93236 0.98012 0.98414 1.17949 0.89610 0.84560 1.10098 1.84871 1.76515 1.36494 1.32679 0.91524 0.91723 0.91033 0.86204 0.76583 0.92595 0.92565 0.95183 0.91557 0.93441 0.93460 0.91557 0.95197 0.96429 0.96421 0.93086 0.85565 0.85883 0.77154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.79 36.00 0.35 -0.70 16 2 C -0.06 -0.76 5.89 -104.50 -0.62 -1.38 16 3 C -0.19 -2.47 9.55 -39.40 -0.38 -2.85 16 4 C 0.22 3.17 6.66 -83.69 -0.56 2.61 16 5 N -0.74 -10.57 5.14 -58.59 -0.30 -10.88 16 6 C 0.13 2.16 3.80 -4.04 -0.02 2.14 16 7 C -0.07 -1.32 0.54 -154.50 -0.08 -1.41 16 8 C -0.13 -2.23 8.05 37.16 0.30 -1.94 16 9 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 10 C 0.04 0.87 4.04 -27.88 -0.11 0.75 16 11 C -0.51 -13.45 7.65 -34.44 -0.26 -13.71 16 12 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 13 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 15 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C -0.19 -2.66 9.31 -39.40 -0.37 -3.03 16 20 C -0.09 -1.14 9.98 -39.46 -0.39 -1.54 16 21 C 0.02 0.30 6.68 -39.24 -0.26 0.04 16 22 O -0.50 -5.48 12.54 -19.77 -0.25 -5.73 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 25 H 0.07 0.67 7.52 -51.93 -0.39 0.28 16 26 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 27 H 0.40 5.34 6.18 -40.82 -0.25 5.09 16 28 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 29 H 0.06 0.95 7.96 -51.93 -0.41 0.54 16 30 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 31 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 35 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.13 1.75 6.73 -52.49 -0.35 1.40 16 40 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.38 2.43 9.06 45.56 0.41 2.84 16 LS Contribution 328.51 15.07 4.95 4.95 Total: -1.00 -29.55 328.51 -7.70 -37.24 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.62 Total: 5.20 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -2.19 Total: -21.47 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.43 Total: -36.26 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.25 Total: -5.73 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.55 -7.70 -37.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229700425.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.128 kcal (2) G-P(sol) polarization free energy of solvation -29.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds