Wall clock time and date at job start Mon Mar 30 2020 06:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38134 * 119.99493 * 2 1 4 4 C 1.38840 * 119.98168 * 179.97438 * 3 2 1 5 5 N 1.39939 * 120.02048 * 179.97438 * 4 3 2 6 6 C 1.46494 * 119.99832 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46890 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47117 * 300.00194 * 7 6 5 9 9 C 1.53000 * 109.47092 * 60.00053 * 7 6 5 10 10 C 1.53004 * 109.47282 * 179.97438 * 7 6 5 11 11 C 1.50695 * 109.46934 * 179.97438 * 10 7 6 12 12 H 1.07999 * 120.00546 * 0.02562 * 11 10 7 13 13 C 1.37883 * 119.99772 * 180.02562 * 11 10 7 14 14 N 1.31512 * 119.99991 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00144 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47028 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47330 * 119.99548 * 15 13 11 18 18 H 1.48496 * 109.47150 * 239.99920 * 15 13 11 19 19 C 1.38889 * 119.95943 * 359.72329 * 4 3 2 20 20 C 1.38085 * 119.98156 * 0.55409 * 19 4 3 21 21 C 1.38683 * 119.98894 * 179.97438 * 2 1 3 22 22 O 1.36008 * 119.97762 * 359.97438 * 21 2 1 23 23 H 1.09000 * 109.47040 * 270.02800 * 1 2 3 24 24 H 1.09006 * 109.46874 * 30.01884 * 1 2 3 25 25 H 1.08993 * 109.47385 * 150.02529 * 1 2 3 26 26 H 1.08000 * 120.00538 * 359.95534 * 3 2 1 27 27 H 0.97000 * 119.99445 * 0.02562 * 5 4 3 28 28 H 1.09002 * 109.47278 * 299.99585 * 6 5 4 29 29 H 1.08996 * 109.47512 * 60.00580 * 6 5 4 30 30 H 1.08997 * 109.47009 * 59.99927 * 8 7 6 31 31 H 1.09007 * 109.46828 * 179.97438 * 8 7 6 32 32 H 1.08996 * 109.47025 * 299.99529 * 8 7 6 33 33 H 1.09002 * 109.47691 * 59.99770 * 9 7 6 34 34 H 1.08999 * 109.47471 * 180.02562 * 9 7 6 35 35 H 1.09002 * 109.47478 * 299.99791 * 9 7 6 36 36 H 1.08994 * 109.46952 * 300.00073 * 10 7 6 37 37 H 1.08995 * 109.46661 * 60.00059 * 10 7 6 38 38 H 0.97002 * 120.00033 * 179.97438 * 14 13 11 39 39 H 1.07998 * 120.00566 * 180.27567 * 19 4 3 40 40 H 1.08002 * 119.99329 * 179.72922 * 20 19 4 41 41 H 0.96691 * 114.00139 * 270.02425 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1963 0.0000 4 6 3.5859 1.1960 0.0005 5 7 4.2863 2.4075 0.0000 6 6 5.7513 2.4066 0.0011 7 6 6.2621 3.8488 0.0009 8 6 5.7535 4.5698 -1.2490 9 6 5.7516 4.5709 1.2494 10 6 7.7922 3.8480 0.0027 11 6 8.2952 5.2685 0.0018 12 1 7.5939 6.0898 0.0006 13 6 9.6510 5.5197 0.0027 14 7 10.5050 4.5196 0.0047 15 14 10.2747 7.2805 0.0023 16 1 9.1202 8.2145 0.0004 17 1 11.0988 7.5140 1.2152 18 1 11.1006 7.5128 -1.2097 19 6 4.2793 -0.0074 0.0069 20 6 3.5874 -1.2024 0.0011 21 6 2.2002 -1.2012 0.0005 22 8 1.5194 -2.3786 0.0016 23 1 -0.3633 0.0005 1.0277 24 1 -0.3633 0.8899 -0.5142 25 1 -0.3634 -0.8901 -0.5134 26 1 1.6575 2.1316 -0.0007 27 1 3.8018 3.2478 -0.0004 28 1 6.1136 1.8934 0.8919 29 1 6.1150 1.8919 -0.8881 30 1 4.6635 4.5704 -1.2498 31 1 6.1171 5.5975 -1.2489 32 1 6.1172 4.0555 -2.1385 33 1 6.1139 4.0573 2.1400 34 1 6.1151 5.5985 1.2491 35 1 4.6616 4.5716 1.2486 36 1 8.1541 3.3345 0.8934 37 1 8.1562 3.3335 -0.8865 38 1 11.4588 4.6963 0.0049 39 1 5.3592 -0.0085 0.0118 40 1 4.1263 -2.1383 0.0016 41 1 1.3226 -2.7183 0.8852 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229700425.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:44 Heat of formation + Delta-G solvation = -60.322072 kcal Electronic energy + Delta-G solvation = -19537.856664 eV Core-core repulsion = 16608.993275 eV Total energy + Delta-G solvation = -2928.863389 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.86186 -39.31784 -37.61381 -35.28483 -34.12228 -33.15985 -30.04984 -28.84158 -27.97534 -27.44343 -26.94824 -24.67966 -23.42519 -21.62833 -19.79348 -19.03713 -18.37547 -17.90630 -17.03863 -16.48434 -16.24009 -15.76391 -15.38264 -15.12711 -14.67531 -14.43753 -14.37281 -14.04777 -14.00612 -13.87168 -13.44118 -13.14442 -12.82762 -12.74815 -12.72013 -12.57861 -12.47773 -12.34995 -12.20755 -11.93895 -11.54355 -11.19416 -10.97849 -10.83692 -10.64977 -10.52484 -9.65512 -8.17606 -8.15397 -6.22398 0.46083 0.59624 1.40095 1.41727 1.52929 2.41480 2.57294 2.82623 3.19325 3.54724 3.93777 4.00944 4.03649 4.10500 4.24228 4.38806 4.55096 4.62411 4.71432 4.75118 4.75441 4.86034 4.93442 4.96684 5.06209 5.10903 5.11668 5.22133 5.41715 5.44400 5.45507 5.48503 5.51445 5.55146 5.68837 5.80215 5.86309 5.89641 6.28752 6.42025 6.89371 6.93268 7.03905 7.45242 8.97132 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.046593 B = 0.003496 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.809549 B = 8007.087926 C = 8403.683694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.069 4.069 3 C -0.192 4.192 4 C 0.207 3.793 5 N -0.733 5.733 6 C 0.147 3.853 7 C -0.065 4.065 8 C -0.120 4.120 9 C -0.119 4.119 10 C 0.041 3.959 11 C -0.514 4.514 12 H 0.068 0.932 13 C -0.003 4.003 14 N -0.937 5.937 15 Si 0.955 3.045 16 H -0.260 1.260 17 H -0.283 1.283 18 H -0.284 1.284 19 C -0.207 4.207 20 C -0.098 4.098 21 C 0.024 3.976 22 O -0.504 6.504 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.138 0.862 27 H 0.405 0.595 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.063 0.937 36 H -0.011 1.011 37 H -0.012 1.012 38 H 0.260 0.740 39 H 0.117 0.883 40 H 0.134 0.866 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.388 -7.713 1.770 20.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.070 4.070 3 C -0.214 4.214 4 C 0.103 3.897 5 N -0.364 5.364 6 C 0.023 3.977 7 C -0.065 4.065 8 C -0.177 4.177 9 C -0.177 4.177 10 C 0.004 3.996 11 C -0.552 4.552 12 H 0.087 0.913 13 C -0.200 4.200 14 N -0.578 5.578 15 Si 0.781 3.219 16 H -0.183 1.183 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.230 4.230 20 C -0.117 4.117 21 C -0.022 4.022 22 O -0.315 6.315 23 H 0.101 0.899 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.156 0.844 27 H 0.242 0.758 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.007 0.993 37 H 0.006 0.994 38 H 0.069 0.931 39 H 0.135 0.865 40 H 0.152 0.848 41 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -18.974 -7.692 1.161 20.507 hybrid contribution 1.151 0.840 0.472 1.501 sum -17.823 -6.853 1.633 19.165 Atomic orbital electron populations 1.20711 0.89096 1.03405 1.03197 1.20205 0.97568 0.91681 0.97546 1.20542 0.91347 0.98645 1.10910 1.18078 0.91581 0.86526 0.93520 1.44809 1.04971 1.05234 1.81337 1.21205 0.79895 0.96937 0.99698 1.20679 0.96230 0.93104 0.96520 1.21661 0.99616 1.00381 0.96040 1.21658 0.99616 1.00364 0.96014 1.18959 0.90276 0.95896 0.94482 1.21628 0.91566 0.93413 1.48635 0.91345 1.25901 0.97723 1.00892 0.95504 1.70108 1.02255 1.32783 1.52644 0.85533 0.78536 0.80459 0.77356 1.18347 1.20941 1.20993 1.20655 0.99848 0.91383 1.11078 1.21283 0.93818 0.98118 0.98525 1.18094 0.89570 0.85379 1.09141 1.84808 1.76153 1.35885 1.34672 0.89876 0.90678 0.91036 0.84372 0.75813 0.93446 0.93621 0.91798 0.93019 0.94392 0.94286 0.93042 0.91780 0.99276 0.99370 0.93143 0.86472 0.84824 0.74640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 9.79 71.24 0.70 -0.99 16 2 C -0.07 -1.51 5.89 -19.78 -0.12 -1.62 16 3 C -0.19 -4.44 9.55 22.39 0.21 -4.23 16 4 C 0.21 5.59 6.66 38.15 0.25 5.84 16 5 N -0.73 -20.01 5.14 -339.27 -1.75 -21.76 16 6 C 0.15 4.87 3.80 86.38 0.33 5.20 16 7 C -0.06 -2.42 0.54 -52.18 -0.03 -2.45 16 8 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 9 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 10 C 0.04 2.06 4.04 29.85 0.12 2.19 16 11 C -0.51 -27.49 7.65 25.60 0.20 -27.29 16 12 H 0.07 3.48 5.68 -2.91 -0.02 3.46 16 13 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 14 N -0.94 -56.27 13.29 21.45 0.28 -55.99 16 15 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 16 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 C -0.21 -5.74 9.31 22.39 0.21 -5.53 16 20 C -0.10 -2.45 9.98 22.35 0.22 -2.23 16 21 C 0.02 0.57 6.68 22.49 0.15 0.72 16 22 O -0.50 -9.91 12.54 -93.64 -1.17 -11.09 16 23 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 24 H 0.07 1.03 8.09 -2.38 -0.02 1.01 16 25 H 0.07 1.13 7.52 -2.39 -0.02 1.12 16 26 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 27 H 0.40 9.77 6.18 -92.71 -0.57 9.20 16 28 H 0.05 1.64 7.94 -2.39 -0.02 1.62 16 29 H 0.05 1.59 7.96 -2.39 -0.02 1.58 16 30 H 0.06 1.76 6.86 -2.39 -0.02 1.74 16 31 H 0.05 1.92 6.62 -2.38 -0.02 1.90 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 35 H 0.06 1.74 6.86 -2.39 -0.02 1.73 16 36 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 37 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 38 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 39 H 0.12 3.37 6.73 -2.91 -0.02 3.35 16 40 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 41 H 0.40 4.10 9.06 -74.06 -0.67 3.43 16 Total: -1.00 -64.16 328.51 3.05 -61.12 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.21 Total: 19.31 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 3.87 Total: -37.15 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -1.46 Total: -77.74 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -1.17 Total: -11.09 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -64.16 3.05 -61.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229700425.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.793 kcal (2) G-P(sol) polarization free energy of solvation -64.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds