Wall clock time and date at job start Mon Mar 30 2020 07:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99741 * 2 1 4 4 C 1.52998 * 109.47567 * 59.99554 * 3 2 1 5 5 C 1.53001 * 109.47017 * 299.99470 * 3 2 1 6 6 C 1.53004 * 109.46845 * 180.02562 * 3 2 1 7 7 C 1.52995 * 109.47286 * 64.99633 * 6 3 2 8 8 N 1.46505 * 109.46788 * 179.97438 * 7 6 3 9 9 C 1.38855 * 119.99648 * 179.97438 * 8 7 6 10 10 C 1.39568 * 119.84643 * 359.73541 * 9 8 7 11 11 C 1.36336 * 120.16398 * 179.71732 * 10 9 8 12 12 C 1.40887 * 119.83522 * 0.54986 * 11 10 9 13 13 C 1.41138 * 120.15888 * 179.70431 * 12 11 10 14 14 H 1.07998 * 120.00076 * 204.63105 * 13 12 11 15 15 C 1.39867 * 119.99657 * 24.62602 * 13 12 11 16 16 N 1.30899 * 120.00270 * 17.95962 * 15 13 12 17 17 Si 1.86808 * 119.99673 * 197.95959 * 15 13 12 18 18 H 1.48496 * 109.47088 * 60.00108 * 17 15 13 19 19 H 1.48501 * 109.46866 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46731 * 299.99953 * 17 15 13 21 21 C 1.40883 * 119.68869 * 359.72272 * 12 11 10 22 22 C 1.36343 * 119.84059 * 359.97438 * 21 12 11 23 23 H 1.08995 * 109.47241 * 60.00277 * 1 2 3 24 24 H 1.09003 * 109.47075 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47521 * 300.00028 * 1 2 3 26 26 H 1.08997 * 109.47343 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.47413 * 300.00556 * 4 3 2 28 28 H 1.09003 * 109.46627 * 60.00339 * 4 3 2 29 29 H 1.09004 * 109.47431 * 300.00420 * 5 3 2 30 30 H 1.09001 * 109.46506 * 60.00336 * 5 3 2 31 31 H 1.08995 * 109.47157 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.46820 * 304.99250 * 6 3 2 33 33 H 1.09006 * 109.46674 * 184.99522 * 6 3 2 34 34 H 1.08997 * 109.47083 * 60.00264 * 7 6 3 35 35 H 1.08998 * 109.47410 * 299.99789 * 7 6 3 36 36 H 0.96996 * 120.00184 * 0.02562 * 8 7 6 37 37 H 1.08003 * 119.91446 * 359.97233 * 10 9 8 38 38 H 1.08000 * 120.08688 * 180.27597 * 11 10 9 39 39 H 0.97001 * 120.00134 * 179.97438 * 16 15 13 40 40 H 1.08003 * 120.08598 * 179.97438 * 21 12 11 41 41 H 1.07998 * 119.92670 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0649 1.2491 5 6 1.5588 2.0647 -1.2493 6 6 3.5354 1.1847 -0.0006 7 6 3.9952 0.5369 -1.3082 8 7 5.4557 0.4218 -1.3090 9 6 6.1072 -0.1399 -2.3990 10 6 5.3672 -0.5988 -3.4897 11 6 6.0006 -1.1462 -4.5657 12 6 7.4050 -1.2585 -4.5700 13 6 8.0673 -1.8297 -5.6777 14 1 9.0414 -2.2789 -5.5517 15 6 7.4620 -1.8142 -6.9385 16 7 6.4759 -0.9883 -7.1811 17 14 8.0611 -2.9722 -8.2764 18 1 7.9057 -4.3771 -7.8211 19 1 7.2615 -2.7596 -9.5095 20 1 9.4927 -2.6999 -8.5622 21 6 8.1451 -0.7984 -3.4631 22 6 7.4988 -0.2475 -2.3964 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 2.0023 3.0605 1.2493 27 1 0.4720 2.1509 1.2492 28 1 1.8803 1.5240 2.1391 29 1 1.8804 1.5237 -2.1393 30 1 0.4721 2.1507 -1.2493 31 1 2.0017 3.0606 -1.2491 32 1 3.8514 0.5683 0.8410 33 1 3.9784 2.1766 0.0888 34 1 3.6792 1.1533 -2.1498 35 1 3.5522 -0.4550 -1.3977 36 1 5.9675 0.7373 -0.5478 37 1 4.2903 -0.5163 -3.4829 38 1 5.4270 -1.4968 -5.4110 39 1 6.0564 -0.9773 -8.0556 40 1 9.2219 -0.8818 -3.4593 41 1 8.0648 0.1053 -1.5470 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231025135.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:44 Heat of formation + Delta-G solvation = -33.509867 kcal Electronic energy + Delta-G solvation = -19502.339585 eV Core-core repulsion = 16574.638860 eV Total energy + Delta-G solvation = -2927.700725 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.35726 -37.82578 -35.40869 -33.71193 -32.55409 -29.70119 -29.37943 -27.87511 -27.66330 -26.65338 -24.24195 -22.83236 -20.91076 -19.89856 -19.73868 -17.14050 -16.65285 -16.09180 -15.59187 -15.22130 -14.86134 -14.73030 -14.34221 -13.78639 -13.61851 -13.14108 -12.68424 -12.56301 -12.43270 -12.18501 -12.03263 -11.89748 -11.72465 -11.66649 -11.43796 -11.13006 -10.97208 -10.90898 -10.70970 -10.43545 -10.36307 -9.65558 -9.64122 -9.21458 -9.13768 -8.43832 -7.42093 -6.58130 -6.30896 -3.96971 2.98487 3.16507 3.18116 3.21256 3.42301 3.65688 4.09962 4.27168 4.66035 4.73873 4.83001 4.98066 5.15422 5.21094 5.31191 5.34355 5.43774 5.47884 5.59085 5.62369 5.69456 5.88449 5.88957 5.96957 6.06454 6.33070 6.34871 6.36627 6.44480 7.00845 7.02170 7.14415 7.26699 7.42321 7.62928 7.76047 7.91894 8.21612 8.36591 8.57147 8.78810 8.87769 9.12162 9.22283 10.43365 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031730 B = 0.003712 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.246320 B = 7540.641485 C = 8086.716302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.374 6.374 3 C 0.115 3.885 4 C -0.177 4.177 5 C -0.183 4.183 6 C -0.114 4.114 7 C 0.140 3.860 8 N -0.764 5.764 9 C 0.094 3.906 10 C -0.164 4.164 11 C -0.124 4.124 12 C 0.073 3.927 13 C -0.469 4.469 14 H 0.072 0.928 15 C 0.075 3.925 16 N -0.809 5.809 17 Si 0.902 3.098 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.268 1.268 21 C -0.187 4.187 22 C -0.161 4.161 23 H 0.044 0.956 24 H 0.083 0.917 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.382 0.618 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.276 0.724 40 H 0.091 0.909 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.029 5.298 11.905 17.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.294 6.294 3 C 0.075 3.925 4 C -0.234 4.234 5 C -0.241 4.241 6 C -0.152 4.152 7 C 0.014 3.986 8 N -0.399 5.399 9 C -0.003 4.003 10 C -0.186 4.186 11 C -0.144 4.144 12 C 0.071 3.929 13 C -0.500 4.500 14 H 0.090 0.910 15 C -0.140 4.140 16 N -0.436 5.436 17 Si 0.728 3.272 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.207 4.207 22 C -0.183 4.183 23 H 0.062 0.938 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.214 0.786 37 H 0.106 0.894 38 H 0.136 0.864 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.253 5.187 11.615 16.984 hybrid contribution 0.147 -0.048 -0.409 0.438 sum -11.106 5.140 11.206 16.593 Atomic orbital electron populations 1.22771 0.81908 1.02546 0.99934 1.88030 1.19169 1.27197 1.94962 1.21431 0.93534 0.83356 0.94199 1.22410 1.01669 1.00971 0.98366 1.22519 1.01420 1.01216 0.98919 1.21735 0.92233 1.01784 0.99423 1.21041 0.82311 0.99693 0.95511 1.43885 1.04040 1.72186 1.19836 1.17365 0.91052 1.02807 0.89051 1.20102 0.97098 1.06420 0.94944 1.20932 0.94785 1.01779 0.96885 1.17480 0.91665 0.91678 0.92121 1.19330 1.03999 1.34371 0.92283 0.91031 1.25781 0.94293 0.94331 0.99580 1.69851 1.20850 1.29799 1.23134 0.86476 0.79477 0.81691 0.79593 1.19110 1.20622 1.19318 1.20535 0.97432 1.06258 0.96471 1.19807 0.91888 1.07433 0.99204 0.93794 0.89853 0.94111 0.91438 0.92218 0.91765 0.90742 0.92407 0.91380 0.90847 0.90393 0.93383 0.92782 0.78598 0.89421 0.86429 0.91344 0.89119 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.21 101.05 1.03 1.26 16 2 O -0.37 -4.72 9.88 -35.23 -0.35 -5.06 16 3 C 0.11 1.25 0.82 -90.62 -0.07 1.18 16 4 C -0.18 -1.53 8.25 37.16 0.31 -1.22 16 5 C -0.18 -1.91 7.76 37.16 0.29 -1.62 16 6 C -0.11 -1.38 4.62 -26.73 -0.12 -1.50 16 7 C 0.14 2.22 4.30 -4.04 -0.02 2.20 16 8 N -0.76 -13.95 5.70 -58.50 -0.33 -14.28 16 9 C 0.09 2.15 6.67 -83.69 -0.56 1.59 16 10 C -0.16 -4.01 9.23 -39.77 -0.37 -4.37 16 11 C -0.12 -3.36 8.64 -39.26 -0.34 -3.70 16 12 C 0.07 2.04 5.57 -106.79 -0.60 1.45 16 13 C -0.47 -13.04 9.03 -37.87 -0.34 -13.39 16 14 H 0.07 1.92 7.91 -52.49 -0.41 1.50 16 15 C 0.08 1.98 5.13 -17.34 -0.09 1.89 16 16 N -0.81 -21.93 10.96 55.54 0.61 -21.32 16 17 Si 0.90 19.62 29.60 -169.99 -5.03 14.59 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 C -0.19 -4.77 9.74 -39.26 -0.38 -5.15 16 22 C -0.16 -3.75 9.82 -39.77 -0.39 -4.14 16 23 H 0.04 0.38 6.42 -51.93 -0.33 0.05 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.32 6.42 -51.93 -0.33 -0.02 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.46 6.54 -51.93 -0.34 0.12 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.90 6.34 -51.93 -0.33 0.57 16 30 H 0.06 0.52 6.54 -51.93 -0.34 0.18 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.79 6.14 -51.93 -0.32 0.48 16 35 H 0.05 0.96 7.59 -51.93 -0.39 0.56 16 36 H 0.38 6.13 8.47 -40.82 -0.35 5.79 16 37 H 0.09 1.99 6.68 -52.48 -0.35 1.64 16 38 H 0.12 3.29 6.16 -52.49 -0.32 2.97 16 39 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 40 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 41 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 325.74 15.07 4.91 4.91 Total: -1.00 -29.68 325.74 -8.19 -37.87 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.34 Total: 8.82 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -1.65 Total: -25.52 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.28 Total: -35.60 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.35 Total: -5.06 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.68 -8.19 -37.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231025135.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.361 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds