Wall clock time and date at job start Mon Mar 30 2020 06:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35904 * 117.00082 * 2 1 4 4 C 1.38732 * 120.05480 * 89.99836 * 3 2 1 5 5 C 1.50699 * 120.02825 * 359.95752 * 4 3 2 6 6 C 1.38143 * 119.94594 * 179.97438 * 4 3 2 7 7 C 1.38269 * 120.05184 * 0.02562 * 6 4 3 8 8 C 1.50704 * 119.94088 * 180.02562 * 7 6 4 9 9 N 1.46898 * 109.47041 * 90.00011 * 8 7 6 10 10 C 1.46906 * 110.99888 * 179.97438 * 9 8 7 11 11 C 1.52993 * 109.47378 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47429 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99822 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00339 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99769 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00300 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46692 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47025 * 120.00050 * 16 14 12 19 19 H 1.48505 * 109.46672 * 240.00052 * 16 14 12 20 20 C 1.38265 * 120.11226 * 0.27475 * 7 6 4 21 21 C 1.38140 * 120.05566 * 359.44872 * 20 7 6 22 22 C 1.50698 * 120.03041 * 180.27600 * 21 20 7 23 23 H 1.08997 * 109.47199 * 299.99755 * 1 2 3 24 24 H 1.08999 * 109.47188 * 59.99699 * 1 2 3 25 25 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47514 * 270.02269 * 5 4 3 27 27 H 1.09001 * 109.47054 * 30.02541 * 5 4 3 28 28 H 1.09003 * 109.47374 * 150.02221 * 5 4 3 29 29 H 1.08002 * 119.97263 * 180.02562 * 6 4 3 30 30 H 1.08997 * 109.46924 * 329.99922 * 8 7 6 31 31 H 1.08995 * 109.46962 * 210.00076 * 8 7 6 32 32 H 1.00901 * 111.00121 * 56.04537 * 9 8 7 33 33 H 1.09004 * 109.47040 * 299.99934 * 10 9 8 34 34 H 1.09000 * 109.47033 * 59.99886 * 10 9 8 35 35 H 1.09004 * 109.46862 * 299.99897 * 11 10 9 36 36 H 1.09004 * 109.46998 * 59.99419 * 11 10 9 37 37 H 0.97000 * 120.00540 * 179.97438 * 15 14 12 38 38 H 1.08004 * 119.96897 * 179.70507 * 20 7 6 39 39 H 1.09002 * 109.47250 * 270.27515 * 22 21 20 40 40 H 1.08999 * 109.46762 * 30.27408 * 22 21 20 41 41 H 1.09002 * 109.47156 * 150.27276 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 2.3614 1.8300 1.2008 5 6 2.0193 1.1608 2.5070 6 6 2.9890 3.0606 1.1982 7 6 3.3024 3.6755 0.0000 8 6 3.9876 5.0178 0.0001 9 7 5.4438 4.8241 -0.0005 10 6 6.1464 6.1142 -0.0011 11 6 7.6571 5.8723 -0.0023 12 6 8.3779 7.1957 -0.0035 13 1 7.8148 8.1172 -0.0030 14 6 9.7562 7.2301 -0.0042 15 7 10.4419 6.1079 -0.0043 16 14 10.6497 8.8706 -0.0050 17 1 9.6568 9.9748 -0.0041 18 1 11.5018 8.9707 1.2070 19 1 11.5006 8.9701 -1.2180 20 6 2.9835 3.0634 -1.1980 21 6 2.3610 1.8302 -1.2008 22 6 2.0193 1.1608 -2.5069 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.0213 1.4662 2.8213 27 1 2.0444 0.0787 2.3783 28 1 2.7447 1.4533 3.2661 29 1 3.2352 3.5428 2.1327 30 1 3.6955 5.5748 0.8903 31 1 3.6949 5.5752 -0.8896 32 1 5.7326 4.2551 -0.7821 33 1 5.8686 6.6789 -0.8911 34 1 5.8693 6.6793 0.8889 35 1 7.9353 5.3074 0.8875 36 1 7.9339 5.3073 -0.8925 37 1 11.4116 6.1319 -0.0052 38 1 3.2251 3.5480 -2.1325 39 1 1.0214 1.4663 -2.8217 40 1 2.7451 1.4532 -3.2658 41 1 2.0443 0.0787 -2.3781 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258827666.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:57 Heat of formation + Delta-G solvation = -54.033034 kcal Electronic energy + Delta-G solvation = -19096.349184 eV Core-core repulsion = 16167.758508 eV Total energy + Delta-G solvation = -2928.590676 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.25456 -38.76787 -37.18668 -35.10252 -34.53927 -33.03292 -30.77751 -28.91088 -27.69240 -27.64395 -26.35623 -24.79432 -22.48691 -21.93250 -21.42041 -18.59754 -18.51234 -17.68156 -16.82496 -16.57214 -16.37033 -15.78140 -15.48661 -14.97097 -14.91838 -14.50117 -14.36723 -14.15292 -14.08599 -13.95781 -13.71343 -13.43533 -13.05441 -12.91981 -12.81532 -12.68513 -12.44854 -12.31041 -12.20097 -11.98206 -11.89730 -11.39832 -11.23288 -10.85291 -10.57498 -9.55229 -9.46427 -9.21734 -8.20428 -6.32266 0.18065 0.36959 1.40555 1.41248 1.54601 2.39054 2.44518 2.95810 3.13002 3.51033 3.79072 3.83124 3.86986 4.30240 4.32457 4.43672 4.46246 4.50180 4.50462 4.56921 4.62521 4.67813 4.71929 4.74169 4.75505 4.75682 4.87176 4.95532 5.06406 5.17725 5.33542 5.42205 5.44855 5.54524 5.66201 5.66712 5.77273 5.81330 6.11945 6.25448 6.48808 6.59830 6.85456 7.37221 8.92033 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.038547 B = 0.003075 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.208935 B = 9102.218817 C = 9332.359895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.347 6.347 3 C 0.077 3.923 4 C -0.111 4.111 5 C -0.107 4.107 6 C -0.104 4.104 7 C -0.082 4.082 8 C 0.101 3.899 9 N -0.693 5.693 10 C 0.084 3.916 11 C 0.031 3.969 12 C -0.543 4.543 13 H 0.062 0.938 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.969 3.031 17 H -0.260 1.260 18 H -0.278 1.278 19 H -0.277 1.277 20 C -0.115 4.115 21 C -0.110 4.110 22 C -0.107 4.107 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.113 0.887 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.130 0.870 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.337 0.663 33 H 0.022 0.978 34 H 0.061 0.939 35 H -0.007 1.007 36 H -0.010 1.010 37 H 0.264 0.736 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.144 -10.237 -0.933 25.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.264 6.264 3 C 0.034 3.966 4 C -0.112 4.112 5 C -0.164 4.164 6 C -0.122 4.122 7 C -0.083 4.083 8 C -0.027 4.027 9 N -0.324 5.324 10 C -0.045 4.045 11 C -0.006 4.006 12 C -0.582 4.582 13 H 0.080 0.920 14 C -0.199 4.199 15 N -0.573 5.573 16 Si 0.793 3.207 17 H -0.184 1.184 18 H -0.204 1.204 19 H -0.203 1.203 20 C -0.134 4.134 21 C -0.110 4.110 22 C -0.163 4.163 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.131 0.869 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.148 0.852 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.155 0.845 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.011 0.989 36 H 0.008 0.992 37 H 0.073 0.927 38 H 0.151 0.849 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.875 -10.541 -0.244 25.188 hybrid contribution 0.678 1.086 -0.860 1.542 sum -22.197 -9.456 -1.105 24.153 Atomic orbital electron populations 1.23170 0.77553 1.04515 1.01118 1.85941 1.21332 1.24746 1.94407 1.18465 0.99544 0.86846 0.91780 1.20424 0.99928 0.94726 0.96089 1.20701 1.02458 1.00591 0.92619 1.20959 0.98417 0.94627 0.98211 1.19872 0.98220 0.96663 0.93527 1.20875 0.86962 0.93251 1.01654 1.60554 1.04670 1.16964 1.50208 1.21809 0.94280 0.89314 0.99063 1.18924 0.91110 0.95623 0.94975 1.21645 0.92158 0.93595 1.50786 0.91963 1.26009 0.98756 1.00516 0.94634 1.70122 1.07122 1.28536 1.51499 0.85346 0.78393 0.79178 0.77788 1.18434 1.20380 1.20312 1.20997 0.99523 0.94859 0.98015 1.20389 0.99963 0.94645 0.96029 1.20702 1.02486 1.00603 0.92553 0.93181 0.93154 0.86899 0.89984 0.91097 0.90957 0.85194 0.90044 0.93772 0.84518 0.95931 0.92032 0.98888 0.99165 0.92743 0.84877 0.90039 0.90776 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.13 113.37 1.26 1.67 16 2 O -0.35 -7.51 8.51 -92.47 -0.79 -8.30 16 3 C 0.08 1.88 5.67 22.51 0.13 2.01 16 4 C -0.11 -2.71 5.89 -19.77 -0.12 -2.82 16 5 C -0.11 -2.03 9.79 71.24 0.70 -1.33 16 6 C -0.10 -2.72 9.35 22.25 0.21 -2.51 16 7 C -0.08 -2.23 5.39 -19.85 -0.11 -2.34 16 8 C 0.10 2.93 5.81 85.56 0.50 3.42 16 9 N -0.69 -25.45 6.49 -517.93 -3.36 -28.81 16 10 C 0.08 3.58 5.62 86.30 0.49 4.06 16 11 C 0.03 1.70 5.23 29.84 0.16 1.85 16 12 C -0.54 -31.42 9.11 25.60 0.23 -31.18 16 13 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 14 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 15 N -0.93 -57.82 13.29 21.45 0.28 -57.53 16 16 Si 0.97 44.64 29.54 68.60 2.03 46.66 16 17 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 C -0.12 -2.87 9.35 22.25 0.21 -2.67 16 21 C -0.11 -2.59 5.89 -19.77 -0.12 -2.71 16 22 C -0.11 -1.92 9.79 71.24 0.70 -1.22 16 23 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.34 7.53 -2.39 -0.02 1.32 16 28 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 29 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.08 2.27 8.08 -2.39 -0.02 2.25 16 31 H 0.04 1.19 8.08 -2.39 -0.02 1.17 16 32 H 0.34 12.36 8.72 -89.69 -0.78 11.57 16 33 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 35 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 36 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 41 H 0.07 1.28 7.53 -2.39 -0.02 1.27 16 Total: -1.00 -67.46 344.21 3.07 -64.40 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.21 Total: 16.97 kcal Atomic # 6 Polarization: -38.08 SS G_CDS: 4.69 Total: -33.39 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -3.08 Total: -86.34 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.79 Total: -8.30 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -67.46 3.07 -64.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258827666.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.362 kcal (2) G-P(sol) polarization free energy of solvation -67.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds