Wall clock time and date at job start Mon Mar 30 2020 06:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 112.84615 * 2 1 4 4 N 1.46896 * 109.47599 * 43.22137 * 3 2 1 5 5 C 1.46903 * 110.99920 * 72.50644 * 4 3 2 6 6 C 1.50704 * 109.47109 * 198.83566 * 5 4 3 7 7 H 1.07996 * 119.99891 * 4.95323 * 6 5 4 8 8 C 1.37881 * 119.99766 * 184.95215 * 6 5 4 9 9 N 1.31513 * 119.99862 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00111 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47189 * 89.99945 * 10 8 6 12 12 H 1.48495 * 109.46843 * 209.99753 * 10 8 6 13 13 H 1.48500 * 109.47239 * 329.99904 * 10 8 6 14 14 C 1.46895 * 111.00200 * 196.45914 * 4 3 2 15 15 C 1.50697 * 109.46971 * 75.67938 * 14 4 3 16 16 C 1.34513 * 125.79343 * 84.72228 * 15 14 4 17 17 C 1.41390 * 106.83943 * 179.73435 * 16 15 14 18 18 C 1.34510 * 106.84336 * 0.02562 * 17 16 15 19 19 O 1.34305 * 108.42136 * 359.97438 * 18 17 16 20 20 C 1.53784 * 113.68780 * 131.26367 * 2 1 3 21 21 C 1.53785 * 87.07726 * 89.12991 * 20 2 1 22 22 C 1.53777 * 113.61882 * 228.80145 * 2 1 3 23 23 H 1.09006 * 109.47059 * 64.16763 * 1 2 3 24 24 H 1.09002 * 109.47160 * 184.16545 * 1 2 3 25 25 H 1.08993 * 109.47497 * 304.17055 * 1 2 3 26 26 H 1.09004 * 109.47327 * 283.21708 * 3 2 1 27 27 H 1.09004 * 109.47014 * 163.22299 * 3 2 1 28 28 H 1.09005 * 109.47261 * 318.83299 * 5 4 3 29 29 H 1.08999 * 109.47464 * 78.83067 * 5 4 3 30 30 H 0.96994 * 120.00116 * 179.97438 * 9 8 6 31 31 H 1.08993 * 109.47290 * 315.67477 * 14 4 3 32 32 H 1.09005 * 109.47068 * 195.67508 * 14 4 3 33 33 H 1.07998 * 126.58031 * 359.70435 * 16 15 14 34 34 H 1.08004 * 126.57402 * 179.97438 * 17 16 15 35 35 H 1.08000 * 125.78999 * 179.97438 * 18 17 16 36 36 H 1.08997 * 113.61150 * 203.67712 * 20 2 1 37 37 H 1.08996 * 113.61675 * 334.57835 * 20 2 1 38 38 H 1.08990 * 113.61593 * 270.88126 * 21 20 2 39 39 H 1.09000 * 113.60936 * 139.97709 * 21 20 2 40 40 H 1.09006 * 113.61458 * 25.34875 * 22 2 1 41 41 H 1.08996 * 113.61798 * 156.24736 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1240 1.4100 0.0000 4 7 1.3842 2.2532 0.9484 5 6 1.7013 1.8883 2.3356 6 6 0.6277 2.4163 3.2519 7 1 -0.2463 2.8976 2.8386 8 6 0.7613 2.2849 4.6180 9 7 -0.1753 2.7462 5.4176 10 14 2.2727 1.4518 5.3328 11 1 3.3287 2.4670 5.5769 12 1 1.9148 0.7920 6.6140 13 1 2.7763 0.4342 4.3756 14 6 1.6497 3.6773 0.7049 15 6 0.8911 4.1279 -0.5168 16 6 -0.3905 4.5355 -0.5411 17 6 -0.6890 4.8687 -1.8824 18 6 0.4279 4.6442 -2.5975 19 8 1.3818 4.1958 -1.7652 20 6 2.1478 -0.9288 1.0586 21 6 2.0950 -2.0420 -0.0012 22 6 2.1461 -0.9280 -1.0601 23 1 -0.3633 0.4478 -0.9250 24 1 -0.3633 -1.0250 0.0746 25 1 -0.3634 0.5771 0.8502 26 1 2.0486 1.8361 -1.0005 27 1 3.1719 1.3628 0.2966 28 1 1.7523 0.8029 2.4233 29 1 2.6622 2.3207 2.6145 30 1 -0.0816 2.6535 6.3786 31 1 2.7175 3.8256 0.5448 32 1 1.3273 4.2597 1.5680 33 1 -1.0627 4.5962 0.3020 34 1 -1.6330 5.2328 -2.2603 35 1 0.5388 4.7984 -3.6607 36 1 3.1608 -0.6486 1.3474 37 1 1.4973 -1.1093 1.9143 38 1 1.1595 -2.6013 -0.0006 39 1 2.9744 -2.6859 -0.0021 40 1 1.4941 -1.1080 -1.9149 41 1 3.1586 -0.6477 -1.3506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278267857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:57 Heat of formation + Delta-G solvation = 38.806404 kcal Electronic energy + Delta-G solvation = -20755.654125 eV Core-core repulsion = 17831.089269 eV Total energy + Delta-G solvation = -2924.564856 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.12622 -39.42934 -36.24365 -32.62088 -32.47747 -30.43057 -29.28995 -27.67514 -26.11945 -25.38807 -23.90579 -22.15366 -21.30125 -20.39845 -19.60224 -17.88929 -16.96545 -16.78023 -15.81816 -15.22988 -15.02435 -14.60247 -14.21103 -13.94692 -13.72261 -12.85753 -12.62234 -12.43852 -12.34680 -12.29060 -12.21086 -11.91394 -11.65447 -11.47437 -11.36355 -11.13494 -10.74923 -10.64554 -10.31905 -10.12528 -9.94731 -9.62725 -9.59132 -9.47834 -9.24651 -8.57062 -8.04449 -7.42229 -6.05737 -4.02374 2.12745 3.05446 3.26377 3.35073 3.36615 3.39928 4.40952 4.70140 4.93354 4.99316 5.07706 5.14149 5.25397 5.27760 5.40917 5.45258 5.69281 5.77748 5.89985 5.94024 5.98689 6.03786 6.14580 6.19038 6.21419 6.26098 6.32763 6.42240 6.43259 6.53178 6.56284 6.69519 6.79663 6.84091 6.90768 6.95068 7.16768 7.56760 7.64460 7.86824 7.98684 8.65395 9.05488 9.56764 11.07387 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013574 B = 0.008430 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.261901 B = 3320.869365 C = 4819.587279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.066 4.066 3 C 0.067 3.933 4 N -0.515 5.515 5 C 0.156 3.844 6 C -0.507 4.507 7 H 0.082 0.918 8 C 0.070 3.930 9 N -0.899 5.899 10 Si 0.869 3.131 11 H -0.279 1.279 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.137 3.863 15 C 0.013 3.987 16 C -0.196 4.196 17 C -0.212 4.212 18 C -0.062 4.062 19 O -0.184 6.184 20 C -0.134 4.134 21 C -0.141 4.141 22 C -0.135 4.135 23 H 0.045 0.955 24 H 0.039 0.961 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.025 0.975 28 H 0.045 0.955 29 H -0.016 1.016 30 H 0.263 0.737 31 H 0.036 0.964 32 H 0.117 0.883 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.194 0.806 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.777 -2.380 -13.828 14.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.067 4.067 3 C -0.061 4.061 4 N -0.239 5.239 5 C 0.031 3.969 6 C -0.545 4.545 7 H 0.100 0.900 8 C -0.132 4.132 9 N -0.538 5.538 10 Si 0.697 3.303 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.191 1.191 14 C 0.009 3.991 15 C -0.038 4.038 16 C -0.216 4.216 17 C -0.231 4.231 18 C -0.130 4.130 19 O -0.081 6.081 20 C -0.171 4.171 21 C -0.179 4.179 22 C -0.172 4.172 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.105 0.895 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.001 0.999 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.135 0.865 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.210 0.790 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.529 -2.529 -13.761 14.430 hybrid contribution 1.381 -0.175 0.566 1.502 sum 4.910 -2.704 -13.195 14.336 Atomic orbital electron populations 1.21403 0.92287 1.00282 1.03155 1.21726 0.96649 0.92783 0.95527 1.22096 0.94295 0.93242 0.96482 1.61891 1.56496 1.00292 1.05213 1.20387 0.95100 0.97477 0.83986 1.21047 1.05829 1.37918 0.89721 0.90007 1.24879 0.95965 0.95277 0.97069 1.69887 1.33628 1.46658 1.03660 0.86954 0.83956 0.80416 0.79003 1.20448 1.21230 1.19090 1.20531 0.95572 0.91819 0.91207 1.22695 0.94690 1.02557 0.83810 1.21593 0.96106 1.06203 0.97727 1.21804 0.99623 1.07466 0.94213 1.23801 0.87855 1.05447 0.95889 1.83996 1.39933 1.66357 1.17783 1.23082 1.00850 0.95977 0.97174 1.22805 1.01296 0.96321 0.97435 1.23002 1.00564 0.96899 0.96783 0.93570 0.94188 0.89460 0.91822 0.95693 0.93769 0.99860 0.92719 0.94566 0.86527 0.83346 0.84102 0.78964 0.90838 0.90905 0.90431 0.92248 0.91910 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 8.75 37.16 0.33 -1.60 16 2 C -0.07 -1.07 0.91 -153.70 -0.14 -1.21 16 3 C 0.07 1.18 4.43 -3.83 -0.02 1.16 16 4 N -0.52 -10.31 3.11 -237.52 -0.74 -11.05 16 5 C 0.16 3.58 3.54 -4.97 -0.02 3.56 16 6 C -0.51 -13.70 9.02 -34.44 -0.31 -14.01 16 7 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 8 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 9 N -0.90 -26.90 13.96 55.43 0.77 -26.12 16 10 Si 0.87 21.01 27.37 -169.99 -4.65 16.35 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.15 6.69 56.52 0.38 -5.77 16 14 C 0.14 2.58 5.33 -4.98 -0.03 2.55 16 15 C 0.01 0.23 6.15 -35.63 -0.22 0.01 16 16 C -0.20 -3.39 10.81 -39.70 -0.43 -3.82 16 17 C -0.21 -3.07 10.91 -39.70 -0.43 -3.50 16 18 C -0.06 -0.85 12.09 29.41 0.36 -0.49 16 19 O -0.18 -3.02 10.23 5.68 0.06 -2.97 16 20 C -0.13 -2.15 5.24 -25.91 -0.14 -2.28 16 21 C -0.14 -1.87 7.73 -25.92 -0.20 -2.07 16 22 C -0.13 -1.81 7.23 -25.92 -0.19 -2.00 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.61 7.31 -51.93 -0.38 0.23 16 25 H 0.09 1.76 7.28 -51.93 -0.38 1.38 16 26 H 0.06 1.09 6.99 -51.93 -0.36 0.73 16 27 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 28 H 0.04 1.02 4.24 -51.93 -0.22 0.80 16 29 H -0.02 -0.38 7.17 -51.93 -0.37 -0.75 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.04 0.64 8.00 -51.93 -0.42 0.23 16 32 H 0.12 2.38 7.26 -51.93 -0.38 2.00 16 33 H 0.15 2.62 8.06 -52.49 -0.42 2.20 16 34 H 0.14 1.68 8.06 -52.48 -0.42 1.25 16 35 H 0.19 1.78 8.06 -52.49 -0.42 1.35 16 36 H 0.07 1.19 7.89 -51.93 -0.41 0.78 16 37 H 0.07 1.29 7.56 -51.93 -0.39 0.90 16 38 H 0.08 0.98 7.61 -51.93 -0.39 0.59 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 41 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 325.26 15.07 4.90 4.90 Total: -1.00 -29.16 325.26 -7.83 -37.00 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.64 Total: 3.73 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -1.53 Total: -21.84 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.03 Total: -37.17 kcal Atomic # 8 Polarization: -3.02 SS G_CDS: 0.06 Total: -2.97 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.65 Total: 16.35 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.16 -7.83 -37.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278267857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.803 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds