Wall clock time and date at job start Mon Mar 30 2020 06:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 112.84615 * 2 1 4 4 N 1.46896 * 109.47599 * 43.22137 * 3 2 1 5 5 C 1.46903 * 110.99920 * 72.50644 * 4 3 2 6 6 C 1.50704 * 109.47109 * 198.83566 * 5 4 3 7 7 H 1.07996 * 119.99891 * 4.95323 * 6 5 4 8 8 C 1.37881 * 119.99766 * 184.95215 * 6 5 4 9 9 N 1.31513 * 119.99862 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00111 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47189 * 89.99945 * 10 8 6 12 12 H 1.48495 * 109.46843 * 209.99753 * 10 8 6 13 13 H 1.48500 * 109.47239 * 329.99904 * 10 8 6 14 14 C 1.46895 * 111.00200 * 196.45914 * 4 3 2 15 15 C 1.50697 * 109.46971 * 75.67938 * 14 4 3 16 16 C 1.34513 * 125.79343 * 84.72228 * 15 14 4 17 17 C 1.41390 * 106.83943 * 179.73435 * 16 15 14 18 18 C 1.34510 * 106.84336 * 0.02562 * 17 16 15 19 19 O 1.34305 * 108.42136 * 359.97438 * 18 17 16 20 20 C 1.53784 * 113.68780 * 131.26367 * 2 1 3 21 21 C 1.53785 * 87.07726 * 89.12991 * 20 2 1 22 22 C 1.53777 * 113.61882 * 228.80145 * 2 1 3 23 23 H 1.09006 * 109.47059 * 64.16763 * 1 2 3 24 24 H 1.09002 * 109.47160 * 184.16545 * 1 2 3 25 25 H 1.08993 * 109.47497 * 304.17055 * 1 2 3 26 26 H 1.09004 * 109.47327 * 283.21708 * 3 2 1 27 27 H 1.09004 * 109.47014 * 163.22299 * 3 2 1 28 28 H 1.09005 * 109.47261 * 318.83299 * 5 4 3 29 29 H 1.08999 * 109.47464 * 78.83067 * 5 4 3 30 30 H 0.96994 * 120.00116 * 179.97438 * 9 8 6 31 31 H 1.08993 * 109.47290 * 315.67477 * 14 4 3 32 32 H 1.09005 * 109.47068 * 195.67508 * 14 4 3 33 33 H 1.07998 * 126.58031 * 359.70435 * 16 15 14 34 34 H 1.08004 * 126.57402 * 179.97438 * 17 16 15 35 35 H 1.08000 * 125.78999 * 179.97438 * 18 17 16 36 36 H 1.08997 * 113.61150 * 203.67712 * 20 2 1 37 37 H 1.08996 * 113.61675 * 334.57835 * 20 2 1 38 38 H 1.08990 * 113.61593 * 270.88126 * 21 20 2 39 39 H 1.09000 * 113.60936 * 139.97709 * 21 20 2 40 40 H 1.09006 * 113.61458 * 25.34875 * 22 2 1 41 41 H 1.08996 * 113.61798 * 156.24736 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1240 1.4100 0.0000 4 7 1.3842 2.2532 0.9484 5 6 1.7013 1.8883 2.3356 6 6 0.6277 2.4163 3.2519 7 1 -0.2463 2.8976 2.8386 8 6 0.7613 2.2849 4.6180 9 7 -0.1753 2.7462 5.4176 10 14 2.2727 1.4518 5.3328 11 1 3.3287 2.4670 5.5769 12 1 1.9148 0.7920 6.6140 13 1 2.7763 0.4342 4.3756 14 6 1.6497 3.6773 0.7049 15 6 0.8911 4.1279 -0.5168 16 6 -0.3905 4.5355 -0.5411 17 6 -0.6890 4.8687 -1.8824 18 6 0.4279 4.6442 -2.5975 19 8 1.3818 4.1958 -1.7652 20 6 2.1478 -0.9288 1.0586 21 6 2.0950 -2.0420 -0.0012 22 6 2.1461 -0.9280 -1.0601 23 1 -0.3633 0.4478 -0.9250 24 1 -0.3633 -1.0250 0.0746 25 1 -0.3634 0.5771 0.8502 26 1 2.0486 1.8361 -1.0005 27 1 3.1719 1.3628 0.2966 28 1 1.7523 0.8029 2.4233 29 1 2.6622 2.3207 2.6145 30 1 -0.0816 2.6535 6.3786 31 1 2.7175 3.8256 0.5448 32 1 1.3273 4.2597 1.5680 33 1 -1.0627 4.5962 0.3020 34 1 -1.6330 5.2328 -2.2603 35 1 0.5388 4.7984 -3.6607 36 1 3.1608 -0.6486 1.3474 37 1 1.4973 -1.1093 1.9143 38 1 1.1595 -2.6013 -0.0006 39 1 2.9744 -2.6859 -0.0021 40 1 1.4941 -1.1080 -1.9149 41 1 3.1586 -0.6477 -1.3506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278267857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:56 Heat of formation + Delta-G solvation = 22.577566 kcal Electronic energy + Delta-G solvation = -20756.357860 eV Core-core repulsion = 17831.089269 eV Total energy + Delta-G solvation = -2925.268591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.37910 -40.70408 -37.77559 -34.65205 -33.82362 -31.79480 -30.86292 -29.29878 -27.50643 -26.61498 -25.46860 -23.66274 -22.57241 -21.82122 -21.02501 -19.24392 -18.76919 -18.20237 -17.22566 -16.53849 -16.45072 -16.27675 -15.58849 -15.44051 -15.23474 -14.48339 -14.14952 -14.08096 -13.67820 -13.64876 -13.53888 -13.21303 -13.11397 -12.99247 -12.84211 -12.48787 -12.44783 -12.27630 -11.83175 -11.77542 -11.54175 -11.29966 -10.86708 -10.83331 -10.74981 -10.66002 -9.32205 -9.01360 -8.24774 -6.25923 0.88375 1.33642 1.35746 1.45924 1.79587 2.15772 2.35420 3.09334 3.27106 3.70321 3.79684 3.85068 3.97984 4.01888 4.17875 4.23739 4.36159 4.45608 4.62821 4.63287 4.71708 4.80581 4.86085 4.89968 4.99116 4.99981 5.03697 5.07315 5.12642 5.15152 5.16395 5.28509 5.30264 5.41627 5.58459 5.63024 5.69344 5.75551 6.03788 6.26769 6.38116 6.67484 6.80846 7.36921 8.91983 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013574 B = 0.008430 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.261901 B = 3320.869365 C = 4819.587279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.078 4.078 3 C 0.071 3.929 4 N -0.526 5.526 5 C 0.169 3.831 6 C -0.504 4.504 7 H 0.038 0.962 8 C 0.011 3.989 9 N -0.948 5.948 10 Si 0.936 3.064 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.247 1.247 14 C 0.140 3.860 15 C -0.007 4.007 16 C -0.213 4.213 17 C -0.224 4.224 18 C -0.040 4.040 19 O -0.190 6.190 20 C -0.144 4.144 21 C -0.128 4.128 22 C -0.120 4.120 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.030 0.970 28 H 0.049 0.951 29 H -0.016 1.016 30 H 0.265 0.735 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.129 0.871 34 H 0.167 0.833 35 H 0.244 0.756 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.662 -3.738 -16.502 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.078 4.078 3 C -0.057 4.057 4 N -0.250 5.250 5 C 0.043 3.957 6 C -0.543 4.543 7 H 0.056 0.944 8 C -0.186 4.186 9 N -0.589 5.589 10 Si 0.760 3.240 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.170 1.170 14 C 0.013 3.987 15 C -0.057 4.057 16 C -0.233 4.233 17 C -0.243 4.243 18 C -0.107 4.107 19 O -0.087 6.087 20 C -0.181 4.181 21 C -0.165 4.165 22 C -0.157 4.157 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.002 0.998 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.147 0.853 34 H 0.185 0.815 35 H 0.260 0.740 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.420 -3.888 -16.463 17.763 hybrid contribution 0.671 0.344 1.299 1.502 sum 6.091 -3.544 -15.163 16.721 Atomic orbital electron populations 1.21264 0.93261 1.00389 1.01345 1.21824 0.95950 0.92473 0.97584 1.22149 0.94261 0.93534 0.95766 1.61789 1.57616 1.01365 1.04200 1.20107 0.93245 0.97265 0.85098 1.21228 1.05459 1.36952 0.90640 0.94407 1.25741 0.99256 0.96131 0.97497 1.70045 1.36133 1.48727 1.04030 0.85879 0.79936 0.79819 0.78373 1.19554 1.21002 1.17039 1.20323 0.96359 0.90865 0.91199 1.22293 0.94712 1.04399 0.84293 1.21696 0.96017 1.06656 0.98976 1.22083 1.01430 1.08105 0.92677 1.24764 0.86442 1.02204 0.97301 1.83985 1.40732 1.66686 1.17263 1.23123 1.00185 0.97792 0.97036 1.22756 1.02543 0.95826 0.95379 1.22937 1.01176 0.95252 0.96374 0.93313 0.92695 0.93646 0.91225 0.95154 0.93286 0.99834 0.92649 0.93318 0.89425 0.85314 0.81545 0.74026 0.90872 0.93298 0.89867 0.90268 0.90615 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.52 8.75 71.98 0.63 -2.89 16 2 C -0.08 -2.39 0.91 -51.65 -0.05 -2.44 16 3 C 0.07 2.39 4.43 86.30 0.38 2.77 16 4 N -0.53 -21.51 3.11 -905.36 -2.82 -24.33 16 5 C 0.17 7.92 3.54 85.56 0.30 8.22 16 6 C -0.50 -28.67 9.02 25.60 0.23 -28.44 16 7 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 8 C 0.01 0.62 5.47 84.66 0.46 1.09 16 9 N -0.95 -59.18 13.96 21.45 0.30 -58.89 16 10 Si 0.94 43.82 27.37 68.60 1.88 45.69 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 13 H -0.25 -10.69 6.69 99.48 0.67 -10.02 16 14 C 0.14 5.47 5.33 85.56 0.46 5.93 16 15 C -0.01 -0.24 6.15 24.83 0.15 -0.09 16 16 C -0.21 -7.56 10.81 22.19 0.24 -7.32 16 17 C -0.22 -6.11 10.91 22.19 0.24 -5.87 16 18 C -0.04 -0.96 12.09 66.97 0.81 -0.15 16 19 O -0.19 -5.88 10.23 -2.60 -0.03 -5.91 16 20 C -0.14 -4.39 5.24 31.12 0.16 -4.23 16 21 C -0.13 -2.96 7.73 31.12 0.24 -2.72 16 22 C -0.12 -2.78 7.23 31.12 0.23 -2.56 16 23 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 24 H 0.05 1.63 7.31 -2.39 -0.02 1.61 16 25 H 0.04 1.89 7.28 -2.39 -0.02 1.87 16 26 H 0.07 2.27 6.99 -2.38 -0.02 2.25 16 27 H 0.03 1.00 7.74 -2.38 -0.02 0.98 16 28 H 0.05 2.26 4.24 -2.38 -0.01 2.25 16 29 H -0.02 -0.75 7.17 -2.39 -0.02 -0.76 16 30 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 31 H 0.05 1.73 8.00 -2.39 -0.02 1.72 16 32 H 0.09 3.85 7.26 -2.38 -0.02 3.84 16 33 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 34 H 0.17 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.24 3.15 8.06 -2.91 -0.02 3.12 16 36 H 0.07 2.22 7.89 -2.39 -0.02 2.20 16 37 H 0.05 1.70 7.56 -2.39 -0.02 1.68 16 38 H 0.08 1.84 7.61 -2.39 -0.02 1.83 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 1.60 8.10 -2.38 -0.02 1.58 16 41 H 0.09 1.84 8.10 -2.39 -0.02 1.82 16 Total: -1.00 -66.25 325.26 4.77 -61.48 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.95 Total: 20.63 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: 4.49 Total: -38.69 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -2.52 Total: -83.21 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.03 Total: -5.91 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.69 kcal Total: -66.25 4.77 -61.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278267857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.053 kcal (2) G-P(sol) polarization free energy of solvation -66.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds