Wall clock time and date at job start Mon Mar 30 2020 06:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38150 * 120.02620 * 2 1 4 4 C 1.38265 * 120.05296 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.94041 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.47000 * 89.99966 * 5 4 3 7 7 C 1.46900 * 111.00065 * 293.95478 * 6 5 4 8 8 C 1.46898 * 110.99774 * 169.99646 * 6 5 4 9 9 H 1.08995 * 109.46948 * 60.00708 * 8 6 5 10 10 C 1.52994 * 109.47448 * 300.00145 * 8 6 5 11 11 C 1.50701 * 109.47073 * 180.02562 * 8 6 5 12 12 H 1.08007 * 119.99894 * 0.02562 * 11 8 6 13 13 C 1.37878 * 120.00211 * 180.02562 * 11 8 6 14 14 N 1.31513 * 119.99751 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 119.99990 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47133 * 59.99670 * 15 13 11 17 17 H 1.48497 * 109.46727 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46752 * 299.99616 * 15 13 11 19 19 C 1.38264 * 120.11373 * 0.02562 * 4 3 2 20 20 C 1.38147 * 120.05455 * 359.97438 * 19 4 3 21 21 C 1.50699 * 120.02436 * 180.02562 * 20 19 4 22 22 C 1.38731 * 120.02762 * 179.97438 * 2 1 3 23 23 O 1.35897 * 120.05696 * 0.02562 * 22 2 1 24 24 H 1.08998 * 109.46556 * 90.00097 * 1 2 3 25 25 H 1.08991 * 109.47028 * 209.99826 * 1 2 3 26 26 H 1.08999 * 109.47022 * 330.00490 * 1 2 3 27 27 H 1.08002 * 119.97142 * 0.24850 * 3 2 1 28 28 H 1.08996 * 109.46642 * 209.99806 * 5 4 3 29 29 H 1.09001 * 109.46987 * 329.99854 * 5 4 3 30 30 H 1.08994 * 109.47549 * 59.99974 * 7 6 5 31 31 H 1.09003 * 109.47121 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.47031 * 299.99610 * 7 6 5 33 33 H 1.09000 * 109.47344 * 60.00233 * 10 8 6 34 34 H 1.09004 * 109.47383 * 180.02562 * 10 8 6 35 35 H 1.09000 * 109.47184 * 299.99888 * 10 8 6 36 36 H 0.97000 * 119.99976 * 180.02562 * 14 13 11 37 37 H 1.07998 * 119.97093 * 179.97438 * 19 4 3 38 38 H 1.09001 * 109.47261 * 90.00002 * 21 20 19 39 39 H 1.09007 * 109.46933 * 209.99704 * 21 20 19 40 40 H 1.08994 * 109.47199 * 329.99715 * 21 20 19 41 41 H 0.96707 * 113.99934 * 269.99604 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1961 0.0000 4 6 3.5810 1.1967 0.0005 5 6 4.3326 2.5030 -0.0001 6 7 4.5762 2.9283 1.3847 7 6 3.3153 3.2509 2.0660 8 6 5.5052 4.0654 1.4305 9 1 5.0813 4.9032 0.8770 10 6 6.8389 3.6600 0.7999 11 6 5.7309 4.4723 2.8638 12 1 5.2342 3.9393 3.6611 13 6 6.5714 5.5251 3.1574 14 7 7.1766 6.1738 2.1866 15 14 6.8517 6.0290 4.9342 16 1 7.4301 4.8873 5.6872 17 1 7.7897 7.1793 4.9803 18 1 5.5574 6.4215 5.5474 19 6 4.2753 0.0010 0.0005 20 6 3.5886 -1.1977 0.0005 21 6 4.3460 -2.5005 0.0011 22 6 2.2013 -1.2011 0.0005 23 8 1.5236 -2.3790 0.0005 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6583 2.1314 0.0041 28 1 5.2853 2.3737 -0.5134 29 1 3.7425 3.2614 -0.5146 30 1 2.6735 2.3700 2.0788 31 1 3.5247 3.5632 3.0891 32 1 2.8122 4.0593 1.5355 33 1 6.6761 3.3654 -0.2368 34 1 7.5284 4.5036 0.8342 35 1 7.2627 2.8221 1.3535 36 1 7.7682 6.9142 2.3931 37 1 5.3552 0.0042 0.0005 38 1 4.5282 -2.8144 1.0289 39 1 3.7593 -3.2621 -0.5128 40 1 5.2981 -2.3675 -0.5124 41 1 1.3271 -2.7198 0.8840 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289458608.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:19 Heat of formation + Delta-G solvation = -23.588019 kcal Electronic energy + Delta-G solvation = -20038.692320 eV Core-core repulsion = 17111.421839 eV Total energy + Delta-G solvation = -2927.270481 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.02743 -37.54962 -36.05821 -33.50273 -32.97561 -31.19500 -29.06311 -27.61562 -26.58561 -26.23985 -24.60769 -23.20826 -20.82992 -20.56322 -19.21554 -18.17927 -16.34212 -16.13873 -15.60915 -15.14896 -14.39104 -14.05432 -13.92962 -13.73569 -13.27812 -13.17446 -12.96926 -12.83923 -12.46401 -12.38367 -12.08408 -11.98767 -11.65696 -11.34917 -11.13566 -11.02284 -10.92752 -10.69018 -10.45379 -10.27177 -10.13436 -10.01227 -9.81317 -8.89417 -8.44620 -8.40973 -8.15872 -7.16812 -6.01382 -4.05902 1.41497 1.51131 3.31847 3.36201 3.39108 3.72745 4.32396 4.41461 4.85011 4.89901 5.02304 5.23338 5.32861 5.40061 5.47758 5.59814 5.62697 5.64804 5.69745 5.79904 5.86983 5.98249 6.10551 6.21040 6.30626 6.33213 6.42093 6.57653 6.63499 6.78485 6.82981 6.94492 7.02098 7.04938 7.15106 7.51210 7.70626 7.71530 7.82418 8.20019 8.31959 8.59215 9.00189 9.58960 11.05379 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029757 B = 0.004424 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.735376 B = 6327.206650 C = 6582.653019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.110 4.110 3 C -0.107 4.107 4 C -0.057 4.057 5 C 0.084 3.916 6 N -0.530 5.530 7 C 0.035 3.965 8 C 0.212 3.788 9 H -0.002 1.002 10 C -0.134 4.134 11 C -0.503 4.503 12 H 0.063 0.937 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.092 4.092 20 C -0.109 4.109 21 C -0.109 4.109 22 C 0.086 3.914 23 O -0.496 6.496 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.121 0.879 28 H 0.084 0.916 29 H 0.030 0.970 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.009 0.991 33 H 0.008 0.992 34 H 0.085 0.915 35 H 0.034 0.966 36 H 0.261 0.739 37 H 0.126 0.874 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.458 -13.253 -4.356 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.111 4.111 3 C -0.126 4.126 4 C -0.057 4.057 5 C -0.044 4.044 6 N -0.255 5.255 7 C -0.114 4.114 8 C 0.106 3.894 9 H 0.016 0.984 10 C -0.192 4.192 11 C -0.542 4.542 12 H 0.081 0.919 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.110 4.110 20 C -0.109 4.109 21 C -0.166 4.166 22 C 0.042 3.958 23 O -0.305 6.305 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.139 0.861 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.104 0.896 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.144 0.856 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -9.059 -13.406 -4.745 16.861 hybrid contribution -0.196 1.019 1.058 1.482 sum -9.255 -12.387 -3.687 15.896 Atomic orbital electron populations 1.20603 0.91086 1.02266 1.02129 1.20085 0.96271 0.92520 1.02220 1.20846 0.93732 0.96910 1.01073 1.19991 0.93221 0.95618 0.96903 1.21143 0.98870 0.91733 0.92682 1.62165 1.12004 1.39803 1.11481 1.22280 0.91018 0.97486 1.00597 1.19261 0.88352 0.85198 0.96591 0.98430 1.21866 1.00550 1.01647 0.95115 1.21111 1.26996 1.14400 0.91687 0.91916 1.24926 0.95720 0.96263 0.97286 1.69880 1.30323 1.21829 1.31256 0.86582 0.77987 0.77975 0.84986 1.20220 1.21355 1.20367 1.20829 1.00004 0.90618 0.99599 1.20140 0.92892 0.96017 1.01895 1.20650 0.99587 0.94224 1.02095 1.18002 0.89171 0.84574 1.04097 1.84790 1.76514 1.36255 1.32920 0.91441 0.91784 0.91769 0.86129 0.89807 0.95186 0.93545 0.90531 0.97266 0.97271 0.89616 0.94634 0.92932 0.85596 0.91517 0.91308 0.91564 0.76420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 9.79 36.01 0.35 -0.76 16 2 C -0.11 -1.49 5.89 -104.47 -0.62 -2.11 16 3 C -0.11 -1.59 7.62 -39.60 -0.30 -1.89 16 4 C -0.06 -0.93 4.88 -104.60 -0.51 -1.44 16 5 C 0.08 1.55 4.93 -4.98 -0.02 1.52 16 6 N -0.53 -11.46 4.61 -237.74 -1.10 -12.56 16 7 C 0.03 0.70 8.85 60.06 0.53 1.23 16 8 C 0.21 5.34 2.06 -68.87 -0.14 5.19 16 9 H 0.00 -0.05 8.14 -51.93 -0.42 -0.48 16 10 C -0.13 -3.24 8.76 37.15 0.33 -2.92 16 11 C -0.50 -13.73 7.88 -34.44 -0.27 -14.00 16 12 H 0.06 1.71 6.41 -52.48 -0.34 1.37 16 13 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 14 N -0.89 -25.36 11.32 55.43 0.63 -24.74 16 15 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 C -0.09 -1.41 9.35 -39.61 -0.37 -1.78 16 20 C -0.11 -1.50 5.89 -104.47 -0.62 -2.12 16 21 C -0.11 -1.20 9.79 36.00 0.35 -0.85 16 22 C 0.09 1.16 6.65 -39.22 -0.26 0.90 16 23 O -0.50 -5.57 11.60 -19.42 -0.23 -5.79 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.61 7.53 -51.93 -0.39 0.21 16 26 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 27 H 0.12 1.70 8.02 -52.49 -0.42 1.28 16 28 H 0.08 1.55 5.77 -51.93 -0.30 1.25 16 29 H 0.03 0.55 8.06 -51.93 -0.42 0.13 16 30 H 0.05 0.83 6.16 -51.93 -0.32 0.51 16 31 H 0.08 1.64 6.10 -51.93 -0.32 1.32 16 32 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 34 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.13 1.88 8.06 -52.49 -0.42 1.45 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 40 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 41 H 0.38 2.67 9.06 45.56 0.41 3.08 16 LS Contribution 326.22 15.07 4.92 4.92 Total: -1.00 -29.74 326.22 -8.07 -37.81 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.63 Total: 1.62 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -1.64 Total: -17.49 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.47 Total: -37.30 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.23 Total: -5.79 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.74 -8.07 -37.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289458608.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.224 kcal (2) G-P(sol) polarization free energy of solvation -29.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds