Wall clock time and date at job start Mon Mar 30 2020 06:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38150 * 120.02620 * 2 1 4 4 C 1.38265 * 120.05296 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.94041 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.47000 * 89.99966 * 5 4 3 7 7 C 1.46900 * 111.00065 * 293.95478 * 6 5 4 8 8 C 1.46898 * 110.99774 * 169.99646 * 6 5 4 9 9 H 1.08995 * 109.46948 * 60.00708 * 8 6 5 10 10 C 1.52994 * 109.47448 * 300.00145 * 8 6 5 11 11 C 1.50701 * 109.47073 * 180.02562 * 8 6 5 12 12 H 1.08007 * 119.99894 * 0.02562 * 11 8 6 13 13 C 1.37878 * 120.00211 * 180.02562 * 11 8 6 14 14 N 1.31513 * 119.99751 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 119.99990 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47133 * 59.99670 * 15 13 11 17 17 H 1.48497 * 109.46727 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46752 * 299.99616 * 15 13 11 19 19 C 1.38264 * 120.11373 * 0.02562 * 4 3 2 20 20 C 1.38147 * 120.05455 * 359.97438 * 19 4 3 21 21 C 1.50699 * 120.02436 * 180.02562 * 20 19 4 22 22 C 1.38731 * 120.02762 * 179.97438 * 2 1 3 23 23 O 1.35897 * 120.05696 * 0.02562 * 22 2 1 24 24 H 1.08998 * 109.46556 * 90.00097 * 1 2 3 25 25 H 1.08991 * 109.47028 * 209.99826 * 1 2 3 26 26 H 1.08999 * 109.47022 * 330.00490 * 1 2 3 27 27 H 1.08002 * 119.97142 * 0.24850 * 3 2 1 28 28 H 1.08996 * 109.46642 * 209.99806 * 5 4 3 29 29 H 1.09001 * 109.46987 * 329.99854 * 5 4 3 30 30 H 1.08994 * 109.47549 * 59.99974 * 7 6 5 31 31 H 1.09003 * 109.47121 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.47031 * 299.99610 * 7 6 5 33 33 H 1.09000 * 109.47344 * 60.00233 * 10 8 6 34 34 H 1.09004 * 109.47383 * 180.02562 * 10 8 6 35 35 H 1.09000 * 109.47184 * 299.99888 * 10 8 6 36 36 H 0.97000 * 119.99976 * 180.02562 * 14 13 11 37 37 H 1.07998 * 119.97093 * 179.97438 * 19 4 3 38 38 H 1.09001 * 109.47261 * 90.00002 * 21 20 19 39 39 H 1.09007 * 109.46933 * 209.99704 * 21 20 19 40 40 H 1.08994 * 109.47199 * 329.99715 * 21 20 19 41 41 H 0.96707 * 113.99934 * 269.99604 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1961 0.0000 4 6 3.5810 1.1967 0.0005 5 6 4.3326 2.5030 -0.0001 6 7 4.5762 2.9283 1.3847 7 6 3.3153 3.2509 2.0660 8 6 5.5052 4.0654 1.4305 9 1 5.0813 4.9032 0.8770 10 6 6.8389 3.6600 0.7999 11 6 5.7309 4.4723 2.8638 12 1 5.2342 3.9393 3.6611 13 6 6.5714 5.5251 3.1574 14 7 7.1766 6.1738 2.1866 15 14 6.8517 6.0290 4.9342 16 1 7.4301 4.8873 5.6872 17 1 7.7897 7.1793 4.9803 18 1 5.5574 6.4215 5.5474 19 6 4.2753 0.0010 0.0005 20 6 3.5886 -1.1977 0.0005 21 6 4.3460 -2.5005 0.0011 22 6 2.2013 -1.2011 0.0005 23 8 1.5236 -2.3790 0.0005 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6583 2.1314 0.0041 28 1 5.2853 2.3737 -0.5134 29 1 3.7425 3.2614 -0.5146 30 1 2.6735 2.3700 2.0788 31 1 3.5247 3.5632 3.0891 32 1 2.8122 4.0593 1.5355 33 1 6.6761 3.3654 -0.2368 34 1 7.5284 4.5036 0.8342 35 1 7.2627 2.8221 1.3535 36 1 7.7682 6.9142 2.3931 37 1 5.3552 0.0042 0.0005 38 1 4.5282 -2.8144 1.0289 39 1 3.7593 -3.2621 -0.5128 40 1 5.2981 -2.3675 -0.5124 41 1 1.3271 -2.7198 0.8840 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289458608.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:18 Heat of formation + Delta-G solvation = -42.326086 kcal Electronic energy + Delta-G solvation = -20039.504864 eV Core-core repulsion = 17111.421839 eV Total energy + Delta-G solvation = -2928.083025 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.10426 -39.00629 -37.33425 -34.87140 -34.47343 -32.56107 -30.89945 -28.86772 -27.69317 -27.53123 -26.46404 -24.83804 -22.02880 -21.84561 -20.86006 -19.15620 -18.35596 -17.36192 -16.98471 -16.55297 -15.86051 -15.78481 -15.51996 -14.81733 -14.61552 -14.25085 -14.08626 -13.99795 -13.85098 -13.71972 -13.40267 -13.11475 -12.94582 -12.81902 -12.80138 -12.65937 -12.40624 -12.30756 -12.09538 -12.03012 -11.93050 -11.53353 -11.24645 -10.89260 -10.51326 -9.48098 -9.31276 -8.92018 -8.10705 -6.22714 0.31177 0.42262 1.43018 1.44677 1.52273 2.42100 2.62818 3.17527 3.38084 3.52967 3.84425 3.89245 3.93756 4.33097 4.37334 4.52530 4.54784 4.68326 4.69739 4.71430 4.73438 4.81331 4.82939 4.91251 4.96171 5.01295 5.02961 5.07557 5.24310 5.25547 5.37916 5.48399 5.52095 5.57860 5.71995 5.74650 5.79270 5.98027 6.25645 6.38684 6.71286 6.90351 6.91280 7.46278 8.95000 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029757 B = 0.004424 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.735376 B = 6327.206650 C = 6582.653019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.114 4.114 3 C -0.115 4.115 4 C -0.075 4.075 5 C 0.089 3.911 6 N -0.536 5.536 7 C 0.042 3.958 8 C 0.216 3.784 9 H -0.037 1.037 10 C -0.122 4.122 11 C -0.520 4.520 12 H 0.059 0.941 13 C 0.012 3.988 14 N -0.920 5.920 15 Si 0.960 3.040 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.272 1.272 19 C -0.105 4.105 20 C -0.114 4.114 21 C -0.106 4.106 22 C 0.091 3.909 23 O -0.496 6.496 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.124 0.876 28 H 0.079 0.921 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.007 0.993 33 H 0.031 0.969 34 H 0.060 0.940 35 H 0.032 0.968 36 H 0.262 0.738 37 H 0.123 0.877 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.664 -15.056 -3.798 18.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.114 4.114 3 C -0.133 4.133 4 C -0.076 4.076 5 C -0.038 4.038 6 N -0.260 5.260 7 C -0.106 4.106 8 C 0.109 3.891 9 H -0.020 1.020 10 C -0.180 4.180 11 C -0.558 4.558 12 H 0.077 0.923 13 C -0.187 4.187 14 N -0.560 5.560 15 Si 0.785 3.215 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.124 4.124 20 C -0.115 4.115 21 C -0.162 4.162 22 C 0.046 3.954 23 O -0.308 6.308 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.142 0.858 28 H 0.097 0.903 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.026 0.974 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.141 0.859 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -10.284 -15.234 -4.179 18.849 hybrid contribution 0.100 1.475 0.830 1.696 sum -10.184 -13.759 -3.348 17.442 Atomic orbital electron populations 1.20658 0.89009 1.03417 1.02837 1.20380 0.97826 0.92003 1.01215 1.20909 0.93175 0.97820 1.01431 1.19796 0.93827 0.94581 0.99392 1.21082 0.99032 0.93020 0.90691 1.62101 1.12390 1.37821 1.13692 1.22214 0.90685 0.98471 0.99279 1.19068 0.89380 0.85369 0.95299 1.01984 1.21675 0.99499 1.00324 0.96465 1.21385 1.27101 1.14724 0.92595 0.92291 1.25703 0.95450 0.96249 1.01250 1.70012 1.30726 1.22142 1.33122 0.85584 0.78034 0.77657 0.80191 1.19715 1.20947 1.19688 1.20887 1.00053 0.91056 1.00359 1.20413 0.93467 0.96465 1.01112 1.20679 0.99592 0.92953 1.02993 1.18098 0.89191 0.85309 1.02808 1.84737 1.76047 1.35199 1.34814 0.90846 0.90262 0.91054 0.85846 0.90314 0.95516 0.91146 0.92264 0.97422 0.95030 0.92079 0.94922 0.92922 0.85887 0.90385 0.90484 0.91122 0.73886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.90 9.79 71.24 0.70 -1.20 16 2 C -0.11 -2.82 5.89 -19.77 -0.12 -2.94 16 3 C -0.11 -3.28 7.62 22.26 0.17 -3.11 16 4 C -0.08 -2.42 4.88 -19.85 -0.10 -2.52 16 5 C 0.09 3.34 4.93 85.56 0.42 3.76 16 6 N -0.54 -23.44 4.61 -906.06 -4.18 -27.62 16 7 C 0.04 1.68 8.85 127.69 1.13 2.81 16 8 C 0.22 11.15 2.06 44.17 0.09 11.24 16 9 H -0.04 -2.15 8.14 -2.39 -0.02 -2.17 16 10 C -0.12 -6.02 8.76 71.98 0.63 -5.38 16 11 C -0.52 -28.81 7.88 25.60 0.20 -28.61 16 12 H 0.06 3.25 6.41 -2.91 -0.02 3.23 16 13 C 0.01 0.67 5.30 84.66 0.45 1.12 16 14 N -0.92 -53.18 11.32 21.45 0.24 -52.94 16 15 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 C -0.10 -3.13 9.35 22.25 0.21 -2.93 16 20 C -0.11 -2.92 5.89 -19.77 -0.12 -3.04 16 21 C -0.11 -2.08 9.79 71.24 0.70 -1.38 16 22 C 0.09 2.20 6.65 22.51 0.15 2.35 16 23 O -0.50 -9.43 11.60 -92.39 -1.07 -10.50 16 24 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.08 1.22 7.53 -2.39 -0.02 1.20 16 26 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 27 H 0.12 3.36 8.02 -2.91 -0.02 3.34 16 28 H 0.08 2.96 5.77 -2.39 -0.01 2.95 16 29 H 0.03 1.00 8.06 -2.39 -0.02 0.98 16 30 H 0.07 2.46 6.16 -2.39 -0.01 2.45 16 31 H 0.06 2.56 6.10 -2.39 -0.01 2.55 16 32 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.03 1.37 6.20 -2.39 -0.01 1.35 16 34 H 0.06 3.33 6.07 -2.38 -0.01 3.31 16 35 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 37 H 0.12 3.64 8.06 -2.91 -0.02 3.61 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.39 7.53 -2.38 -0.02 1.37 16 40 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 41 H 0.40 4.10 9.06 -74.05 -0.67 3.43 16 Total: -1.00 -63.51 326.22 1.88 -61.62 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.35 Total: 13.49 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 4.52 Total: -29.82 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -3.94 Total: -80.56 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -1.07 Total: -10.50 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -63.51 1.88 -61.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289458608.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.298 kcal (2) G-P(sol) polarization free energy of solvation -63.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds