Wall clock time and date at job start Mon Mar 30 2020 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38140 * 120.02988 * 2 1 4 4 C 1.38264 * 120.05823 * 180.25603 * 3 2 1 5 5 C 1.50698 * 119.94803 * 179.74264 * 4 3 2 6 6 N 1.46902 * 109.47187 * 270.02407 * 5 4 3 7 7 C 1.46892 * 111.00067 * 66.04684 * 6 5 4 8 8 C 1.46910 * 110.99852 * 190.00145 * 6 5 4 9 9 H 1.09004 * 109.46470 * 299.99569 * 8 6 5 10 10 C 1.52990 * 109.47150 * 59.99868 * 8 6 5 11 11 C 1.50701 * 109.47030 * 180.02562 * 8 6 5 12 12 H 1.08004 * 119.99470 * 359.97438 * 11 8 6 13 13 C 1.37869 * 120.00048 * 179.97438 * 11 8 6 14 14 N 1.31521 * 119.99950 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99998 * 179.97438 * 13 11 8 16 16 H 1.48496 * 109.47110 * 89.99964 * 15 13 11 17 17 H 1.48501 * 109.47023 * 209.99921 * 15 13 11 18 18 H 1.48495 * 109.47111 * 329.99480 * 15 13 11 19 19 C 1.38269 * 120.10764 * 359.76658 * 4 3 2 20 20 C 1.38137 * 120.06013 * 359.97438 * 19 4 3 21 21 C 1.50702 * 120.03224 * 180.02562 * 20 19 4 22 22 C 1.38734 * 120.02664 * 179.74571 * 2 1 3 23 23 O 1.35896 * 120.05666 * 359.97438 * 22 2 1 24 24 H 1.08998 * 109.47130 * 270.25473 * 1 2 3 25 25 H 1.08997 * 109.46616 * 30.25146 * 1 2 3 26 26 H 1.09002 * 109.46863 * 150.25165 * 1 2 3 27 27 H 1.08005 * 119.97486 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.47147 * 30.02190 * 5 4 3 29 29 H 1.09005 * 109.47256 * 150.02622 * 5 4 3 30 30 H 1.09004 * 109.47514 * 60.00129 * 7 6 5 31 31 H 1.09004 * 109.46923 * 179.97438 * 7 6 5 32 32 H 1.09005 * 109.47025 * 299.99775 * 7 6 5 33 33 H 1.09004 * 109.47167 * 180.02562 * 10 8 6 34 34 H 1.09005 * 109.47621 * 300.00056 * 10 8 6 35 35 H 1.08994 * 109.47520 * 59.99897 * 10 8 6 36 36 H 0.97000 * 119.99532 * 179.97438 * 14 13 11 37 37 H 1.08008 * 119.96973 * 180.02562 * 19 4 3 38 38 H 1.08993 * 109.46896 * 269.97576 * 21 20 19 39 39 H 1.09004 * 109.46769 * 29.97959 * 21 20 19 40 40 H 1.09001 * 109.46936 * 149.97327 * 21 20 19 41 41 H 0.96700 * 114.00170 * 269.72763 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1960 0.0000 4 6 3.5810 1.1967 -0.0053 5 6 4.3326 2.5028 -0.0112 6 7 4.5710 2.9244 -1.3981 7 6 3.3076 3.2452 -2.0753 8 6 5.4999 4.0613 -1.4504 9 1 5.0782 4.9007 -0.8975 10 6 6.8360 3.6575 -0.8239 11 6 5.7192 4.4652 -2.8857 12 1 5.2188 3.9304 -3.6795 13 6 6.5584 5.5172 -3.1853 14 7 7.1673 6.1686 -2.2185 15 14 6.8308 6.0173 -4.9643 16 1 5.8221 7.0358 -5.3521 17 1 8.1935 6.5877 -5.1151 18 1 6.6932 4.8259 -5.8400 19 6 4.2752 0.0009 -0.0058 20 6 3.5886 -1.1978 -0.0004 21 6 4.3459 -2.5007 -0.0004 22 6 2.2013 -1.2011 0.0053 23 8 1.5235 -2.3790 0.0111 24 1 -0.3633 0.0046 1.0276 25 1 -0.3632 0.8877 -0.5177 26 1 -0.3633 -0.8923 -0.5099 27 1 1.6584 2.1314 0.0004 28 1 3.7447 3.2627 0.5035 29 1 5.2874 2.3749 0.4988 30 1 2.8065 4.0552 -1.5451 31 1 3.5131 3.5548 -3.1001 32 1 2.6657 2.3643 -2.0833 33 1 7.5251 4.5012 -0.8623 34 1 6.6771 3.3656 0.2143 35 1 7.2576 2.8181 -1.3767 36 1 7.7580 6.9085 -2.4294 37 1 5.3553 0.0040 -0.0096 38 1 4.5241 -2.8174 -1.0280 39 1 5.3001 -2.3663 0.5092 40 1 3.7611 -3.2608 0.5179 41 1 1.3313 -2.7179 0.8961 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289458610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:22 Heat of formation + Delta-G solvation = -23.385742 kcal Electronic energy + Delta-G solvation = -20035.342444 eV Core-core repulsion = 17108.080734 eV Total energy + Delta-G solvation = -2927.261710 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.03051 -37.54991 -36.05936 -33.50348 -32.96960 -31.19388 -29.05612 -27.61215 -26.59263 -26.23232 -24.60223 -23.20299 -20.82999 -20.56237 -19.21814 -18.18295 -16.33911 -16.13293 -15.55953 -15.20990 -14.34973 -14.12350 -13.93868 -13.64831 -13.28598 -13.17628 -12.96153 -12.84794 -12.46089 -12.37815 -12.07769 -11.99183 -11.66294 -11.29422 -11.16947 -11.03220 -10.92407 -10.64455 -10.47453 -10.27391 -10.12072 -10.00520 -9.80102 -8.87288 -8.44574 -8.41005 -8.16021 -7.15611 -6.00858 -4.05129 1.41424 1.50875 3.30939 3.37577 3.42151 3.73457 4.29372 4.42503 4.85458 4.89914 5.02215 5.24158 5.33606 5.41371 5.46143 5.57045 5.61854 5.65345 5.71862 5.80575 5.87392 5.98920 6.10936 6.21978 6.30495 6.33607 6.42872 6.57729 6.63334 6.79938 6.83504 6.94497 7.02444 7.05240 7.15784 7.51715 7.70229 7.72316 7.83531 8.20722 8.32635 8.60148 9.01406 9.59862 11.05985 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029932 B = 0.004420 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.218844 B = 6333.207376 C = 6594.885253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.110 4.110 3 C -0.107 4.107 4 C -0.057 4.057 5 C 0.084 3.916 6 N -0.530 5.530 7 C 0.035 3.965 8 C 0.211 3.789 9 H -0.002 1.002 10 C -0.134 4.134 11 C -0.502 4.502 12 H 0.063 0.937 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.092 4.092 20 C -0.109 4.109 21 C -0.104 4.104 22 C 0.086 3.914 23 O -0.494 6.494 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.121 0.879 28 H 0.030 0.970 29 H 0.084 0.916 30 H 0.009 0.991 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.008 0.992 35 H 0.035 0.965 36 H 0.260 0.740 37 H 0.126 0.874 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.433 -13.257 7.599 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.111 4.111 3 C -0.126 4.126 4 C -0.058 4.058 5 C -0.044 4.044 6 N -0.255 5.255 7 C -0.114 4.114 8 C 0.106 3.894 9 H 0.016 0.984 10 C -0.192 4.192 11 C -0.541 4.541 12 H 0.082 0.918 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.111 4.111 20 C -0.110 4.110 21 C -0.161 4.161 22 C 0.042 3.958 23 O -0.303 6.303 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.139 0.861 28 H 0.048 0.952 29 H 0.102 0.898 30 H 0.027 0.973 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.027 0.973 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.144 0.856 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -9.038 -13.418 6.750 17.530 hybrid contribution -0.204 1.036 -0.045 1.057 sum -9.243 -12.382 6.705 16.843 Atomic orbital electron populations 1.20643 0.91114 1.02947 1.01815 1.20081 0.96278 0.92496 1.02208 1.20851 0.93743 0.96922 1.01048 1.19996 0.93230 0.95631 0.96901 1.21133 0.98860 0.91719 0.92681 1.62159 1.11958 1.39932 1.11416 1.22284 0.90971 0.97506 1.00639 1.19269 0.88347 0.85187 0.96617 0.98437 1.21862 1.00546 1.01653 0.95097 1.21155 1.26856 1.14353 0.91722 0.91841 1.24925 0.95707 0.96271 0.97321 1.69896 1.30367 1.21772 1.31297 0.86524 0.77360 0.78693 0.85010 1.20808 1.21256 1.19834 1.20822 1.00006 0.90621 0.99608 1.20139 0.92897 0.96017 1.01922 1.20611 0.99229 0.93864 1.02405 1.18013 0.89151 0.84560 1.04124 1.84814 1.76512 1.36321 1.32670 0.91753 0.91619 0.91180 0.86135 0.95218 0.89823 0.97271 0.90508 0.93504 0.89621 0.97283 0.94615 0.93007 0.85588 0.91206 0.91712 0.91912 0.76592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.79 36.01 0.35 -0.81 16 2 C -0.11 -1.49 5.89 -104.47 -0.62 -2.11 16 3 C -0.11 -1.59 7.61 -39.61 -0.30 -1.89 16 4 C -0.06 -0.93 4.88 -104.60 -0.51 -1.44 16 5 C 0.08 1.55 4.93 -4.98 -0.02 1.53 16 6 N -0.53 -11.60 4.61 -237.73 -1.10 -12.69 16 7 C 0.03 0.70 8.86 60.06 0.53 1.24 16 8 C 0.21 5.36 2.06 -68.86 -0.14 5.22 16 9 H 0.00 -0.05 8.14 -51.93 -0.42 -0.48 16 10 C -0.13 -3.25 8.76 37.15 0.33 -2.92 16 11 C -0.50 -13.81 7.88 -34.44 -0.27 -14.08 16 12 H 0.06 1.75 6.40 -52.48 -0.34 1.42 16 13 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 14 N -0.89 -25.46 11.32 55.43 0.63 -24.84 16 15 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 19 C -0.09 -1.41 9.35 -39.61 -0.37 -1.78 16 20 C -0.11 -1.50 5.89 -104.47 -0.62 -2.12 16 21 C -0.10 -1.15 9.79 36.01 0.35 -0.80 16 22 C 0.09 1.16 6.65 -39.21 -0.26 0.89 16 23 O -0.49 -5.55 11.60 -19.41 -0.23 -5.78 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 26 H 0.07 0.74 7.53 -51.93 -0.39 0.35 16 27 H 0.12 1.70 8.03 -52.48 -0.42 1.28 16 28 H 0.03 0.54 8.06 -51.93 -0.42 0.13 16 29 H 0.08 1.54 5.77 -51.93 -0.30 1.24 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 1.68 6.10 -51.93 -0.32 1.36 16 32 H 0.05 0.86 6.16 -51.93 -0.32 0.54 16 33 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 34 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 35 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.13 1.88 8.06 -52.48 -0.42 1.45 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.06 0.59 7.53 -51.93 -0.39 0.20 16 41 H 0.38 2.49 9.06 45.56 0.41 2.90 16 LS Contribution 326.23 15.07 4.92 4.92 Total: -1.00 -30.10 326.23 -8.07 -38.18 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.63 Total: 1.37 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -1.64 Total: -17.54 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.47 Total: -37.53 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.23 Total: -5.78 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.10 -8.07 -38.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289458610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.793 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds