Wall clock time and date at job start Mon Mar 30 2020 06:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38140 * 120.02988 * 2 1 4 4 C 1.38264 * 120.05823 * 180.25603 * 3 2 1 5 5 C 1.50698 * 119.94803 * 179.74264 * 4 3 2 6 6 N 1.46902 * 109.47187 * 270.02407 * 5 4 3 7 7 C 1.46892 * 111.00067 * 66.04684 * 6 5 4 8 8 C 1.46910 * 110.99852 * 190.00145 * 6 5 4 9 9 H 1.09004 * 109.46470 * 299.99569 * 8 6 5 10 10 C 1.52990 * 109.47150 * 59.99868 * 8 6 5 11 11 C 1.50701 * 109.47030 * 180.02562 * 8 6 5 12 12 H 1.08004 * 119.99470 * 359.97438 * 11 8 6 13 13 C 1.37869 * 120.00048 * 179.97438 * 11 8 6 14 14 N 1.31521 * 119.99950 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99998 * 179.97438 * 13 11 8 16 16 H 1.48496 * 109.47110 * 89.99964 * 15 13 11 17 17 H 1.48501 * 109.47023 * 209.99921 * 15 13 11 18 18 H 1.48495 * 109.47111 * 329.99480 * 15 13 11 19 19 C 1.38269 * 120.10764 * 359.76658 * 4 3 2 20 20 C 1.38137 * 120.06013 * 359.97438 * 19 4 3 21 21 C 1.50702 * 120.03224 * 180.02562 * 20 19 4 22 22 C 1.38734 * 120.02664 * 179.74571 * 2 1 3 23 23 O 1.35896 * 120.05666 * 359.97438 * 22 2 1 24 24 H 1.08998 * 109.47130 * 270.25473 * 1 2 3 25 25 H 1.08997 * 109.46616 * 30.25146 * 1 2 3 26 26 H 1.09002 * 109.46863 * 150.25165 * 1 2 3 27 27 H 1.08005 * 119.97486 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.47147 * 30.02190 * 5 4 3 29 29 H 1.09005 * 109.47256 * 150.02622 * 5 4 3 30 30 H 1.09004 * 109.47514 * 60.00129 * 7 6 5 31 31 H 1.09004 * 109.46923 * 179.97438 * 7 6 5 32 32 H 1.09005 * 109.47025 * 299.99775 * 7 6 5 33 33 H 1.09004 * 109.47167 * 180.02562 * 10 8 6 34 34 H 1.09005 * 109.47621 * 300.00056 * 10 8 6 35 35 H 1.08994 * 109.47520 * 59.99897 * 10 8 6 36 36 H 0.97000 * 119.99532 * 179.97438 * 14 13 11 37 37 H 1.08008 * 119.96973 * 180.02562 * 19 4 3 38 38 H 1.08993 * 109.46896 * 269.97576 * 21 20 19 39 39 H 1.09004 * 109.46769 * 29.97959 * 21 20 19 40 40 H 1.09001 * 109.46936 * 149.97327 * 21 20 19 41 41 H 0.96700 * 114.00170 * 269.72763 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1960 0.0000 4 6 3.5810 1.1967 -0.0053 5 6 4.3326 2.5028 -0.0112 6 7 4.5710 2.9244 -1.3981 7 6 3.3076 3.2452 -2.0753 8 6 5.4999 4.0613 -1.4504 9 1 5.0782 4.9007 -0.8975 10 6 6.8360 3.6575 -0.8239 11 6 5.7192 4.4652 -2.8857 12 1 5.2188 3.9304 -3.6795 13 6 6.5584 5.5172 -3.1853 14 7 7.1673 6.1686 -2.2185 15 14 6.8308 6.0173 -4.9643 16 1 5.8221 7.0358 -5.3521 17 1 8.1935 6.5877 -5.1151 18 1 6.6932 4.8259 -5.8400 19 6 4.2752 0.0009 -0.0058 20 6 3.5886 -1.1978 -0.0004 21 6 4.3459 -2.5007 -0.0004 22 6 2.2013 -1.2011 0.0053 23 8 1.5235 -2.3790 0.0111 24 1 -0.3633 0.0046 1.0276 25 1 -0.3632 0.8877 -0.5177 26 1 -0.3633 -0.8923 -0.5099 27 1 1.6584 2.1314 0.0004 28 1 3.7447 3.2627 0.5035 29 1 5.2874 2.3749 0.4988 30 1 2.8065 4.0552 -1.5451 31 1 3.5131 3.5548 -3.1001 32 1 2.6657 2.3643 -2.0833 33 1 7.5251 4.5012 -0.8623 34 1 6.6771 3.3656 0.2143 35 1 7.2576 2.8181 -1.3767 36 1 7.7580 6.9085 -2.4294 37 1 5.3553 0.0040 -0.0096 38 1 4.5241 -2.8174 -1.0280 39 1 5.3001 -2.3663 0.5092 40 1 3.7611 -3.2608 0.5179 41 1 1.3313 -2.7179 0.8961 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289458610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:21 Heat of formation + Delta-G solvation = -42.501248 kcal Electronic energy + Delta-G solvation = -20036.171355 eV Core-core repulsion = 17108.080734 eV Total energy + Delta-G solvation = -2928.090621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.10526 -39.01074 -37.33979 -34.87546 -34.47378 -32.56341 -30.90436 -28.86951 -27.70182 -27.52653 -26.46764 -24.84499 -22.03140 -21.84384 -20.86842 -19.15848 -18.36340 -17.35858 -16.97719 -16.56190 -15.87759 -15.72408 -15.60677 -14.79247 -14.61725 -14.25440 -14.07410 -13.99869 -13.86762 -13.71535 -13.40405 -13.12158 -12.95924 -12.81936 -12.78609 -12.68244 -12.42226 -12.23891 -12.14108 -12.03611 -11.93900 -11.53592 -11.24592 -10.88171 -10.52622 -9.48085 -9.31294 -8.91776 -8.11544 -6.23278 0.31339 0.42181 1.41598 1.42874 1.53597 2.41662 2.63499 3.16787 3.35994 3.53304 3.84511 3.89835 3.93719 4.33312 4.37406 4.52179 4.54357 4.68346 4.69233 4.70950 4.72782 4.81526 4.83318 4.90845 4.96303 5.01784 5.02679 5.06928 5.23962 5.25360 5.37999 5.48300 5.52130 5.57915 5.71838 5.74644 5.79207 5.98871 6.25370 6.38246 6.71363 6.90812 6.92099 7.45775 8.94365 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029932 B = 0.004420 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.218844 B = 6333.207376 C = 6594.885253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.114 4.114 3 C -0.115 4.115 4 C -0.076 4.076 5 C 0.090 3.910 6 N -0.538 5.538 7 C 0.042 3.958 8 C 0.216 3.784 9 H -0.036 1.036 10 C -0.121 4.121 11 C -0.520 4.520 12 H 0.057 0.943 13 C 0.013 3.987 14 N -0.920 5.920 15 Si 0.959 3.041 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.270 1.270 19 C -0.105 4.105 20 C -0.115 4.115 21 C -0.103 4.103 22 C 0.091 3.909 23 O -0.496 6.496 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.124 0.876 28 H 0.028 0.972 29 H 0.080 0.920 30 H 0.009 0.991 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.032 0.968 35 H 0.031 0.969 36 H 0.262 0.738 37 H 0.123 0.877 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.621 -14.991 7.550 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.114 4.114 3 C -0.133 4.133 4 C -0.076 4.076 5 C -0.038 4.038 6 N -0.262 5.262 7 C -0.106 4.106 8 C 0.109 3.891 9 H -0.019 1.019 10 C -0.179 4.179 11 C -0.558 4.558 12 H 0.076 0.924 13 C -0.186 4.186 14 N -0.560 5.560 15 Si 0.785 3.215 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.195 1.195 19 C -0.124 4.124 20 C -0.115 4.115 21 C -0.160 4.160 22 C 0.046 3.954 23 O -0.308 6.308 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.141 0.859 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.027 0.973 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.141 0.859 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -10.245 -15.176 6.724 19.506 hybrid contribution 0.084 1.470 0.040 1.473 sum -10.161 -13.706 6.764 18.353 Atomic orbital electron populations 1.20678 0.89021 1.03285 1.03180 1.20381 0.97836 0.91996 1.01228 1.20910 0.93189 0.97821 1.01403 1.19803 0.93836 0.94607 0.99402 1.21077 0.99127 0.93030 0.90556 1.62091 1.12291 1.38020 1.13807 1.22204 0.90685 0.98401 0.99334 1.19073 0.89401 0.85351 0.95271 1.01880 1.21670 0.99430 1.00315 0.96517 1.21413 1.27013 1.14710 0.92647 0.92442 1.25688 0.95423 0.96237 1.01256 1.70018 1.30732 1.22082 1.33124 0.85535 0.77385 0.78350 0.80238 1.20175 1.20749 1.19496 1.20885 1.00057 0.91076 1.00337 1.20410 0.93471 0.96465 1.01188 1.20658 0.99727 0.92928 1.02637 1.18106 0.89164 0.85295 1.02793 1.84754 1.76041 1.35259 1.34766 0.89801 0.91338 0.90760 0.85850 0.95389 0.90193 0.97257 0.92340 0.91403 0.92057 0.94897 0.94975 0.92905 0.85882 0.91439 0.90852 0.89993 0.73831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 9.79 71.24 0.70 -1.25 16 2 C -0.11 -2.83 5.89 -19.77 -0.12 -2.94 16 3 C -0.11 -3.27 7.61 22.25 0.17 -3.10 16 4 C -0.08 -2.44 4.88 -19.85 -0.10 -2.54 16 5 C 0.09 3.34 4.93 85.56 0.42 3.76 16 6 N -0.54 -23.84 4.61 -906.03 -4.18 -28.02 16 7 C 0.04 1.73 8.86 127.69 1.13 2.86 16 8 C 0.22 11.22 2.06 44.16 0.09 11.31 16 9 H -0.04 -2.09 8.14 -2.38 -0.02 -2.11 16 10 C -0.12 -6.01 8.76 71.98 0.63 -5.38 16 11 C -0.52 -29.08 7.88 25.60 0.20 -28.88 16 12 H 0.06 3.22 6.40 -2.91 -0.02 3.20 16 13 C 0.01 0.70 5.30 84.65 0.45 1.15 16 14 N -0.92 -53.28 11.32 21.45 0.24 -53.03 16 15 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 C -0.10 -3.14 9.35 22.25 0.21 -2.93 16 20 C -0.11 -2.95 5.89 -19.77 -0.12 -3.06 16 21 C -0.10 -2.03 9.79 71.24 0.70 -1.33 16 22 C 0.09 2.22 6.65 22.51 0.15 2.37 16 23 O -0.50 -9.43 11.60 -92.38 -1.07 -10.50 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.24 8.09 -2.39 -0.02 1.22 16 26 H 0.07 1.33 7.53 -2.39 -0.02 1.31 16 27 H 0.12 3.36 8.03 -2.91 -0.02 3.34 16 28 H 0.03 1.04 8.06 -2.39 -0.02 1.02 16 29 H 0.08 2.98 5.77 -2.38 -0.01 2.96 16 30 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 2.59 6.10 -2.39 -0.01 2.57 16 32 H 0.07 2.47 6.16 -2.38 -0.01 2.46 16 33 H 0.06 3.34 6.07 -2.38 -0.01 3.32 16 34 H 0.03 1.42 6.20 -2.38 -0.01 1.40 16 35 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.26 14.40 8.31 -92.71 -0.77 13.62 16 37 H 0.12 3.64 8.06 -2.91 -0.02 3.62 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.31 8.09 -2.38 -0.02 1.29 16 40 H 0.08 1.28 7.53 -2.39 -0.02 1.26 16 41 H 0.40 3.71 9.06 -74.06 -0.67 3.04 16 Total: -1.00 -64.38 326.23 1.88 -62.49 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.35 Total: 12.84 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 4.52 Total: -29.96 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -3.94 Total: -81.05 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -1.07 Total: -10.50 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -64.38 1.88 -62.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289458610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.993 kcal (2) G-P(sol) polarization free energy of solvation -64.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds