Wall clock time and date at job start Mon Mar 30 2020 06:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38145 * 120.02657 * 2 1 4 4 C 1.38269 * 120.05203 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.94088 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47041 * 90.00011 * 5 4 3 7 7 C 1.46906 * 110.99888 * 179.97438 * 6 5 4 8 8 C 1.52993 * 109.47378 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47473 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47239 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99960 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99798 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00253 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99629 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47142 * 60.00574 * 14 12 10 16 16 H 1.48506 * 109.47042 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47444 * 300.00415 * 14 12 10 18 18 C 1.38265 * 120.11226 * 0.29869 * 4 3 2 19 19 C 1.38140 * 120.05566 * 359.44872 * 18 4 3 20 20 C 1.50698 * 120.02940 * 180.24967 * 19 18 4 21 21 C 1.38732 * 120.02768 * 180.02562 * 2 1 3 22 22 O 1.35902 * 120.05500 * 0.02562 * 21 2 1 23 23 H 1.09004 * 109.47383 * 89.99678 * 1 2 3 24 24 H 1.08996 * 109.47148 * 209.99832 * 1 2 3 25 25 H 1.09003 * 109.47222 * 330.00131 * 1 2 3 26 26 H 1.08002 * 119.97327 * 0.02562 * 3 2 1 27 27 H 1.08997 * 109.46924 * 329.99922 * 5 4 3 28 28 H 1.08995 * 109.46962 * 210.00076 * 5 4 3 29 29 H 1.00901 * 111.00121 * 56.04537 * 6 5 4 30 30 H 1.09004 * 109.47040 * 299.99934 * 7 6 5 31 31 H 1.09000 * 109.47033 * 59.99886 * 7 6 5 32 32 H 1.09004 * 109.46862 * 299.99897 * 8 7 6 33 33 H 1.09004 * 109.46998 * 59.99419 * 8 7 6 34 34 H 1.08996 * 109.47261 * 300.00171 * 9 8 7 35 35 H 1.09000 * 109.46870 * 59.99782 * 9 8 7 36 36 H 0.97001 * 120.00663 * 179.97438 * 13 12 10 37 37 H 1.08004 * 119.96897 * 179.70507 * 18 4 3 38 38 H 1.08998 * 109.47380 * 270.28206 * 20 19 18 39 39 H 1.09006 * 109.46994 * 30.27560 * 20 19 18 40 40 H 1.09000 * 109.46947 * 150.27627 * 20 19 18 41 41 H 0.96695 * 113.99963 * 89.99629 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1961 0.0000 4 6 3.5810 1.1967 -0.0005 5 6 4.3326 2.5029 0.0001 6 7 4.5773 2.9264 1.3852 7 6 5.3102 4.1989 1.4250 8 6 5.5464 4.6062 2.8806 9 6 6.3103 5.9312 2.9221 10 6 6.5424 6.3326 4.3559 11 1 6.1815 5.7052 5.1576 12 6 7.2164 7.5004 4.6444 13 7 7.6562 8.2641 3.6684 14 14 7.5046 7.9976 6.4218 15 1 8.2987 6.9465 7.1073 16 1 8.2460 9.2838 6.4620 17 1 6.1982 8.1582 7.1091 18 6 4.2752 0.0009 -0.0073 19 6 3.5886 -1.1977 -0.0021 20 6 4.3458 -2.5006 -0.0038 21 6 2.2012 -1.2011 -0.0005 22 8 1.5234 -2.3790 -0.0016 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6583 2.1314 0.0004 27 1 3.7422 3.2620 -0.5130 28 1 5.2849 2.3743 -0.5142 29 1 5.0675 2.2109 1.9009 30 1 6.2695 4.0816 0.9207 31 1 4.7270 4.9700 0.9216 32 1 4.5874 4.7234 3.3853 33 1 6.1298 3.8349 3.3836 34 1 7.2693 5.8136 2.4175 35 1 5.7273 6.7026 2.4190 36 1 8.1301 9.0858 3.8713 37 1 5.3552 0.0041 -0.0125 38 1 4.5277 -2.8139 -1.0318 39 1 5.2983 -2.3679 0.5095 40 1 3.7593 -3.2624 0.5099 41 1 1.3276 -2.7193 -0.8852 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290482527.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:16 Heat of formation + Delta-G solvation = -49.651882 kcal Electronic energy + Delta-G solvation = -18725.440255 eV Core-core repulsion = 15797.039560 eV Total energy + Delta-G solvation = -2928.400695 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.29257 -37.47432 -35.97432 -33.76847 -33.62316 -32.03007 -30.37563 -27.64888 -26.86866 -26.38844 -24.44340 -22.19852 -21.15105 -20.86770 -19.95856 -18.43459 -16.60373 -16.27897 -15.90101 -15.38422 -14.79708 -14.58952 -14.23573 -14.03615 -13.62458 -13.42967 -13.35489 -13.16764 -12.97867 -12.60110 -12.24654 -12.19048 -11.96872 -11.72132 -11.44294 -11.32521 -11.14300 -10.79659 -10.56294 -10.54815 -10.50094 -9.67077 -9.33657 -9.05541 -8.74005 -8.55781 -8.31866 -8.14076 -5.97216 -3.99261 1.06489 1.19070 3.35782 3.38374 3.39606 3.42779 4.03714 4.45593 4.53573 4.58727 4.60831 4.80284 5.11888 5.17488 5.27456 5.35028 5.36982 5.38497 5.39734 5.46012 5.61612 5.64120 5.69652 5.82153 5.91756 5.92684 6.06598 6.24774 6.33211 6.33966 6.52448 6.69086 6.73892 6.77803 7.15915 7.32698 7.44943 7.61968 7.70967 7.86138 8.03261 8.46712 9.07787 9.64565 11.14256 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.034245 B = 0.002763 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.430970 B =10132.732937 C =10271.655520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.109 4.109 3 C -0.089 4.089 4 C -0.075 4.075 5 C 0.096 3.904 6 N -0.686 5.686 7 C 0.058 3.942 8 C -0.107 4.107 9 C 0.023 3.977 10 C -0.520 4.520 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.107 4.107 19 C -0.108 4.108 20 C -0.111 4.111 21 C 0.095 3.905 22 O -0.494 6.494 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.128 0.872 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.339 0.661 30 H 0.025 0.975 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.013 0.987 35 H 0.016 0.984 36 H 0.261 0.739 37 H 0.123 0.877 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.005 -20.475 -12.352 26.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.109 4.109 3 C -0.108 4.108 4 C -0.076 4.076 5 C -0.033 4.033 6 N -0.316 5.316 7 C -0.070 4.070 8 C -0.145 4.145 9 C -0.015 4.015 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.126 4.126 19 C -0.109 4.109 20 C -0.168 4.168 21 C 0.051 3.949 22 O -0.303 6.303 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.145 0.855 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.156 0.844 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.141 0.859 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -11.487 -19.937 -11.706 25.816 hybrid contribution 1.126 0.060 0.188 1.143 sum -10.361 -19.876 -11.518 25.201 Atomic orbital electron populations 1.20678 0.90755 1.03281 1.02069 1.20196 0.96646 0.92485 1.01592 1.20839 0.93446 0.97216 0.99292 1.19865 0.93862 0.94651 0.99184 1.20883 0.97879 0.93201 0.91338 1.60614 1.53386 1.06198 1.11449 1.22160 0.95031 0.90061 0.99723 1.21627 1.00602 0.99744 0.92544 1.19058 0.94836 0.90644 0.96961 1.21233 1.35718 1.06314 0.92523 0.92709 1.25028 0.95773 0.96556 0.97152 1.69952 1.38620 1.13738 1.31371 0.86652 0.78344 0.77702 0.85268 1.20263 1.21316 1.20209 1.20844 0.99693 0.91058 1.00966 1.20132 0.93011 0.95998 1.01751 1.20673 0.99777 0.94240 1.02068 1.18063 0.89137 0.84752 1.02987 1.84781 1.76413 1.36118 1.33028 0.91512 0.91014 0.91296 0.85453 0.90229 0.94568 0.84382 0.95699 0.91381 0.92520 0.93657 0.96820 0.96575 0.92984 0.85912 0.91523 0.91446 0.90971 0.76127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.79 36.01 0.35 -0.59 16 2 C -0.11 -1.17 5.89 -104.47 -0.62 -1.79 16 3 C -0.09 -1.03 9.35 -39.60 -0.37 -1.40 16 4 C -0.08 -0.90 5.39 -104.60 -0.56 -1.46 16 5 C 0.10 1.21 5.81 -4.97 -0.03 1.18 16 6 N -0.69 -10.35 6.49 -115.06 -0.75 -11.10 16 7 C 0.06 1.03 5.68 -3.82 -0.02 1.00 16 8 C -0.11 -2.27 5.41 -26.74 -0.14 -2.42 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 11 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 14 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C -0.11 -1.19 9.35 -39.61 -0.37 -1.56 16 19 C -0.11 -1.15 5.89 -104.48 -0.62 -1.76 16 20 C -0.11 -0.91 9.79 36.00 0.35 -0.56 16 21 C 0.10 1.02 6.65 -39.22 -0.26 0.76 16 22 O -0.49 -4.41 11.60 -19.43 -0.23 -4.63 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.61 7.53 -51.93 -0.39 0.22 16 25 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 26 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 27 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 28 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 29 H 0.34 4.94 8.72 -39.29 -0.34 4.60 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 40 H 0.07 0.60 7.53 -51.93 -0.39 0.21 16 41 H 0.38 1.67 9.06 45.56 0.41 2.09 16 LS Contribution 343.29 15.07 5.17 5.17 Total: -1.00 -32.18 343.29 -9.08 -41.26 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.16 Total: 0.94 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -2.84 Total: -21.99 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.01 Total: -37.74 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.23 Total: -4.63 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.18 -9.08 -41.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290482527.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.394 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds