Wall clock time and date at job start Mon Mar 30 2020 06:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38257 * 120.00196 * 2 1 4 4 C 1.38206 * 120.00014 * 180.22975 * 3 2 1 5 5 C 1.38257 * 120.00202 * 359.81253 * 4 3 2 6 6 C 1.38210 * 119.99796 * 359.97438 * 5 4 3 7 7 C 1.38214 * 120.00100 * 179.78908 * 2 1 3 8 8 C 1.50701 * 119.99759 * 0.02562 * 7 2 1 9 9 N 1.46904 * 109.47310 * 285.12261 * 8 7 2 10 10 C 1.46895 * 111.00268 * 288.20570 * 9 8 7 11 11 C 1.46892 * 111.00336 * 164.24532 * 9 8 7 12 12 C 1.53001 * 109.47510 * 190.00383 * 11 9 8 13 13 O 1.42902 * 109.46884 * 65.00011 * 12 11 9 14 14 C 1.42903 * 113.99739 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.46777 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00419 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99708 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00317 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00011 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47107 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.46928 * 120.00374 * 19 17 15 22 22 H 1.48497 * 109.47637 * 240.00303 * 19 17 15 23 23 H 1.08997 * 109.47393 * 264.72508 * 1 2 3 24 24 H 1.09002 * 109.47088 * 24.72727 * 1 2 3 25 25 H 1.08999 * 109.46989 * 144.72519 * 1 2 3 26 26 H 1.08004 * 119.99504 * 0.06870 * 3 2 1 27 27 H 1.08001 * 119.99527 * 179.83807 * 4 3 2 28 28 H 1.07997 * 120.00229 * 180.02562 * 5 4 3 29 29 H 1.08009 * 120.00060 * 180.02562 * 6 5 4 30 30 H 1.08997 * 109.47560 * 45.12863 * 8 7 2 31 31 H 1.09003 * 109.47358 * 165.12674 * 8 7 2 32 32 H 1.09003 * 109.47141 * 52.48398 * 10 9 8 33 33 H 1.09002 * 109.47164 * 172.48404 * 10 9 8 34 34 H 1.09001 * 109.47196 * 292.48645 * 10 9 8 35 35 H 1.09004 * 109.47185 * 310.00414 * 11 9 8 36 36 H 1.09007 * 109.47219 * 70.00292 * 11 9 8 37 37 H 1.09001 * 109.47000 * 184.99985 * 12 11 9 38 38 H 1.08996 * 109.46949 * 304.99975 * 12 11 9 39 39 H 1.09001 * 109.47444 * 300.00106 * 14 13 12 40 40 H 1.09001 * 109.46922 * 60.00475 * 14 13 12 41 41 H 0.96996 * 120.00105 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2717 -0.0001 -0.0057 6 6 3.5806 -1.1970 -0.0012 7 6 2.1981 -1.1970 0.0044 8 6 1.4446 -2.5020 0.0086 9 7 0.8863 -2.7408 1.3463 10 6 1.9448 -3.0852 2.3048 11 6 -0.1477 -3.7835 1.3068 12 6 -0.8758 -3.8310 2.6516 13 8 -1.5823 -2.6055 2.8543 14 6 -2.3009 -2.5461 4.0881 15 6 -3.0037 -1.2176 4.1965 16 1 -2.9114 -0.4914 3.4025 17 6 -3.7657 -0.9295 5.3090 18 7 -3.8787 -1.8140 6.2757 19 14 -4.6364 0.7176 5.4437 20 1 -4.3511 1.5289 4.2332 21 1 -6.1005 0.4958 5.5567 22 1 -4.1505 1.4374 6.6483 23 1 -0.3634 -0.0945 1.0233 24 1 -0.3633 0.9335 -0.4299 25 1 -0.3633 -0.8390 -0.5935 26 1 1.6583 2.1326 0.0011 27 1 4.1203 2.1326 -0.0074 28 1 5.3517 -0.0001 -0.0090 29 1 4.1206 -2.1324 -0.0015 30 1 0.6353 -2.4568 -0.7201 31 1 2.1231 -3.3143 -0.2521 32 1 2.7283 -2.3282 2.2683 33 1 1.5255 -3.1259 3.3101 34 1 2.3662 -4.0569 2.0473 35 1 -0.8617 -3.5573 0.5149 36 1 0.3178 -4.7496 1.1113 37 1 -1.5814 -4.6618 2.6536 38 1 -0.1500 -3.9689 3.4530 39 1 -3.0361 -3.3502 4.1195 40 1 -1.6049 -2.6575 4.9196 41 1 -4.4144 -1.6112 7.0584 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293466601.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:40 Heat of formation + Delta-G solvation = -24.510597 kcal Electronic energy + Delta-G solvation = -19826.414443 eV Core-core repulsion = 16899.103956 eV Total energy + Delta-G solvation = -2927.310487 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.62288 -37.56659 -35.91432 -32.82160 -32.56135 -31.61160 -29.09105 -27.28204 -26.89238 -26.38858 -23.85375 -22.23411 -21.88273 -20.83679 -20.15565 -16.43359 -16.22643 -15.96689 -15.86807 -15.39651 -15.03644 -14.48189 -14.16186 -13.98473 -13.88649 -13.21186 -13.02766 -12.86921 -12.61500 -12.09452 -12.01648 -11.84440 -11.75922 -11.63443 -11.41378 -11.12077 -10.87319 -10.80798 -10.73942 -10.58077 -10.33563 -9.93581 -9.01755 -8.76242 -8.72219 -8.43918 -8.09082 -8.00630 -6.05762 -4.06328 1.43028 1.50841 3.32394 3.38816 3.45534 3.76584 4.28098 4.40122 4.83027 4.90092 4.93967 5.07033 5.12683 5.25578 5.31009 5.39314 5.48203 5.55050 5.57186 5.68662 5.78492 5.80794 5.85776 5.98551 6.04637 6.10579 6.15530 6.17595 6.23399 6.35579 6.53909 6.58170 6.64384 6.84687 7.12115 7.16831 7.28428 7.30512 7.50190 7.86409 8.22985 8.68399 9.08845 9.58438 11.06065 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019299 B = 0.004826 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.524266 B = 5800.575672 C = 6753.467840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.048 4.048 3 C -0.126 4.126 4 C -0.119 4.119 5 C -0.135 4.135 6 C -0.113 4.113 7 C -0.079 4.079 8 C 0.094 3.906 9 N -0.519 5.519 10 C 0.025 3.975 11 C 0.061 3.939 12 C 0.067 3.933 13 O -0.379 6.379 14 C 0.194 3.806 15 C -0.507 4.507 16 H 0.067 0.933 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.905 3.095 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.093 0.907 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.018 0.982 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.001 0.999 40 H 0.002 0.998 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.203 -0.492 -13.381 19.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.049 4.049 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.153 4.153 6 C -0.132 4.132 7 C -0.080 4.080 8 C -0.033 4.033 9 N -0.243 5.243 10 C -0.123 4.123 11 C -0.066 4.066 12 C -0.011 4.011 13 O -0.298 6.298 14 C 0.120 3.880 15 C -0.546 4.546 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.733 3.267 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.112 0.888 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.037 0.963 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.875 0.056 -13.180 19.137 hybrid contribution 0.000 -0.204 0.305 0.367 sum 13.875 -0.148 -12.875 18.929 Atomic orbital electron populations 1.20819 0.90317 1.01340 1.04434 1.19860 0.96689 0.92115 0.96210 1.21074 0.94170 0.97681 1.01505 1.21073 0.94378 0.97793 1.00503 1.20991 0.99395 0.92609 1.02354 1.20987 0.93608 0.97828 1.00733 1.19615 0.93044 0.94629 1.00699 1.21025 0.97499 0.93144 0.91676 1.61821 1.12122 1.44227 1.06092 1.22429 0.94222 0.98268 0.97425 1.22185 0.93696 0.91852 0.98916 1.22240 0.94437 0.89291 0.95161 1.87935 1.65922 1.33815 1.42136 1.20168 0.89981 0.97302 0.80597 1.21093 1.28588 1.00556 1.04335 0.91483 1.24942 0.96628 0.97643 0.95357 1.69976 1.40742 1.34795 1.08521 0.86321 0.79042 0.83243 0.78139 1.19450 1.20938 1.20917 0.88817 0.92697 0.91727 0.86223 0.86544 0.86618 0.86726 0.89896 0.94633 0.91574 0.90830 0.96343 0.90186 0.94478 0.94429 0.94589 0.98094 0.98016 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 9.40 36.01 0.34 -1.28 16 2 C -0.05 -0.67 5.88 -104.62 -0.62 -1.29 16 3 C -0.13 -1.62 9.68 -39.59 -0.38 -2.00 16 4 C -0.12 -1.37 10.05 -39.59 -0.40 -1.77 16 5 C -0.14 -1.51 10.05 -39.58 -0.40 -1.91 16 6 C -0.11 -1.33 9.00 -39.59 -0.36 -1.69 16 7 C -0.08 -1.05 4.66 -104.63 -0.49 -1.54 16 8 C 0.09 1.19 4.43 -4.97 -0.02 1.17 16 9 N -0.52 -7.83 4.53 -244.37 -1.11 -8.94 16 10 C 0.02 0.35 9.12 60.06 0.55 0.89 16 11 C 0.06 0.91 5.34 -3.83 -0.02 0.89 16 12 C 0.07 1.25 5.99 37.16 0.22 1.47 16 13 O -0.38 -9.17 10.27 -35.23 -0.36 -9.53 16 14 C 0.19 5.39 5.69 36.00 0.20 5.60 16 15 C -0.51 -15.09 9.43 -34.44 -0.32 -15.41 16 16 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 17 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 19 Si 0.91 22.10 29.54 -169.99 -5.02 17.08 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 24 H 0.05 0.70 8.05 -51.93 -0.42 0.28 16 25 H 0.06 0.88 6.46 -51.93 -0.34 0.55 16 26 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 27 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.11 1.15 8.00 -52.48 -0.42 0.73 16 30 H 0.08 1.01 6.40 -51.93 -0.33 0.68 16 31 H 0.04 0.40 7.86 -51.93 -0.41 -0.01 16 32 H 0.07 0.91 6.77 -51.93 -0.35 0.56 16 33 H 0.07 1.15 6.54 -51.93 -0.34 0.81 16 34 H 0.02 0.22 8.10 -51.93 -0.42 -0.20 16 35 H 0.08 1.18 7.86 -51.93 -0.41 0.77 16 36 H 0.04 0.47 8.09 -51.92 -0.42 0.05 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.04 0.66 6.41 -51.93 -0.33 0.33 16 39 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 40 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 336.54 15.07 5.07 5.07 Total: -1.00 -31.79 336.54 -9.16 -40.95 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -6.69 Total: -2.74 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -1.79 Total: -15.35 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.37 Total: -35.48 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.36 Total: -9.53 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.79 -9.16 -40.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293466601.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.443 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds