Wall clock time and date at job start Mon Mar 30 2020 06:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38257 * 120.00196 * 2 1 4 4 C 1.38206 * 120.00014 * 180.22975 * 3 2 1 5 5 C 1.38257 * 120.00202 * 359.81253 * 4 3 2 6 6 C 1.38210 * 119.99796 * 359.97438 * 5 4 3 7 7 C 1.38214 * 120.00100 * 179.78908 * 2 1 3 8 8 C 1.50701 * 119.99759 * 0.02562 * 7 2 1 9 9 N 1.46904 * 109.47310 * 285.12261 * 8 7 2 10 10 C 1.46895 * 111.00268 * 288.20570 * 9 8 7 11 11 C 1.46892 * 111.00336 * 164.24532 * 9 8 7 12 12 C 1.53001 * 109.47510 * 190.00383 * 11 9 8 13 13 O 1.42902 * 109.46884 * 65.00011 * 12 11 9 14 14 C 1.42903 * 113.99739 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.46777 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00419 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99708 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00317 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00011 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47107 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.46928 * 120.00374 * 19 17 15 22 22 H 1.48497 * 109.47637 * 240.00303 * 19 17 15 23 23 H 1.08997 * 109.47393 * 264.72508 * 1 2 3 24 24 H 1.09002 * 109.47088 * 24.72727 * 1 2 3 25 25 H 1.08999 * 109.46989 * 144.72519 * 1 2 3 26 26 H 1.08004 * 119.99504 * 0.06870 * 3 2 1 27 27 H 1.08001 * 119.99527 * 179.83807 * 4 3 2 28 28 H 1.07997 * 120.00229 * 180.02562 * 5 4 3 29 29 H 1.08009 * 120.00060 * 180.02562 * 6 5 4 30 30 H 1.08997 * 109.47560 * 45.12863 * 8 7 2 31 31 H 1.09003 * 109.47358 * 165.12674 * 8 7 2 32 32 H 1.09003 * 109.47141 * 52.48398 * 10 9 8 33 33 H 1.09002 * 109.47164 * 172.48404 * 10 9 8 34 34 H 1.09001 * 109.47196 * 292.48645 * 10 9 8 35 35 H 1.09004 * 109.47185 * 310.00414 * 11 9 8 36 36 H 1.09007 * 109.47219 * 70.00292 * 11 9 8 37 37 H 1.09001 * 109.47000 * 184.99985 * 12 11 9 38 38 H 1.08996 * 109.46949 * 304.99975 * 12 11 9 39 39 H 1.09001 * 109.47444 * 300.00106 * 14 13 12 40 40 H 1.09001 * 109.46922 * 60.00475 * 14 13 12 41 41 H 0.96996 * 120.00105 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2717 -0.0001 -0.0057 6 6 3.5806 -1.1970 -0.0012 7 6 2.1981 -1.1970 0.0044 8 6 1.4446 -2.5020 0.0086 9 7 0.8863 -2.7408 1.3463 10 6 1.9448 -3.0852 2.3048 11 6 -0.1477 -3.7835 1.3068 12 6 -0.8758 -3.8310 2.6516 13 8 -1.5823 -2.6055 2.8543 14 6 -2.3009 -2.5461 4.0881 15 6 -3.0037 -1.2176 4.1965 16 1 -2.9114 -0.4914 3.4025 17 6 -3.7657 -0.9295 5.3090 18 7 -3.8787 -1.8140 6.2757 19 14 -4.6364 0.7176 5.4437 20 1 -4.3511 1.5289 4.2332 21 1 -6.1005 0.4958 5.5567 22 1 -4.1505 1.4374 6.6483 23 1 -0.3634 -0.0945 1.0233 24 1 -0.3633 0.9335 -0.4299 25 1 -0.3633 -0.8390 -0.5935 26 1 1.6583 2.1326 0.0011 27 1 4.1203 2.1326 -0.0074 28 1 5.3517 -0.0001 -0.0090 29 1 4.1206 -2.1324 -0.0015 30 1 0.6353 -2.4568 -0.7201 31 1 2.1231 -3.3143 -0.2521 32 1 2.7283 -2.3282 2.2683 33 1 1.5255 -3.1259 3.3101 34 1 2.3662 -4.0569 2.0473 35 1 -0.8617 -3.5573 0.5149 36 1 0.3178 -4.7496 1.1113 37 1 -1.5814 -4.6618 2.6536 38 1 -0.1500 -3.9689 3.4530 39 1 -3.0361 -3.3502 4.1195 40 1 -1.6049 -2.6575 4.9196 41 1 -4.4144 -1.6112 7.0584 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293466601.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:39 Heat of formation + Delta-G solvation = -43.904086 kcal Electronic energy + Delta-G solvation = -19827.255408 eV Core-core repulsion = 16899.103956 eV Total energy + Delta-G solvation = -2928.151452 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.58839 -38.98495 -37.48404 -34.89556 -33.68826 -32.67788 -30.57645 -28.83854 -28.32429 -27.52502 -25.08938 -24.41067 -22.83374 -22.08262 -21.15983 -18.60209 -17.45397 -17.28081 -17.21702 -16.69992 -16.30992 -16.00579 -15.74346 -15.29439 -15.20932 -14.59924 -14.40810 -13.90947 -13.63827 -13.61815 -13.45417 -13.16970 -13.04733 -12.82009 -12.74488 -12.70791 -12.58975 -12.41541 -12.18014 -11.84009 -11.75222 -11.48861 -11.21044 -10.83950 -10.14616 -9.66264 -9.41532 -9.09943 -8.30494 -6.41753 0.50098 0.56967 1.39699 1.41137 1.56002 2.35931 2.78549 3.03362 3.19589 3.31677 3.88676 3.98705 4.15177 4.17829 4.24912 4.27248 4.36624 4.47139 4.51988 4.56637 4.59075 4.66431 4.74513 4.83256 4.86092 4.88916 4.96965 4.99455 5.07855 5.09746 5.21444 5.24528 5.47191 5.57863 5.63010 5.67553 5.86068 5.99800 6.14796 6.20015 6.25564 6.59877 6.89514 7.30553 8.82260 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019299 B = 0.004826 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.524266 B = 5800.575672 C = 6753.467840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.074 4.074 3 C -0.140 4.140 4 C -0.123 4.123 5 C -0.135 4.135 6 C -0.116 4.116 7 C -0.092 4.092 8 C 0.099 3.901 9 N -0.546 5.546 10 C 0.030 3.970 11 C 0.071 3.929 12 C 0.057 3.943 13 O -0.392 6.392 14 C 0.210 3.790 15 C -0.540 4.540 16 H 0.060 0.940 17 C 0.006 3.994 18 N -0.932 5.932 19 Si 0.980 3.020 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.272 1.272 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.126 0.874 27 H 0.140 0.860 28 H 0.143 0.857 29 H 0.135 0.865 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.036 0.964 39 H -0.017 1.017 40 H -0.021 1.021 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.458 0.050 -14.407 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.075 4.075 3 C -0.158 4.158 4 C -0.142 4.142 5 C -0.153 4.153 6 C -0.135 4.135 7 C -0.093 4.093 8 C -0.028 4.028 9 N -0.270 5.270 10 C -0.118 4.118 11 C -0.057 4.057 12 C -0.021 4.021 13 O -0.311 6.311 14 C 0.135 3.865 15 C -0.578 4.578 16 H 0.078 0.922 17 C -0.192 4.192 18 N -0.572 5.572 19 Si 0.803 3.197 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.198 1.198 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.144 0.856 27 H 0.158 0.842 28 H 0.161 0.839 29 H 0.153 0.847 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.001 0.999 40 H -0.004 1.004 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.146 0.579 -14.221 20.784 hybrid contribution -0.297 -0.426 0.606 0.798 sum 14.849 0.153 -13.615 20.147 Atomic orbital electron populations 1.20656 0.91352 1.02008 1.01926 1.19948 0.96234 0.93247 0.98052 1.21286 0.95161 0.97623 1.01774 1.21401 0.93915 0.99202 0.99632 1.21377 1.00873 0.92165 1.00905 1.21259 0.93070 0.99127 1.00033 1.19768 0.93914 0.94441 1.01171 1.21011 0.97866 0.93689 0.90234 1.61716 1.12834 1.44747 1.07708 1.22336 0.93824 0.99593 0.96014 1.22086 0.93699 0.93674 0.96196 1.22600 0.94448 0.87357 0.97657 1.87902 1.66116 1.36934 1.40155 1.19765 0.89168 0.96183 0.81417 1.21390 1.30071 1.01369 1.04978 0.92187 1.25933 0.96882 1.01875 0.94491 1.70079 1.41119 1.36948 1.09071 0.85179 0.78063 0.77941 0.78503 1.18847 1.19547 1.19765 0.92809 0.91672 0.91540 0.85581 0.84220 0.83915 0.84696 0.89852 0.92485 0.91505 0.93294 0.93904 0.90121 0.91062 0.93617 0.94618 0.99927 1.00351 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.06 9.40 71.24 0.67 -2.39 16 2 C -0.07 -2.07 5.88 -19.86 -0.12 -2.18 16 3 C -0.14 -3.49 9.68 22.27 0.22 -3.28 16 4 C -0.12 -2.58 10.05 22.27 0.22 -2.36 16 5 C -0.14 -2.65 10.05 22.27 0.22 -2.42 16 6 C -0.12 -2.47 9.00 22.27 0.20 -2.27 16 7 C -0.09 -2.34 4.66 -19.87 -0.09 -2.43 16 8 C 0.10 2.36 4.43 85.56 0.38 2.74 16 9 N -0.55 -16.09 4.53 -927.04 -4.20 -20.29 16 10 C 0.03 0.82 9.12 127.69 1.16 1.99 16 11 C 0.07 2.05 5.34 86.31 0.46 2.51 16 12 C 0.06 2.15 5.99 71.98 0.43 2.58 16 13 O -0.39 -19.66 10.27 -148.98 -1.53 -21.20 16 14 C 0.21 12.17 5.69 71.23 0.41 12.58 16 15 C -0.54 -33.06 9.43 25.60 0.24 -32.81 16 16 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 17 C 0.01 0.37 5.46 84.66 0.46 0.83 16 18 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 19 Si 0.98 45.41 29.54 68.60 2.03 47.43 16 20 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.06 1.71 8.05 -2.39 -0.02 1.69 16 25 H 0.07 1.87 6.46 -2.39 -0.02 1.85 16 26 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 27 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 28 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 29 H 0.14 2.25 8.00 -2.91 -0.02 2.22 16 30 H 0.08 1.95 6.40 -2.39 -0.02 1.94 16 31 H 0.06 1.11 7.86 -2.39 -0.02 1.10 16 32 H 0.07 1.77 6.77 -2.39 -0.02 1.76 16 33 H 0.05 1.54 6.54 -2.39 -0.02 1.53 16 34 H 0.04 0.94 8.10 -2.39 -0.02 0.92 16 35 H 0.08 2.31 7.86 -2.38 -0.02 2.30 16 36 H 0.07 1.60 8.09 -2.38 -0.02 1.58 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.04 1.35 6.41 -2.39 -0.02 1.33 16 39 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 40 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 41 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -69.61 336.54 2.43 -67.18 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.98 Total: 10.70 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 4.87 Total: -26.92 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -3.92 Total: -77.20 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -1.53 Total: -21.20 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -69.61 2.43 -67.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293466601.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.274 kcal (2) G-P(sol) polarization free energy of solvation -69.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds