Wall clock time and date at job start Mon Mar 30 2020 06:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38233 * 120.00087 * 2 1 4 4 C 1.38231 * 120.00145 * 180.02562 * 3 2 1 5 5 C 1.38241 * 120.00153 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00180 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.47330 * 90.00176 * 6 5 4 8 8 C 1.46906 * 110.99814 * 293.95439 * 7 6 5 9 9 C 1.46905 * 111.00158 * 170.00077 * 7 6 5 10 10 C 1.52997 * 109.47053 * 189.99961 * 9 7 6 11 11 O 1.42901 * 109.47314 * 64.99816 * 10 9 7 12 12 C 1.42901 * 114.00248 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47193 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00030 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00000 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99899 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99988 * 359.97438 * 15 13 12 18 18 H 1.48493 * 109.46887 * 90.00325 * 17 15 13 19 19 H 1.48503 * 109.46836 * 210.00230 * 17 15 13 20 20 H 1.48503 * 109.46969 * 330.00177 * 17 15 13 21 21 C 1.38233 * 119.99608 * 0.25696 * 5 4 3 22 22 C 1.38236 * 120.00022 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.47592 * 89.99914 * 1 2 3 24 24 H 1.09000 * 109.46856 * 209.99148 * 1 2 3 25 25 H 1.08993 * 109.47107 * 329.99204 * 1 2 3 26 26 H 1.08002 * 119.99743 * 359.97438 * 3 2 1 27 27 H 1.07997 * 120.00104 * 179.97438 * 4 3 2 28 28 H 1.09009 * 109.46871 * 329.99990 * 6 5 4 29 29 H 1.09002 * 109.47358 * 210.00366 * 6 5 4 30 30 H 1.08992 * 109.47459 * 59.99744 * 8 7 6 31 31 H 1.09004 * 109.47040 * 179.97438 * 8 7 6 32 32 H 1.09000 * 109.47033 * 299.99847 * 8 7 6 33 33 H 1.09002 * 109.46783 * 309.99945 * 9 7 6 34 34 H 1.09005 * 109.46676 * 69.99987 * 9 7 6 35 35 H 1.08998 * 109.47100 * 185.00245 * 10 9 7 36 36 H 1.09001 * 109.47321 * 305.00109 * 10 9 7 37 37 H 1.08997 * 109.47007 * 300.00582 * 12 11 10 38 38 H 1.09007 * 109.46536 * 60.00461 * 12 11 10 39 39 H 0.96999 * 119.99845 * 179.97438 * 16 15 13 40 40 H 1.07998 * 119.99645 * 179.72712 * 21 5 4 41 41 H 1.08003 * 120.00272 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7786 0.0000 -0.0028 7 7 6.2694 -0.0007 1.3818 8 6 5.9204 1.2524 2.0646 9 6 7.7183 -0.2388 1.4267 10 6 8.1508 -0.4805 2.8742 11 8 7.5544 -1.6869 3.3546 12 6 7.8963 -2.0069 4.7046 13 6 7.2164 -3.2911 5.1041 14 1 6.5866 -3.8111 4.3976 15 6 7.3985 -3.8022 6.3716 16 7 6.8055 -4.9232 6.7201 17 14 8.4885 -2.9031 7.5936 18 1 7.6700 -1.9373 8.3697 19 1 9.1074 -3.8846 8.5203 20 1 9.5545 -2.1727 6.8619 21 6 3.5805 -1.1971 -0.0075 22 6 2.1981 -1.1972 0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5137 25 1 -0.3633 0.8899 0.5139 26 1 1.6581 2.1324 -0.0004 27 1 4.1204 2.1324 -0.0010 28 1 6.1416 0.8903 -0.5165 29 1 6.1416 -0.8897 -0.5173 30 1 4.8369 1.3693 2.0779 31 1 6.2952 1.2251 3.0878 32 1 6.3700 2.0922 1.5348 33 1 7.9615 -1.1139 0.8239 34 1 8.2420 0.6317 1.0314 35 1 9.2363 -0.5688 2.9192 36 1 7.8285 0.3561 3.4942 37 1 8.9764 -2.1271 4.7871 38 1 7.5689 -1.2021 5.3628 39 1 6.9339 -5.2829 7.6117 40 1 4.1205 -2.1324 -0.0128 41 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293525253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:43 Heat of formation + Delta-G solvation = -20.490243 kcal Electronic energy + Delta-G solvation = -19349.552035 eV Core-core repulsion = 16422.415883 eV Total energy + Delta-G solvation = -2927.136152 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.59738 -37.75307 -36.15849 -33.16097 -32.50256 -30.89967 -29.78774 -28.27697 -27.40966 -25.98540 -23.32164 -22.62139 -21.77339 -20.82784 -20.44434 -16.80456 -16.13007 -16.07014 -15.85588 -15.42742 -15.16533 -14.55494 -14.31552 -14.12528 -13.85384 -13.73445 -13.37099 -12.71537 -12.59869 -12.48555 -12.35595 -12.22011 -11.84349 -11.66293 -11.59730 -11.30965 -10.98005 -10.87400 -10.85625 -10.65475 -10.34301 -9.80794 -9.10353 -8.84156 -8.76617 -8.52674 -8.37586 -8.04947 -6.05845 -4.03862 1.34812 1.47793 3.28031 3.34579 3.36264 3.68308 4.26970 4.40201 4.68744 4.77875 4.81037 4.96000 5.05186 5.11310 5.25481 5.32631 5.39851 5.46746 5.49259 5.51311 5.53446 5.67290 5.73385 5.77134 5.79427 5.85771 5.94488 6.11704 6.13042 6.14595 6.24071 6.44893 6.62815 6.66731 6.70782 7.05409 7.06777 7.21916 7.24165 7.66791 8.12296 8.75554 9.07758 9.54139 11.07438 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020369 B = 0.004116 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.314843 B = 6801.158604 C = 7634.097030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.126 4.126 4 C -0.112 4.112 5 C -0.078 4.078 6 C 0.095 3.905 7 N -0.522 5.522 8 C 0.021 3.979 9 C 0.061 3.939 10 C 0.062 3.938 11 O -0.364 6.364 12 C 0.168 3.832 13 C -0.514 4.514 14 H 0.083 0.917 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.875 3.125 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.267 1.267 21 C -0.089 4.089 22 C -0.120 4.120 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.018 0.982 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.038 0.962 37 H 0.000 1.000 38 H -0.004 1.004 39 H 0.265 0.735 40 H 0.126 0.874 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.180 14.239 -15.308 21.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.130 4.130 5 C -0.078 4.078 6 C -0.033 4.033 7 N -0.245 5.245 8 C -0.127 4.127 9 C -0.066 4.066 10 C -0.016 4.016 11 O -0.283 6.283 12 C 0.092 3.908 13 C -0.552 4.552 14 H 0.101 0.899 15 C -0.130 4.130 16 N -0.536 5.536 17 Si 0.702 3.298 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.107 4.107 22 C -0.138 4.138 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.036 0.964 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.017 0.983 38 H 0.013 0.987 39 H 0.075 0.925 40 H 0.144 0.856 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.535 13.596 -15.009 21.279 hybrid contribution 1.160 1.251 0.643 1.824 sum -5.375 14.847 -14.366 21.347 Atomic orbital electron populations 1.20774 0.91494 1.02733 1.01980 1.19893 0.95895 0.93315 1.00083 1.20920 0.94060 0.97324 1.02058 1.20985 0.94141 0.97347 1.00576 1.19715 0.95056 0.93190 0.99883 1.21051 0.91171 1.01157 0.89897 1.61848 1.13747 1.34832 1.14114 1.22500 1.01830 0.88897 0.99489 1.22149 0.87053 1.00211 0.97233 1.22354 0.95781 0.89740 0.93772 1.88014 1.71182 1.38660 1.30401 1.20575 0.94642 0.96150 0.79385 1.20903 1.29609 1.05514 0.99145 0.89913 1.24766 0.95681 0.94899 0.97660 1.69882 1.43561 1.19955 1.20200 0.86863 0.81413 0.79948 0.81585 1.19996 1.20844 1.19173 1.21084 0.93926 0.97977 0.97716 1.21055 0.94291 0.97481 1.01002 0.91467 0.91524 0.91761 0.86488 0.86632 0.94540 0.89896 0.91130 0.90973 0.96363 0.89930 0.94272 0.94166 0.94393 0.98283 0.98679 0.92464 0.85628 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.00 0.36 -0.62 16 2 C -0.09 -1.04 5.88 -104.63 -0.62 -1.66 16 3 C -0.13 -1.40 9.70 -39.59 -0.38 -1.78 16 4 C -0.11 -1.31 7.97 -39.58 -0.32 -1.62 16 5 C -0.08 -1.02 4.88 -104.63 -0.51 -1.53 16 6 C 0.09 1.20 5.12 -4.98 -0.03 1.17 16 7 N -0.52 -7.98 4.70 -244.36 -1.15 -9.13 16 8 C 0.02 0.29 8.95 60.07 0.54 0.82 16 9 C 0.06 0.90 5.34 -3.82 -0.02 0.88 16 10 C 0.06 1.11 6.00 37.16 0.22 1.33 16 11 O -0.36 -8.78 10.27 -35.23 -0.36 -9.14 16 12 C 0.17 4.40 4.76 36.00 0.17 4.58 16 13 C -0.51 -15.71 9.99 -34.44 -0.34 -16.05 16 14 H 0.08 2.78 8.06 -52.49 -0.42 2.35 16 15 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 16 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 17 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 21 C -0.09 -1.20 9.70 -39.58 -0.38 -1.58 16 22 C -0.12 -1.49 9.70 -39.58 -0.38 -1.87 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 25 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 26 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 27 H 0.12 1.16 8.03 -52.49 -0.42 0.74 16 28 H 0.04 0.40 8.07 -51.92 -0.42 -0.01 16 29 H 0.08 1.01 7.87 -51.93 -0.41 0.60 16 30 H 0.07 0.97 6.17 -51.93 -0.32 0.65 16 31 H 0.07 1.07 6.21 -51.93 -0.32 0.75 16 32 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.08 1.21 7.93 -51.93 -0.41 0.80 16 34 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.66 6.26 -51.93 -0.33 0.33 16 37 H 0.00 -0.01 7.20 -51.93 -0.37 -0.39 16 38 H 0.00 -0.11 7.57 -51.93 -0.39 -0.51 16 39 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -33.41 335.19 -8.93 -42.34 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -6.78 Total: -2.96 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -1.79 Total: -15.88 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.38 Total: -36.58 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.36 Total: -9.14 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.41 -8.93 -42.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293525253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.845 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds