Wall clock time and date at job start Mon Mar 30 2020 06:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38233 * 120.00087 * 2 1 4 4 C 1.38231 * 120.00145 * 180.02562 * 3 2 1 5 5 C 1.38241 * 120.00153 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00180 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.47330 * 90.00176 * 6 5 4 8 8 C 1.46906 * 110.99814 * 293.95439 * 7 6 5 9 9 C 1.46905 * 111.00158 * 170.00077 * 7 6 5 10 10 C 1.52997 * 109.47053 * 189.99961 * 9 7 6 11 11 O 1.42901 * 109.47314 * 64.99816 * 10 9 7 12 12 C 1.42901 * 114.00248 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47193 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00030 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00000 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99899 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99988 * 359.97438 * 15 13 12 18 18 H 1.48493 * 109.46887 * 90.00325 * 17 15 13 19 19 H 1.48503 * 109.46836 * 210.00230 * 17 15 13 20 20 H 1.48503 * 109.46969 * 330.00177 * 17 15 13 21 21 C 1.38233 * 119.99608 * 0.25696 * 5 4 3 22 22 C 1.38236 * 120.00022 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.47592 * 89.99914 * 1 2 3 24 24 H 1.09000 * 109.46856 * 209.99148 * 1 2 3 25 25 H 1.08993 * 109.47107 * 329.99204 * 1 2 3 26 26 H 1.08002 * 119.99743 * 359.97438 * 3 2 1 27 27 H 1.07997 * 120.00104 * 179.97438 * 4 3 2 28 28 H 1.09009 * 109.46871 * 329.99990 * 6 5 4 29 29 H 1.09002 * 109.47358 * 210.00366 * 6 5 4 30 30 H 1.08992 * 109.47459 * 59.99744 * 8 7 6 31 31 H 1.09004 * 109.47040 * 179.97438 * 8 7 6 32 32 H 1.09000 * 109.47033 * 299.99847 * 8 7 6 33 33 H 1.09002 * 109.46783 * 309.99945 * 9 7 6 34 34 H 1.09005 * 109.46676 * 69.99987 * 9 7 6 35 35 H 1.08998 * 109.47100 * 185.00245 * 10 9 7 36 36 H 1.09001 * 109.47321 * 305.00109 * 10 9 7 37 37 H 1.08997 * 109.47007 * 300.00582 * 12 11 10 38 38 H 1.09007 * 109.46536 * 60.00461 * 12 11 10 39 39 H 0.96999 * 119.99845 * 179.97438 * 16 15 13 40 40 H 1.07998 * 119.99645 * 179.72712 * 21 5 4 41 41 H 1.08003 * 120.00272 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7786 0.0000 -0.0028 7 7 6.2694 -0.0007 1.3818 8 6 5.9204 1.2524 2.0646 9 6 7.7183 -0.2388 1.4267 10 6 8.1508 -0.4805 2.8742 11 8 7.5544 -1.6869 3.3546 12 6 7.8963 -2.0069 4.7046 13 6 7.2164 -3.2911 5.1041 14 1 6.5866 -3.8111 4.3976 15 6 7.3985 -3.8022 6.3716 16 7 6.8055 -4.9232 6.7201 17 14 8.4885 -2.9031 7.5936 18 1 7.6700 -1.9373 8.3697 19 1 9.1074 -3.8846 8.5203 20 1 9.5545 -2.1727 6.8619 21 6 3.5805 -1.1971 -0.0075 22 6 2.1981 -1.1972 0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5137 25 1 -0.3633 0.8899 0.5139 26 1 1.6581 2.1324 -0.0004 27 1 4.1204 2.1324 -0.0010 28 1 6.1416 0.8903 -0.5165 29 1 6.1416 -0.8897 -0.5173 30 1 4.8369 1.3693 2.0779 31 1 6.2952 1.2251 3.0878 32 1 6.3700 2.0922 1.5348 33 1 7.9615 -1.1139 0.8239 34 1 8.2420 0.6317 1.0314 35 1 9.2363 -0.5688 2.9192 36 1 7.8285 0.3561 3.4942 37 1 8.9764 -2.1271 4.7871 38 1 7.5689 -1.2021 5.3628 39 1 6.9339 -5.2829 7.6117 40 1 4.1205 -2.1324 -0.0128 41 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293525253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:42 Heat of formation + Delta-G solvation = -42.331072 kcal Electronic energy + Delta-G solvation = -19350.499125 eV Core-core repulsion = 16422.415883 eV Total energy + Delta-G solvation = -2928.083241 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.53483 -39.09930 -37.64383 -34.88548 -33.99071 -31.82018 -31.20575 -29.63775 -28.94364 -27.02483 -24.42089 -23.92564 -23.54293 -21.98021 -21.42637 -19.03232 -17.47190 -17.33356 -17.07884 -16.60323 -16.34089 -16.02923 -15.83855 -15.41030 -15.11124 -14.66102 -14.51864 -14.27495 -14.01352 -13.75337 -13.42818 -13.31453 -13.04918 -12.80422 -12.76714 -12.60146 -12.55607 -12.39493 -12.04901 -11.81789 -11.76233 -11.66401 -11.28342 -10.91409 -10.27614 -9.77602 -9.44534 -9.08511 -8.36581 -6.44149 0.42560 0.54240 1.32294 1.36009 1.46884 2.29704 2.72294 2.95816 3.11716 3.28824 3.85171 3.92847 4.10714 4.12635 4.17912 4.26082 4.29804 4.43832 4.51810 4.52885 4.59551 4.62803 4.65233 4.74497 4.75022 4.84805 4.89330 4.93332 5.00075 5.03052 5.09401 5.22543 5.31291 5.45573 5.53202 5.73458 5.75360 5.95248 6.12583 6.19588 6.20881 6.60268 6.82740 7.20696 8.80993 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020369 B = 0.004116 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.314843 B = 6801.158604 C = 7634.097030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.129 4.129 4 C -0.113 4.113 5 C -0.093 4.093 6 C 0.099 3.901 7 N -0.555 5.555 8 C 0.025 3.975 9 C 0.067 3.933 10 C 0.051 3.949 11 O -0.394 6.394 12 C 0.180 3.820 13 C -0.544 4.544 14 H 0.026 0.974 15 C 0.012 3.988 16 N -0.944 5.944 17 Si 0.957 3.043 18 H -0.260 1.260 19 H -0.272 1.272 20 H -0.245 1.245 21 C -0.114 4.114 22 C -0.137 4.137 23 H 0.081 0.919 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.143 0.857 27 H 0.136 0.864 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.011 0.989 38 H 0.005 0.995 39 H 0.273 0.727 40 H 0.111 0.889 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.297 17.246 -15.125 23.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.131 4.131 5 C -0.094 4.094 6 C -0.027 4.027 7 N -0.280 5.280 8 C -0.123 4.123 9 C -0.061 4.061 10 C -0.026 4.026 11 O -0.313 6.313 12 C 0.104 3.896 13 C -0.581 4.581 14 H 0.045 0.955 15 C -0.186 4.186 16 N -0.584 5.584 17 Si 0.778 3.222 18 H -0.185 1.185 19 H -0.197 1.197 20 H -0.168 1.168 21 C -0.133 4.133 22 C -0.155 4.155 23 H 0.100 0.900 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.161 0.839 27 H 0.154 0.846 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.029 0.971 38 H 0.023 0.977 39 H 0.082 0.918 40 H 0.130 0.870 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.656 16.614 -14.858 22.995 hybrid contribution 0.782 0.272 0.487 0.960 sum -4.874 16.886 -14.372 22.703 Atomic orbital electron populations 1.20819 0.89497 1.03390 1.03095 1.20265 0.97494 0.92996 0.99099 1.21289 0.94128 0.98261 1.01049 1.21230 0.94625 0.97499 0.99788 1.19850 0.95414 0.93503 1.00590 1.21024 0.90962 1.01977 0.88767 1.61766 1.14174 1.36183 1.15864 1.22435 1.01677 0.89282 0.98856 1.22106 0.87418 1.01504 0.95028 1.22745 0.96679 0.87497 0.95652 1.87970 1.72352 1.41798 1.29212 1.20267 0.94402 0.94038 0.80871 1.21172 1.30159 1.07722 0.99079 0.95521 1.25864 0.97172 0.95677 0.99851 1.70044 1.45127 1.21882 1.21298 0.85588 0.79455 0.78852 0.78298 1.18494 1.19680 1.16813 1.21173 0.94734 0.98030 0.99362 1.21257 0.94084 0.98611 1.01557 0.90030 0.91498 0.90490 0.83915 0.84647 0.92245 0.90376 0.91601 0.92490 0.93622 0.90532 0.90571 0.92392 0.93449 0.97137 0.97709 0.91825 0.87039 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 10.01 71.23 0.71 -1.03 16 2 C -0.10 -2.15 5.88 -19.87 -0.12 -2.27 16 3 C -0.13 -2.64 9.70 22.27 0.22 -2.43 16 4 C -0.11 -2.46 7.97 22.27 0.18 -2.29 16 5 C -0.09 -2.41 4.88 -19.87 -0.10 -2.51 16 6 C 0.10 2.44 5.12 85.56 0.44 2.88 16 7 N -0.56 -16.48 4.70 -927.02 -4.36 -20.84 16 8 C 0.03 0.65 8.95 127.69 1.14 1.79 16 9 C 0.07 1.86 5.34 86.30 0.46 2.32 16 10 C 0.05 1.77 6.00 71.98 0.43 2.20 16 11 O -0.39 -19.17 10.27 -148.98 -1.53 -20.70 16 12 C 0.18 9.40 4.76 71.23 0.34 9.74 16 13 C -0.54 -34.40 9.99 25.60 0.26 -34.15 16 14 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 15 C 0.01 0.73 5.47 84.65 0.46 1.19 16 16 N -0.94 -60.92 13.96 21.45 0.30 -60.62 16 17 Si 0.96 44.40 27.47 68.60 1.88 46.28 16 18 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.24 -10.42 6.54 99.48 0.65 -9.77 16 21 C -0.11 -3.24 9.70 22.27 0.22 -3.03 16 22 C -0.14 -3.49 9.70 22.27 0.22 -3.28 16 23 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 25 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 26 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 27 H 0.14 2.33 8.03 -2.91 -0.02 2.31 16 28 H 0.06 1.17 8.07 -2.38 -0.02 1.15 16 29 H 0.08 1.93 7.87 -2.39 -0.02 1.91 16 30 H 0.07 1.73 6.17 -2.39 -0.01 1.71 16 31 H 0.06 1.61 6.21 -2.38 -0.01 1.60 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 2.20 7.93 -2.39 -0.02 2.18 16 34 H 0.08 1.57 8.12 -2.38 -0.02 1.56 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.05 1.54 6.26 -2.39 -0.01 1.53 16 37 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 38 H 0.01 0.26 7.57 -2.38 -0.02 0.24 16 39 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 40 H 0.11 3.31 8.06 -2.91 -0.02 3.29 16 41 H 0.13 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -74.84 335.19 2.07 -72.77 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.92 Total: 13.96 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 4.86 Total: -30.85 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -4.06 Total: -81.46 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -1.53 Total: -20.70 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.88 Total: 46.28 kcal Total: -74.84 2.07 -72.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293525253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.434 kcal (2) G-P(sol) polarization free energy of solvation -74.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds