Wall clock time and date at job start Mon Mar 30 2020 06:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38312 * 119.96161 * 2 1 4 4 C 1.38259 * 120.14862 * 180.02562 * 3 2 1 5 5 C 1.38127 * 120.07324 * 359.73882 * 4 3 2 6 6 C 1.50707 * 120.03662 * 180.27747 * 5 4 3 7 7 C 1.38890 * 119.92430 * 0.53200 * 5 4 3 8 8 N 1.39678 * 120.07394 * 179.74613 * 7 5 4 9 9 C 1.46901 * 111.00062 * 115.77031 * 8 7 5 10 10 C 1.46899 * 110.99902 * 239.72557 * 8 7 5 11 11 C 1.53002 * 109.47321 * 71.79897 * 10 8 7 12 12 O 1.42901 * 109.47053 * 65.28996 * 11 10 8 13 13 C 1.42899 * 113.99936 * 180.02562 * 12 11 10 14 14 C 1.50693 * 109.47110 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00576 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99720 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99758 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00305 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.46697 * 89.99997 * 18 16 14 20 20 H 1.48496 * 109.47383 * 209.99927 * 18 16 14 21 21 H 1.48504 * 109.46837 * 330.00214 * 18 16 14 22 22 C 1.38082 * 119.96273 * 180.02562 * 2 1 3 23 23 H 1.08997 * 109.47419 * 269.98541 * 1 2 3 24 24 H 1.09008 * 109.46991 * 29.97985 * 1 2 3 25 25 H 1.08998 * 109.47051 * 149.97920 * 1 2 3 26 26 H 1.08000 * 119.92271 * 0.02562 * 3 2 1 27 27 H 1.07999 * 119.96198 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46599 * 270.25565 * 6 5 4 29 29 H 1.08995 * 109.47228 * 30.25630 * 6 5 4 30 30 H 1.08996 * 109.47023 * 150.25553 * 6 5 4 31 31 H 1.08996 * 109.47079 * 179.13278 * 9 8 7 32 32 H 1.09002 * 109.46762 * 299.13370 * 9 8 7 33 33 H 1.09002 * 109.46877 * 59.13018 * 9 8 7 34 34 H 1.09006 * 109.47088 * 191.79594 * 10 8 7 35 35 H 1.08998 * 109.47158 * 311.79592 * 10 8 7 36 36 H 1.08999 * 109.47199 * 185.29251 * 11 10 8 37 37 H 1.09001 * 109.46596 * 305.29318 * 11 10 8 38 38 H 1.09000 * 109.47036 * 300.00101 * 13 12 11 39 39 H 1.09003 * 109.47138 * 60.00093 * 13 12 11 40 40 H 0.96994 * 120.00126 * 179.97438 * 17 16 14 41 41 H 1.08002 * 120.03461 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5804 1.2028 -0.0005 5 6 4.2764 0.0097 0.0044 6 6 5.7835 0.0156 0.0101 7 6 3.5859 -1.1953 -0.0013 8 7 4.2867 -2.4036 -0.0017 9 6 4.0303 -3.1613 1.2304 10 6 3.9572 -3.2028 -1.1894 11 6 4.5882 -2.5615 -2.4269 12 8 6.0120 -2.6217 -2.3210 13 6 6.7023 -2.0458 -3.4318 14 6 8.1890 -2.1633 -3.2150 15 1 8.5688 -2.6313 -2.3189 16 6 9.0644 -1.6732 -4.1609 17 7 10.3619 -1.7761 -3.9719 18 14 8.4076 -0.8630 -5.7106 19 1 8.2379 0.5932 -5.4739 20 1 9.3665 -1.0750 -6.8245 21 1 7.0963 -1.4631 -6.0652 22 6 2.1967 -1.1963 -0.0005 23 1 -0.3634 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6559 2.1325 0.0004 27 1 4.1167 2.1402 -0.0001 28 1 6.1506 0.0197 -1.0162 29 1 6.1414 0.9057 0.5276 30 1 6.1483 -0.8742 0.5230 31 1 4.5758 -4.1043 1.1972 32 1 4.3623 -2.5795 2.0903 33 1 2.9625 -3.3620 1.3179 34 1 4.3456 -4.2139 -1.0662 35 1 2.8749 -3.2418 -1.3123 36 1 4.2671 -3.0996 -3.3188 37 1 4.2728 -1.5205 -2.4973 38 1 6.4251 -2.5728 -4.3448 39 1 6.4308 -0.9941 -3.5227 40 1 10.9777 -1.4317 -4.6374 41 1 1.6566 -2.1316 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293559896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:53 Heat of formation + Delta-G solvation = -19.182876 kcal Electronic energy + Delta-G solvation = -20199.827640 eV Core-core repulsion = 17272.748180 eV Total energy + Delta-G solvation = -2927.079460 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.09262 -37.30643 -36.03990 -33.54085 -32.58960 -30.22149 -29.46498 -28.97931 -27.47684 -25.35200 -24.33579 -22.88928 -21.75021 -21.05252 -19.91757 -16.85542 -16.28179 -15.83685 -15.72903 -15.42855 -15.18436 -14.29132 -14.09848 -14.03853 -13.71777 -13.49162 -12.83074 -12.73306 -12.65103 -12.53294 -12.39383 -12.20735 -11.93521 -11.68725 -11.42615 -11.22460 -11.10470 -10.90965 -10.84748 -10.67426 -10.43236 -9.81605 -9.10752 -8.76632 -8.69430 -8.38266 -8.28446 -8.15469 -6.06668 -4.04557 1.38998 1.45972 3.27579 3.34519 3.36561 3.76420 3.95917 4.39803 4.70681 4.81670 4.87501 5.07215 5.23067 5.24907 5.28319 5.33946 5.42388 5.46454 5.49091 5.63540 5.69925 5.73091 5.81596 5.91111 5.94112 5.97088 6.05630 6.14531 6.21278 6.34629 6.49987 6.57705 6.65629 6.71578 6.92345 7.02052 7.05296 7.10216 7.61865 7.66609 8.12132 8.74954 9.06878 9.53702 11.06503 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023146 B = 0.005119 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.429173 B = 5468.511297 C = 5792.775980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.094 4.094 3 C -0.123 4.123 4 C -0.118 4.118 5 C -0.053 4.053 6 C -0.107 4.107 7 C 0.095 3.905 8 N -0.492 5.492 9 C 0.033 3.967 10 C 0.065 3.935 11 C 0.065 3.935 12 O -0.362 6.362 13 C 0.169 3.831 14 C -0.512 4.512 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.873 3.127 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.267 1.267 22 C -0.149 4.149 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.023 0.977 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.039 0.961 37 H 0.036 0.964 38 H -0.002 1.002 39 H -0.005 1.005 40 H 0.265 0.735 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.313 2.933 8.770 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.141 4.141 4 C -0.136 4.136 5 C -0.054 4.054 6 C -0.163 4.163 7 C 0.001 3.999 8 N -0.213 5.213 9 C -0.114 4.114 10 C -0.062 4.062 11 C -0.013 4.013 12 O -0.281 6.281 13 C 0.093 3.907 14 C -0.550 4.550 15 H 0.101 0.899 16 C -0.129 4.129 17 N -0.536 5.536 18 Si 0.700 3.300 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.169 4.169 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.135 0.865 27 H 0.141 0.859 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.013 0.987 40 H 0.075 0.925 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.506 2.959 8.827 20.715 hybrid contribution -1.266 0.417 -1.175 1.777 sum -19.772 3.376 7.652 21.468 Atomic orbital electron populations 1.20742 0.91599 1.02432 1.01905 1.19674 0.95638 0.92976 1.01211 1.20961 0.94200 0.97161 1.01773 1.21029 0.93943 0.97633 1.01015 1.20028 0.97200 0.91235 0.96926 1.20688 0.89624 1.02289 1.03710 1.18682 0.89671 0.91266 1.00245 1.59471 1.56479 1.02849 1.02466 1.22403 0.98750 0.98529 0.91718 1.22236 0.97027 0.97499 0.89405 1.22253 0.85302 0.98575 0.95181 1.87989 1.14104 1.81207 1.44815 1.20559 0.93535 0.91555 0.85035 1.20884 0.87463 1.39018 1.07635 0.89887 1.24751 0.94659 0.95656 0.97839 1.69877 1.01385 1.46674 1.35634 0.86899 0.79232 0.80368 0.83545 1.19977 1.20858 1.19205 1.21446 0.94572 0.97635 1.03246 0.91568 0.91743 0.91945 0.86452 0.85898 0.90121 0.92927 0.89998 0.90770 0.91368 0.95847 0.89640 0.93803 0.94283 0.94542 0.98419 0.98737 0.92472 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.01 0.36 -0.60 16 2 C -0.09 -1.12 5.88 -104.65 -0.62 -1.73 16 3 C -0.12 -1.47 9.70 -39.55 -0.38 -1.85 16 4 C -0.12 -1.57 9.70 -39.61 -0.38 -1.96 16 5 C -0.05 -0.82 5.90 -104.42 -0.62 -1.43 16 6 C -0.11 -1.78 9.77 36.01 0.35 -1.42 16 7 C 0.10 1.42 3.78 -83.79 -0.32 1.10 16 8 N -0.49 -7.54 3.61 -178.95 -0.65 -8.19 16 9 C 0.03 0.40 9.38 60.06 0.56 0.97 16 10 C 0.06 0.98 5.26 -3.82 -0.02 0.96 16 11 C 0.07 1.20 6.08 37.16 0.23 1.43 16 12 O -0.36 -8.54 10.28 -35.23 -0.36 -8.90 16 13 C 0.17 4.36 4.76 36.00 0.17 4.53 16 14 C -0.51 -15.31 9.99 -34.44 -0.34 -15.66 16 15 H 0.08 2.72 8.06 -52.49 -0.42 2.30 16 16 C 0.07 2.14 5.47 -17.81 -0.10 2.05 16 17 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 18 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 22 C -0.15 -1.93 8.07 -39.38 -0.32 -2.25 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.50 8.09 -51.92 -0.42 0.08 16 25 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 27 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 29 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 30 H 0.08 1.46 7.46 -51.93 -0.39 1.07 16 31 H 0.07 0.87 7.98 -51.93 -0.41 0.45 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.02 0.25 7.32 -51.93 -0.38 -0.13 16 34 H 0.09 1.25 7.89 -51.93 -0.41 0.84 16 35 H 0.04 0.57 6.78 -51.93 -0.35 0.21 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.04 0.69 7.45 -51.93 -0.39 0.30 16 38 H 0.00 -0.05 7.20 -51.93 -0.37 -0.42 16 39 H -0.01 -0.13 7.57 -51.93 -0.39 -0.52 16 40 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.11 1.33 7.02 -52.49 -0.37 0.96 16 LS Contribution 335.77 15.07 5.06 5.06 Total: -1.00 -32.15 335.77 -8.12 -40.27 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.85 Total: -2.34 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -1.42 Total: -15.87 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.13 Total: -35.28 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.36 Total: -8.90 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.15 -8.12 -40.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293559896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.089 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds