Wall clock time and date at job start Mon Mar 30 2020 06:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38312 * 119.96161 * 2 1 4 4 C 1.38259 * 120.14862 * 180.02562 * 3 2 1 5 5 C 1.38127 * 120.07324 * 359.73882 * 4 3 2 6 6 C 1.50707 * 120.03662 * 180.27747 * 5 4 3 7 7 C 1.38890 * 119.92430 * 0.53200 * 5 4 3 8 8 N 1.39678 * 120.07394 * 179.74613 * 7 5 4 9 9 C 1.46901 * 111.00062 * 115.77031 * 8 7 5 10 10 C 1.46899 * 110.99902 * 239.72557 * 8 7 5 11 11 C 1.53002 * 109.47321 * 71.79897 * 10 8 7 12 12 O 1.42901 * 109.47053 * 65.28996 * 11 10 8 13 13 C 1.42899 * 113.99936 * 180.02562 * 12 11 10 14 14 C 1.50693 * 109.47110 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00576 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99720 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99758 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00305 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.46697 * 89.99997 * 18 16 14 20 20 H 1.48496 * 109.47383 * 209.99927 * 18 16 14 21 21 H 1.48504 * 109.46837 * 330.00214 * 18 16 14 22 22 C 1.38082 * 119.96273 * 180.02562 * 2 1 3 23 23 H 1.08997 * 109.47419 * 269.98541 * 1 2 3 24 24 H 1.09008 * 109.46991 * 29.97985 * 1 2 3 25 25 H 1.08998 * 109.47051 * 149.97920 * 1 2 3 26 26 H 1.08000 * 119.92271 * 0.02562 * 3 2 1 27 27 H 1.07999 * 119.96198 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46599 * 270.25565 * 6 5 4 29 29 H 1.08995 * 109.47228 * 30.25630 * 6 5 4 30 30 H 1.08996 * 109.47023 * 150.25553 * 6 5 4 31 31 H 1.08996 * 109.47079 * 179.13278 * 9 8 7 32 32 H 1.09002 * 109.46762 * 299.13370 * 9 8 7 33 33 H 1.09002 * 109.46877 * 59.13018 * 9 8 7 34 34 H 1.09006 * 109.47088 * 191.79594 * 10 8 7 35 35 H 1.08998 * 109.47158 * 311.79592 * 10 8 7 36 36 H 1.08999 * 109.47199 * 185.29251 * 11 10 8 37 37 H 1.09001 * 109.46596 * 305.29318 * 11 10 8 38 38 H 1.09000 * 109.47036 * 300.00101 * 13 12 11 39 39 H 1.09003 * 109.47138 * 60.00093 * 13 12 11 40 40 H 0.96994 * 120.00126 * 179.97438 * 17 16 14 41 41 H 1.08002 * 120.03461 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5804 1.2028 -0.0005 5 6 4.2764 0.0097 0.0044 6 6 5.7835 0.0156 0.0101 7 6 3.5859 -1.1953 -0.0013 8 7 4.2867 -2.4036 -0.0017 9 6 4.0303 -3.1613 1.2304 10 6 3.9572 -3.2028 -1.1894 11 6 4.5882 -2.5615 -2.4269 12 8 6.0120 -2.6217 -2.3210 13 6 6.7023 -2.0458 -3.4318 14 6 8.1890 -2.1633 -3.2150 15 1 8.5688 -2.6313 -2.3189 16 6 9.0644 -1.6732 -4.1609 17 7 10.3619 -1.7761 -3.9719 18 14 8.4076 -0.8630 -5.7106 19 1 8.2379 0.5932 -5.4739 20 1 9.3665 -1.0750 -6.8245 21 1 7.0963 -1.4631 -6.0652 22 6 2.1967 -1.1963 -0.0005 23 1 -0.3634 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6559 2.1325 0.0004 27 1 4.1167 2.1402 -0.0001 28 1 6.1506 0.0197 -1.0162 29 1 6.1414 0.9057 0.5276 30 1 6.1483 -0.8742 0.5230 31 1 4.5758 -4.1043 1.1972 32 1 4.3623 -2.5795 2.0903 33 1 2.9625 -3.3620 1.3179 34 1 4.3456 -4.2139 -1.0662 35 1 2.8749 -3.2418 -1.3123 36 1 4.2671 -3.0996 -3.3188 37 1 4.2728 -1.5205 -2.4973 38 1 6.4251 -2.5728 -4.3448 39 1 6.4308 -0.9941 -3.5227 40 1 10.9777 -1.4317 -4.6374 41 1 1.6566 -2.1316 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293559896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:52 Heat of formation + Delta-G solvation = -38.715400 kcal Electronic energy + Delta-G solvation = -20200.674634 eV Core-core repulsion = 17272.748180 eV Total energy + Delta-G solvation = -2927.926454 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13822 -38.76068 -37.42931 -34.85074 -34.53411 -31.60564 -30.65746 -29.96058 -29.40837 -26.38742 -25.39383 -24.17914 -23.84435 -22.15966 -20.96215 -19.03729 -17.61773 -17.16548 -17.03964 -16.76205 -16.42713 -16.06707 -15.61839 -15.05787 -14.82975 -14.64986 -14.56115 -14.00367 -13.80418 -13.70325 -13.66553 -13.39879 -13.25658 -12.94652 -12.79943 -12.68213 -12.52019 -12.26147 -12.12143 -11.99378 -11.87434 -11.80127 -11.30739 -10.91446 -10.30203 -9.68239 -9.33736 -9.20180 -8.35949 -6.42478 0.39543 0.45500 1.31441 1.33979 1.44812 2.28966 2.75714 2.88712 2.96460 3.13996 3.93412 3.97360 4.06834 4.15083 4.19799 4.36937 4.38348 4.46321 4.49187 4.57596 4.60067 4.61123 4.76664 4.80867 4.85345 4.87953 4.91097 4.93447 4.97299 5.00743 5.02077 5.22615 5.45771 5.48391 5.51269 5.64484 5.74054 5.94684 6.00972 6.03815 6.56120 6.61687 6.81094 7.21834 8.81284 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023146 B = 0.005119 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.429173 B = 5468.511297 C = 5792.775980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.090 4.090 3 C -0.125 4.125 4 C -0.122 4.122 5 C -0.086 4.086 6 C -0.094 4.094 7 C 0.084 3.916 8 N -0.519 5.519 9 C 0.036 3.964 10 C 0.071 3.929 11 C 0.060 3.940 12 O -0.385 6.385 13 C 0.182 3.818 14 C -0.536 4.536 15 H 0.031 0.969 16 C 0.016 3.984 17 N -0.942 5.942 18 Si 0.949 3.051 19 H -0.261 1.261 20 H -0.271 1.271 21 H -0.249 1.249 22 C -0.154 4.154 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.145 0.855 27 H 0.134 0.866 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.031 0.969 38 H 0.007 0.993 39 H -0.001 1.001 40 H 0.272 0.728 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.759 3.852 7.887 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.140 4.140 5 C -0.087 4.087 6 C -0.151 4.151 7 C -0.010 4.010 8 N -0.241 5.241 9 C -0.110 4.110 10 C -0.056 4.056 11 C -0.018 4.018 12 O -0.304 6.304 13 C 0.106 3.894 14 C -0.574 4.574 15 H 0.050 0.950 16 C -0.182 4.182 17 N -0.581 5.581 18 Si 0.771 3.229 19 H -0.186 1.186 20 H -0.196 1.196 21 H -0.173 1.173 22 C -0.174 4.174 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.163 0.837 27 H 0.152 0.848 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.024 0.976 39 H 0.017 0.983 40 H 0.081 0.919 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.971 3.864 7.967 23.688 hybrid contribution -0.206 0.110 -0.772 0.807 sum -22.177 3.974 7.194 23.651 Atomic orbital electron populations 1.20803 0.89057 1.03539 1.03085 1.20111 0.97483 0.92420 0.99106 1.21298 0.93591 0.98586 1.00788 1.21221 0.94947 0.97300 1.00551 1.20044 0.96116 0.92741 0.99808 1.20470 0.91534 1.01965 1.01145 1.18784 0.90640 0.90724 1.00823 1.59370 1.57767 1.03572 1.03363 1.22399 1.00062 0.98142 0.90441 1.22192 0.98282 0.97006 0.88075 1.22553 0.82398 0.98979 0.97860 1.87954 1.17263 1.81016 1.44139 1.20228 0.91224 0.91947 0.85954 1.21095 0.90352 1.39529 1.06380 0.95046 1.25758 0.94685 0.95875 1.01863 1.70028 1.03105 1.47603 1.37393 0.85695 0.79398 0.79565 0.78232 1.18615 1.19584 1.17261 1.21598 0.93634 0.98935 1.03200 0.90216 0.90425 0.91136 0.83719 0.84798 0.93849 0.91418 0.92156 0.90603 0.91705 0.93779 0.89467 0.90820 0.92644 0.95102 0.97572 0.98290 0.91860 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 71.24 0.71 -0.73 16 2 C -0.09 -1.85 5.88 -19.88 -0.12 -1.97 16 3 C -0.12 -2.64 9.70 22.29 0.22 -2.42 16 4 C -0.12 -3.12 9.70 22.25 0.22 -2.90 16 5 C -0.09 -2.68 5.90 -19.73 -0.12 -2.79 16 6 C -0.09 -3.34 9.77 71.24 0.70 -2.64 16 7 C 0.08 2.44 3.78 38.21 0.14 2.59 16 8 N -0.52 -15.81 3.61 -720.08 -2.60 -18.41 16 9 C 0.04 0.86 9.38 127.69 1.20 2.05 16 10 C 0.07 2.05 5.26 86.30 0.45 2.51 16 11 C 0.06 2.17 6.08 71.98 0.44 2.60 16 12 O -0.38 -18.59 10.28 -148.98 -1.53 -20.12 16 13 C 0.18 9.55 4.76 71.23 0.34 9.89 16 14 C -0.54 -33.41 9.99 25.60 0.26 -33.15 16 15 H 0.03 2.20 8.06 -2.91 -0.02 2.18 16 16 C 0.02 0.97 5.47 84.66 0.46 1.43 16 17 N -0.94 -60.18 13.96 21.45 0.30 -59.88 16 18 Si 0.95 44.59 27.47 68.60 1.88 46.47 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 22 C -0.15 -3.60 8.07 22.40 0.18 -3.42 16 23 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.08 0.86 8.09 -2.38 -0.02 0.84 16 25 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 26 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 27 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 2.06 8.09 -2.39 -0.02 2.04 16 30 H 0.06 2.32 7.46 -2.39 -0.02 2.30 16 31 H 0.08 1.75 7.98 -2.39 -0.02 1.73 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.04 0.86 7.32 -2.39 -0.02 0.84 16 34 H 0.09 2.47 7.89 -2.38 -0.02 2.45 16 35 H 0.07 1.70 6.78 -2.39 -0.02 1.68 16 36 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.03 1.15 7.45 -2.39 -0.02 1.14 16 38 H 0.01 0.33 7.20 -2.39 -0.02 0.32 16 39 H 0.00 -0.03 7.57 -2.39 -0.02 -0.05 16 40 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 41 H 0.13 2.57 7.02 -2.91 -0.02 2.55 16 Total: -1.00 -72.43 335.77 4.06 -68.37 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.93 Total: 12.52 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 5.08 Total: -28.96 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -2.30 Total: -78.28 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -1.53 Total: -20.12 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Total: -72.43 4.06 -68.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293559896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.658 kcal (2) G-P(sol) polarization free energy of solvation -72.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds