Wall clock time and date at job start Mon Mar 30 2020 06:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38304 * 119.92432 * 2 1 4 4 C 1.38082 * 120.07494 * 179.72277 * 3 2 1 5 5 C 1.38935 * 119.92272 * 359.97438 * 4 3 2 6 6 N 1.39667 * 120.07488 * 179.97438 * 5 4 3 7 7 C 1.46900 * 111.00191 * 296.04557 * 6 5 4 8 8 C 1.46901 * 111.00235 * 59.99791 * 6 5 4 9 9 C 1.53004 * 109.47132 * 75.95055 * 8 6 5 10 10 O 1.42906 * 109.46819 * 65.30519 * 9 8 6 11 11 C 1.42897 * 113.99850 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47156 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99642 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00111 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99921 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00039 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47019 * 59.99517 * 16 14 12 18 18 H 1.48493 * 109.47075 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46906 * 299.99525 * 16 14 12 20 20 C 1.38890 * 119.84985 * 359.97438 * 5 4 3 21 21 C 1.50709 * 120.03693 * 179.97438 * 20 5 4 22 22 C 1.38119 * 119.92732 * 0.02562 * 20 5 4 23 23 H 1.09003 * 109.47017 * 90.00067 * 1 2 3 24 24 H 1.08994 * 109.47679 * 209.99983 * 1 2 3 25 25 H 1.09005 * 109.47377 * 330.00401 * 1 2 3 26 26 H 1.07999 * 119.96552 * 359.74193 * 3 2 1 27 27 H 1.07991 * 120.03635 * 180.02562 * 4 3 2 28 28 H 1.08997 * 109.46802 * 55.41555 * 7 6 5 29 29 H 1.08996 * 109.47702 * 175.41581 * 7 6 5 30 30 H 1.09002 * 109.46831 * 295.42083 * 7 6 5 31 31 H 1.08997 * 109.47660 * 195.95360 * 8 6 5 32 32 H 1.09004 * 109.47184 * 315.95849 * 8 6 5 33 33 H 1.08998 * 109.46839 * 185.30185 * 9 8 6 34 34 H 1.08998 * 109.47383 * 305.30291 * 9 8 6 35 35 H 1.09000 * 109.47235 * 299.99929 * 11 10 9 36 36 H 1.08998 * 109.47031 * 59.99750 * 11 10 9 37 37 H 0.96998 * 119.99573 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.46436 * 90.00078 * 21 20 5 39 39 H 1.08993 * 109.47057 * 209.99977 * 21 20 5 40 40 H 1.09001 * 109.46885 * 330.00494 * 21 20 5 41 41 H 1.08002 * 119.96454 * 179.97438 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2023 0.0058 5 6 4.2740 0.0000 0.0121 6 7 5.6706 -0.0001 0.0175 7 6 6.2018 0.5983 -1.2145 8 6 6.1926 0.6893 1.2050 9 6 6.0438 -0.2179 2.4280 10 8 6.8754 -1.3694 2.2708 11 6 6.8100 -2.2872 3.3642 12 6 7.7205 -3.4571 3.0932 13 1 8.2923 -3.4956 2.1778 14 6 7.8236 -4.4781 4.0139 15 7 7.1276 -4.4310 5.1288 16 14 8.9517 -5.9286 3.6776 17 1 10.3468 -5.4446 3.5208 18 1 8.8838 -6.8823 4.8138 19 1 8.5216 -6.6116 2.4312 20 6 3.5779 -1.2019 0.0132 21 6 4.3288 -2.5086 0.0195 22 6 2.1967 -1.1983 0.0074 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6552 2.1329 -0.0042 27 1 4.1159 2.1386 0.0062 28 1 5.7880 1.5988 -1.3402 29 1 7.2881 0.6600 -1.1495 30 1 5.9234 -0.0199 -2.0680 31 1 7.2459 0.9260 1.0542 32 1 5.6326 1.6106 1.3658 33 1 6.3433 0.3271 3.3232 34 1 5.0042 -0.5309 2.5239 35 1 7.1250 -1.7854 4.2791 36 1 5.7862 -2.6430 3.4790 37 1 7.2005 -5.1492 5.7767 38 1 4.5063 -2.8206 1.0487 39 1 3.7400 -3.2685 -0.4941 40 1 5.2833 -2.3815 -0.4914 41 1 1.6549 -2.1326 0.0078 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293590151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:46 Heat of formation + Delta-G solvation = -24.191476 kcal Electronic energy + Delta-G solvation = -20060.516019 eV Core-core repulsion = 17133.219370 eV Total energy + Delta-G solvation = -2927.296649 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.02392 -37.24749 -35.93840 -32.90282 -32.62138 -31.34398 -29.52468 -27.09359 -26.84123 -26.55135 -24.09125 -22.63383 -22.13188 -21.07420 -19.78502 -16.73503 -16.31704 -15.72827 -15.60423 -15.28348 -14.79131 -14.30228 -13.94840 -13.82995 -13.64509 -13.57408 -12.92438 -12.80501 -12.71441 -12.40273 -12.13990 -12.02955 -11.72597 -11.59217 -11.29514 -11.15669 -10.98985 -10.86235 -10.78494 -10.66335 -10.38510 -9.95753 -9.02628 -8.72296 -8.61450 -8.26070 -8.12316 -8.04699 -6.04290 -4.05216 1.39152 1.53361 3.36231 3.38679 3.42799 3.79524 4.02546 4.40635 4.87833 4.90361 4.93802 5.05813 5.26920 5.32084 5.38408 5.40387 5.45406 5.51923 5.59725 5.69005 5.73082 5.82552 5.92368 5.96667 5.99255 6.12731 6.13282 6.16503 6.33724 6.36230 6.48510 6.66484 6.70742 6.93506 7.05179 7.14572 7.20913 7.52219 7.67312 7.87149 8.24570 8.70294 9.09717 9.59489 11.07324 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022907 B = 0.004774 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.057930 B = 5863.880054 C = 6355.728359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.125 4.125 4 C -0.145 4.145 5 C 0.087 3.913 6 N -0.492 5.492 7 C 0.033 3.967 8 C 0.064 3.936 9 C 0.071 3.929 10 O -0.379 6.379 11 C 0.196 3.804 12 C -0.509 4.509 13 H 0.066 0.934 14 C 0.056 3.944 15 N -0.900 5.900 16 Si 0.906 3.094 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.044 4.044 21 C -0.107 4.107 22 C -0.121 4.121 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.023 0.977 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.000 1.000 36 H 0.002 0.998 37 H 0.263 0.737 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.081 0.919 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.225 11.265 -11.329 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.166 4.166 5 C -0.007 4.007 6 N -0.213 5.213 7 C -0.114 4.114 8 C -0.062 4.062 9 C -0.008 4.008 10 O -0.298 6.298 11 C 0.122 3.878 12 C -0.547 4.547 13 H 0.084 0.916 14 C -0.145 4.145 15 N -0.540 5.540 16 Si 0.733 3.267 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.045 4.045 21 C -0.163 4.163 22 C -0.139 4.139 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.018 0.982 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.941 10.637 -11.302 18.431 hybrid contribution 0.089 0.192 0.295 0.363 sum -9.853 10.830 -11.007 18.317 Atomic orbital electron populations 1.20757 0.91500 1.02583 1.01957 1.19862 0.95800 0.93168 1.00328 1.20754 0.93722 0.97231 1.02669 1.21554 0.94866 0.97989 1.02147 1.18696 0.88902 0.92109 1.00980 1.59440 1.03993 1.55369 1.02451 1.22411 1.00384 0.96766 0.91815 1.22279 1.00277 0.93978 0.89700 1.22156 0.94809 0.89096 0.94714 1.87920 1.64485 1.31617 1.45798 1.20136 0.96263 0.87198 0.84252 1.21016 1.25144 1.03509 1.05076 0.91613 1.24932 0.96253 0.98446 0.94848 1.69962 1.41355 1.33587 1.09078 0.86431 0.80955 0.81582 0.77710 1.20094 1.21266 1.20017 1.19998 0.92857 0.95443 0.96224 1.20692 1.00137 0.91798 1.03698 1.20911 0.93419 0.97500 1.02117 0.91501 0.91600 0.91837 0.86651 0.86676 0.95855 0.90890 0.91456 0.89929 0.93818 0.94503 0.94710 0.98224 0.98017 0.92733 0.90122 0.92960 0.89980 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.01 0.36 -0.66 16 2 C -0.09 -1.13 5.88 -104.59 -0.62 -1.74 16 3 C -0.13 -1.52 9.69 -39.61 -0.38 -1.91 16 4 C -0.15 -1.93 8.31 -39.38 -0.33 -2.26 16 5 C 0.09 1.33 3.99 -83.79 -0.33 1.00 16 6 N -0.49 -7.76 3.58 -178.95 -0.64 -8.40 16 7 C 0.03 0.42 9.46 60.06 0.57 0.99 16 8 C 0.06 1.01 5.30 -3.82 -0.02 0.99 16 9 C 0.07 1.39 6.12 37.16 0.23 1.61 16 10 O -0.38 -9.31 10.28 -35.23 -0.36 -9.67 16 11 C 0.20 5.48 5.69 36.01 0.20 5.68 16 12 C -0.51 -15.14 9.43 -34.44 -0.32 -15.46 16 13 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 16 Si 0.91 22.09 29.54 -169.99 -5.02 17.07 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.04 -0.70 5.90 -104.42 -0.62 -1.31 16 21 C -0.11 -1.79 9.77 36.01 0.35 -1.44 16 22 C -0.12 -1.66 9.35 -39.62 -0.37 -2.03 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 25 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 27 H 0.12 1.36 7.05 -52.49 -0.37 0.99 16 28 H 0.02 0.26 7.21 -51.93 -0.37 -0.12 16 29 H 0.07 0.88 7.86 -51.93 -0.41 0.47 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.25 7.75 -51.93 -0.40 0.85 16 32 H 0.04 0.60 6.70 -51.93 -0.35 0.25 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.03 0.71 7.60 -51.93 -0.39 0.31 16 35 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 36 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 40 H 0.08 1.46 7.46 -51.93 -0.39 1.08 16 41 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -31.80 339.33 -8.42 -40.23 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -6.87 Total: -2.78 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -1.38 Total: -15.01 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.10 Total: -34.95 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.36 Total: -9.67 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.80 -8.42 -40.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293590151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.034 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds