Wall clock time and date at job start Mon Mar 30 2020 06:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38304 * 119.92432 * 2 1 4 4 C 1.38082 * 120.07494 * 179.72277 * 3 2 1 5 5 C 1.38935 * 119.92272 * 359.97438 * 4 3 2 6 6 N 1.39667 * 120.07488 * 179.97438 * 5 4 3 7 7 C 1.46900 * 111.00191 * 296.04557 * 6 5 4 8 8 C 1.46901 * 111.00235 * 59.99791 * 6 5 4 9 9 C 1.53004 * 109.47132 * 75.95055 * 8 6 5 10 10 O 1.42906 * 109.46819 * 65.30519 * 9 8 6 11 11 C 1.42897 * 113.99850 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47156 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99642 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00111 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99921 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00039 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47019 * 59.99517 * 16 14 12 18 18 H 1.48493 * 109.47075 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46906 * 299.99525 * 16 14 12 20 20 C 1.38890 * 119.84985 * 359.97438 * 5 4 3 21 21 C 1.50709 * 120.03693 * 179.97438 * 20 5 4 22 22 C 1.38119 * 119.92732 * 0.02562 * 20 5 4 23 23 H 1.09003 * 109.47017 * 90.00067 * 1 2 3 24 24 H 1.08994 * 109.47679 * 209.99983 * 1 2 3 25 25 H 1.09005 * 109.47377 * 330.00401 * 1 2 3 26 26 H 1.07999 * 119.96552 * 359.74193 * 3 2 1 27 27 H 1.07991 * 120.03635 * 180.02562 * 4 3 2 28 28 H 1.08997 * 109.46802 * 55.41555 * 7 6 5 29 29 H 1.08996 * 109.47702 * 175.41581 * 7 6 5 30 30 H 1.09002 * 109.46831 * 295.42083 * 7 6 5 31 31 H 1.08997 * 109.47660 * 195.95360 * 8 6 5 32 32 H 1.09004 * 109.47184 * 315.95849 * 8 6 5 33 33 H 1.08998 * 109.46839 * 185.30185 * 9 8 6 34 34 H 1.08998 * 109.47383 * 305.30291 * 9 8 6 35 35 H 1.09000 * 109.47235 * 299.99929 * 11 10 9 36 36 H 1.08998 * 109.47031 * 59.99750 * 11 10 9 37 37 H 0.96998 * 119.99573 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.46436 * 90.00078 * 21 20 5 39 39 H 1.08993 * 109.47057 * 209.99977 * 21 20 5 40 40 H 1.09001 * 109.46885 * 330.00494 * 21 20 5 41 41 H 1.08002 * 119.96454 * 179.97438 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2023 0.0058 5 6 4.2740 0.0000 0.0121 6 7 5.6706 -0.0001 0.0175 7 6 6.2018 0.5983 -1.2145 8 6 6.1926 0.6893 1.2050 9 6 6.0438 -0.2179 2.4280 10 8 6.8754 -1.3694 2.2708 11 6 6.8100 -2.2872 3.3642 12 6 7.7205 -3.4571 3.0932 13 1 8.2923 -3.4956 2.1778 14 6 7.8236 -4.4781 4.0139 15 7 7.1276 -4.4310 5.1288 16 14 8.9517 -5.9286 3.6776 17 1 10.3468 -5.4446 3.5208 18 1 8.8838 -6.8823 4.8138 19 1 8.5216 -6.6116 2.4312 20 6 3.5779 -1.2019 0.0132 21 6 4.3288 -2.5086 0.0195 22 6 2.1967 -1.1983 0.0074 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6552 2.1329 -0.0042 27 1 4.1159 2.1386 0.0062 28 1 5.7880 1.5988 -1.3402 29 1 7.2881 0.6600 -1.1495 30 1 5.9234 -0.0199 -2.0680 31 1 7.2459 0.9260 1.0542 32 1 5.6326 1.6106 1.3658 33 1 6.3433 0.3271 3.3232 34 1 5.0042 -0.5309 2.5239 35 1 7.1250 -1.7854 4.2791 36 1 5.7862 -2.6430 3.4790 37 1 7.2005 -5.1492 5.7767 38 1 4.5063 -2.8206 1.0487 39 1 3.7400 -3.2685 -0.4941 40 1 5.2833 -2.3815 -0.4914 41 1 1.6549 -2.1326 0.0078 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293590151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:45 Heat of formation + Delta-G solvation = -42.579060 kcal Electronic energy + Delta-G solvation = -20061.313364 eV Core-core repulsion = 17133.219370 eV Total energy + Delta-G solvation = -2928.093995 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.11283 -38.72894 -37.47963 -34.89450 -33.96489 -32.36304 -31.04661 -28.92829 -28.09592 -27.68362 -25.26767 -24.46452 -23.72540 -22.28622 -20.86751 -18.61945 -17.89986 -17.17633 -17.05016 -16.78780 -16.24966 -15.80853 -15.53198 -15.15202 -14.85703 -14.64184 -14.31583 -13.96526 -13.91686 -13.59262 -13.56857 -13.29344 -13.19652 -12.88381 -12.81094 -12.73979 -12.57424 -12.25793 -12.23339 -12.03181 -11.90404 -11.77744 -11.25370 -10.84195 -10.17633 -9.67009 -9.34915 -9.19612 -8.29727 -6.41743 0.36350 0.47735 1.40059 1.45195 1.53431 2.36094 2.74672 2.90559 3.03922 3.25362 3.92546 4.01326 4.03616 4.09816 4.19186 4.40553 4.43182 4.46616 4.54012 4.62469 4.63397 4.69888 4.79311 4.83157 4.85629 4.87755 4.91449 4.93768 4.99394 5.09294 5.17791 5.19958 5.41967 5.50673 5.57265 5.68047 5.72374 5.98636 6.00924 6.03062 6.53903 6.61132 6.87434 7.30340 8.82621 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022907 B = 0.004774 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.057930 B = 5863.880054 C = 6355.728359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.093 4.093 3 C -0.122 4.122 4 C -0.147 4.147 5 C 0.071 3.929 6 N -0.517 5.517 7 C 0.036 3.964 8 C 0.073 3.927 9 C 0.065 3.935 10 O -0.388 6.388 11 C 0.214 3.786 12 C -0.542 4.542 13 H 0.061 0.939 14 C 0.007 3.993 15 N -0.932 5.932 16 Si 0.982 3.018 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.266 1.266 20 C -0.075 4.075 21 C -0.094 4.094 22 C -0.130 4.130 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.146 0.854 27 H 0.134 0.866 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.021 0.979 35 H -0.020 1.020 36 H -0.024 1.024 37 H 0.270 0.730 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.792 12.247 -12.398 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.167 4.167 5 C -0.023 4.023 6 N -0.239 5.239 7 C -0.110 4.110 8 C -0.053 4.053 9 C -0.013 4.013 10 O -0.308 6.308 11 C 0.139 3.861 12 C -0.580 4.580 13 H 0.079 0.921 14 C -0.191 4.191 15 N -0.572 5.572 16 Si 0.804 3.196 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.191 1.191 20 C -0.076 4.076 21 C -0.151 4.151 22 C -0.149 4.149 23 H 0.100 0.900 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.163 0.837 27 H 0.152 0.848 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.040 0.960 35 H -0.002 1.002 36 H -0.006 1.006 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.517 11.645 -12.385 19.990 hybrid contribution 0.160 -0.034 0.624 0.645 sum -10.357 11.611 -11.761 19.504 Atomic orbital electron populations 1.20813 0.89068 1.03518 1.03187 1.20252 0.97607 0.92578 0.98881 1.21153 0.93490 0.98417 1.01005 1.21737 0.95547 0.97757 1.01696 1.18810 0.88779 0.92753 1.01929 1.59314 1.04757 1.56503 1.03305 1.22422 1.00618 0.97589 0.90397 1.22185 1.01281 0.93640 0.88174 1.22446 0.93268 0.88009 0.97563 1.87883 1.65611 1.32784 1.44491 1.19720 0.94404 0.87566 0.84453 1.21317 1.26170 1.04943 1.05522 0.92061 1.25945 0.97608 1.01371 0.94193 1.70078 1.42410 1.34773 1.09931 0.85261 0.78770 0.77434 0.78116 1.18933 1.19999 1.19058 1.20050 0.93901 0.94974 0.98677 1.20481 1.00019 0.93636 1.00960 1.21101 0.92756 0.98894 1.02103 0.89991 0.91317 0.90318 0.83674 0.84841 0.93826 0.90468 0.91595 0.89228 0.90968 0.93719 0.96023 1.00242 1.00604 0.92144 0.94217 0.91205 0.91700 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 10.01 71.24 0.71 -0.97 16 2 C -0.09 -2.10 5.88 -19.84 -0.12 -2.21 16 3 C -0.12 -2.63 9.69 22.25 0.22 -2.41 16 4 C -0.15 -3.60 8.31 22.40 0.19 -3.41 16 5 C 0.07 2.15 3.99 38.22 0.15 2.30 16 6 N -0.52 -16.22 3.58 -720.08 -2.57 -18.79 16 7 C 0.04 0.87 9.46 127.69 1.21 2.08 16 8 C 0.07 2.27 5.30 86.30 0.46 2.73 16 9 C 0.06 2.62 6.12 71.98 0.44 3.06 16 10 O -0.39 -19.90 10.28 -148.98 -1.53 -21.43 16 11 C 0.21 12.57 5.69 71.24 0.41 12.98 16 12 C -0.54 -33.24 9.43 25.60 0.24 -33.00 16 13 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 14 C 0.01 0.42 5.46 84.65 0.46 0.88 16 15 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 16 Si 0.98 45.38 29.54 68.60 2.03 47.41 16 17 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 C -0.08 -2.42 5.90 -19.73 -0.12 -2.53 16 21 C -0.09 -3.37 9.77 71.24 0.70 -2.67 16 22 C -0.13 -3.53 9.35 22.25 0.21 -3.32 16 23 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 25 H 0.08 0.99 8.08 -2.38 -0.02 0.97 16 26 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 27 H 0.13 2.70 7.05 -2.91 -0.02 2.68 16 28 H 0.04 0.87 7.21 -2.39 -0.02 0.85 16 29 H 0.08 1.76 7.86 -2.39 -0.02 1.75 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 2.62 7.75 -2.39 -0.02 2.61 16 32 H 0.07 1.82 6.70 -2.38 -0.02 1.80 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.02 0.92 7.60 -2.39 -0.02 0.90 16 35 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 36 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 37 H 0.27 15.44 8.31 -92.71 -0.77 14.66 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.07 2.12 8.08 -2.39 -0.02 2.10 16 40 H 0.06 2.47 7.46 -2.39 -0.02 2.45 16 41 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -70.45 339.33 4.34 -66.11 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.98 Total: 10.46 kcal Atomic # 6 Polarization: -31.68 SS G_CDS: 5.15 Total: -26.53 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -2.29 Total: -76.02 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -1.53 Total: -21.43 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -70.45 4.34 -66.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293590151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.533 kcal (2) G-P(sol) polarization free energy of solvation -70.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds