Wall clock time and date at job start Mon Mar 30 2020 06:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38259 * 119.99988 * 2 1 4 4 C 1.38205 * 120.00024 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99924 * 0.26898 * 4 3 2 6 6 C 1.38210 * 120.00162 * 359.51961 * 5 4 3 7 7 C 1.50700 * 120.00302 * 180.25281 * 6 5 4 8 8 N 1.46900 * 109.47148 * 270.21073 * 7 6 5 9 9 C 1.46890 * 111.00052 * 66.04492 * 8 7 6 10 10 C 1.46899 * 111.00025 * 190.00050 * 8 7 6 11 11 C 1.53000 * 109.47172 * 75.89049 * 10 8 7 12 12 O 1.42903 * 109.47216 * 64.41915 * 11 10 8 13 13 C 1.42900 * 114.00109 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47341 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99262 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99964 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99569 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 120.00286 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47098 * 89.99925 * 18 16 14 20 20 H 1.48493 * 109.47240 * 209.99703 * 18 16 14 21 21 H 1.48502 * 109.47005 * 330.00088 * 18 16 14 22 22 C 1.38208 * 119.99970 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.46552 * 90.00517 * 1 2 3 24 24 H 1.08997 * 109.46666 * 210.00488 * 1 2 3 25 25 H 1.08999 * 109.47039 * 330.00182 * 1 2 3 26 26 H 1.08001 * 119.99549 * 359.97438 * 3 2 1 27 27 H 1.07999 * 119.99977 * 180.02562 * 4 3 2 28 28 H 1.08007 * 119.99879 * 179.72431 * 5 4 3 29 29 H 1.09002 * 109.47070 * 30.20782 * 7 6 5 30 30 H 1.09006 * 109.47353 * 150.20823 * 7 6 5 31 31 H 1.08997 * 109.47306 * 54.62011 * 9 8 7 32 32 H 1.08999 * 109.47495 * 174.62938 * 9 8 7 33 33 H 1.09002 * 109.47057 * 294.62510 * 9 8 7 34 34 H 1.08998 * 109.46865 * 195.88750 * 10 8 7 35 35 H 1.09000 * 109.47190 * 315.88976 * 10 8 7 36 36 H 1.09007 * 109.47281 * 184.42069 * 11 10 8 37 37 H 1.09007 * 109.47473 * 304.42081 * 11 10 8 38 38 H 1.08999 * 109.47384 * 300.00342 * 13 12 11 39 39 H 1.09004 * 109.46973 * 60.00123 * 13 12 11 40 40 H 0.97000 * 120.00177 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.00112 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 -0.0046 6 6 3.5807 -1.1969 -0.0001 7 6 4.3342 -2.5021 0.0001 8 7 4.5792 -2.9262 -1.3848 9 6 5.4899 -1.9971 -2.0667 10 6 5.0974 -4.3001 -1.4308 11 6 3.9544 -5.2850 -1.1770 12 8 3.0013 -5.1923 -2.2377 13 6 1.8874 -6.0763 -2.0971 14 6 0.9513 -5.8944 -3.2641 15 1 1.1841 -5.1759 -4.0361 16 6 -0.2016 -6.6461 -3.3466 17 7 -1.0182 -6.4876 -4.3653 18 14 -0.6037 -7.8893 -2.0117 19 1 -1.4045 -7.2318 -0.9480 20 1 -1.3832 -9.0094 -2.5971 21 1 0.6569 -8.4149 -1.4289 22 6 2.1981 -1.1969 -0.0005 23 1 -0.3632 -0.0001 -1.0277 24 1 -0.3632 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6583 2.1326 -0.0004 27 1 4.1204 2.1327 0.0010 28 1 5.3518 0.0000 -0.0086 29 1 5.2866 -2.3717 0.5140 30 1 3.7451 -3.2617 0.5140 31 1 6.4060 -1.8938 -1.4852 32 1 5.7298 -2.3843 -3.0569 33 1 5.0097 -1.0234 -2.1640 34 1 5.5312 -4.4920 -2.4121 35 1 5.8622 -4.4257 -0.6644 36 1 4.3517 -6.2991 -1.1330 37 1 3.4698 -5.0433 -0.2309 38 1 2.2421 -7.1067 -2.0725 39 1 1.3598 -5.8514 -1.1701 40 1 -1.8295 -7.0161 -4.4233 41 1 1.6581 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293632179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:48 Heat of formation + Delta-G solvation = -21.279641 kcal Electronic energy + Delta-G solvation = -19679.616389 eV Core-core repulsion = 16752.446006 eV Total energy + Delta-G solvation = -2927.170383 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.56762 -37.68366 -36.13724 -32.88803 -32.52025 -31.48908 -29.63413 -27.50892 -26.99423 -26.70633 -23.83823 -22.00187 -21.76745 -21.10290 -20.10881 -16.80909 -16.44174 -15.97154 -15.74783 -15.33865 -15.05111 -14.70440 -14.19089 -14.14452 -13.83746 -13.55908 -13.02637 -12.76919 -12.63047 -12.45695 -12.24615 -12.13991 -11.84090 -11.73557 -11.60701 -11.36343 -10.91771 -10.83027 -10.81158 -10.64572 -10.36944 -9.81116 -9.10258 -8.77906 -8.68712 -8.53718 -8.37590 -8.05402 -6.06071 -4.04049 1.40921 1.51317 3.27318 3.34206 3.35850 3.72917 4.27300 4.39777 4.69733 4.79870 4.87346 4.96664 5.16859 5.25154 5.27224 5.34964 5.37095 5.44944 5.54713 5.57042 5.67253 5.73516 5.78154 5.79890 5.88697 5.93085 6.00245 6.06322 6.16433 6.21515 6.25422 6.51523 6.66506 6.67548 6.76936 7.06366 7.10434 7.22486 7.24218 7.66653 8.12764 8.75742 9.07755 9.53957 11.07201 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.005188 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.565873 B = 5395.316520 C = 6488.863310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.125 4.125 4 C -0.122 4.122 5 C -0.123 4.123 6 C -0.069 4.069 7 C 0.092 3.908 8 N -0.522 5.522 9 C 0.026 3.974 10 C 0.060 3.940 11 C 0.064 3.936 12 O -0.364 6.364 13 C 0.168 3.832 14 C -0.513 4.513 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.875 3.125 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.267 1.267 22 C -0.091 4.091 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.018 0.982 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.036 0.964 38 H -0.001 1.001 39 H -0.005 1.005 40 H 0.265 0.735 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.020 12.352 11.805 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.140 4.140 5 C -0.141 4.141 6 C -0.069 4.069 7 C -0.035 4.035 8 N -0.246 5.246 9 C -0.122 4.122 10 C -0.068 4.068 11 C -0.014 4.014 12 O -0.282 6.282 13 C 0.093 3.907 14 C -0.551 4.551 15 H 0.101 0.899 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.701 3.299 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.110 4.110 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.036 0.964 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.017 0.983 39 H 0.013 0.987 40 H 0.075 0.925 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.420 12.395 11.305 19.749 hybrid contribution 0.414 -0.888 1.243 1.583 sum 10.834 11.507 12.549 20.181 Atomic orbital electron populations 1.20809 0.91180 1.02486 1.02771 1.19951 0.96191 0.93088 0.99253 1.20978 0.94226 0.97356 1.01788 1.21005 0.94296 0.97617 1.01127 1.20965 0.99295 0.92170 1.01689 1.19699 0.93867 0.94209 0.99156 1.21116 0.98003 0.94413 0.89960 1.61822 1.46658 1.01670 1.14406 1.22437 0.93532 0.97558 0.98649 1.22167 0.95007 0.87878 1.01708 1.22324 0.91026 0.96315 0.91786 1.88014 1.33639 1.62984 1.43581 1.20571 0.84711 0.88328 0.97128 1.20902 1.03916 1.23101 1.07183 0.89942 1.24761 0.95719 0.96772 0.95733 1.69882 1.12548 1.41192 1.29967 0.86870 0.78904 0.81635 0.82446 1.20000 1.20861 1.19182 1.21028 0.93552 0.97939 0.98480 0.90798 0.91347 0.91922 0.86491 0.86490 0.86752 0.94469 0.89851 0.96355 0.91339 0.91196 0.89934 0.94029 0.94239 0.94629 0.98330 0.98696 0.92476 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 10.01 36.01 0.36 -0.99 16 2 C -0.08 -1.13 5.88 -104.62 -0.62 -1.75 16 3 C -0.13 -1.48 9.70 -39.59 -0.38 -1.87 16 4 C -0.12 -1.38 10.05 -39.59 -0.40 -1.78 16 5 C -0.12 -1.47 8.09 -39.58 -0.32 -1.79 16 6 C -0.07 -0.95 4.89 -104.62 -0.51 -1.46 16 7 C 0.09 1.24 4.94 -4.98 -0.02 1.22 16 8 N -0.52 -7.98 4.62 -244.38 -1.13 -9.11 16 9 C 0.03 0.34 9.00 60.06 0.54 0.88 16 10 C 0.06 0.88 5.39 -3.82 -0.02 0.86 16 11 C 0.06 1.14 6.13 37.16 0.23 1.36 16 12 O -0.36 -8.70 10.27 -35.23 -0.36 -9.06 16 13 C 0.17 4.37 4.76 36.01 0.17 4.54 16 14 C -0.51 -15.56 9.99 -34.44 -0.34 -15.91 16 15 H 0.08 2.76 8.06 -52.48 -0.42 2.33 16 16 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 17 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 18 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 22 C -0.09 -1.36 9.36 -39.58 -0.37 -1.73 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 25 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 28 H 0.11 1.16 8.02 -52.48 -0.42 0.74 16 29 H 0.04 0.43 8.01 -51.93 -0.42 0.02 16 30 H 0.08 1.15 6.53 -51.93 -0.34 0.81 16 31 H 0.02 0.20 8.07 -51.93 -0.42 -0.22 16 32 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 33 H 0.07 0.92 6.51 -51.93 -0.34 0.58 16 34 H 0.08 1.22 7.74 -51.93 -0.40 0.82 16 35 H 0.04 0.50 8.00 -51.93 -0.42 0.08 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.04 0.61 6.68 -51.93 -0.35 0.26 16 38 H 0.00 -0.02 7.20 -51.93 -0.37 -0.40 16 39 H 0.00 -0.12 7.57 -51.93 -0.39 -0.51 16 40 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 335.89 15.07 5.06 5.06 Total: -1.00 -33.04 335.89 -8.93 -41.97 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -6.82 Total: -2.22 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -1.79 Total: -16.36 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.36 Total: -36.39 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.36 Total: -9.06 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.04 -8.93 -41.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293632179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.690 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds