Wall clock time and date at job start Mon Mar 30 2020 06:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38259 * 119.99988 * 2 1 4 4 C 1.38205 * 120.00024 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99924 * 0.26898 * 4 3 2 6 6 C 1.38210 * 120.00162 * 359.51961 * 5 4 3 7 7 C 1.50700 * 120.00302 * 180.25281 * 6 5 4 8 8 N 1.46900 * 109.47148 * 270.21073 * 7 6 5 9 9 C 1.46890 * 111.00052 * 66.04492 * 8 7 6 10 10 C 1.46899 * 111.00025 * 190.00050 * 8 7 6 11 11 C 1.53000 * 109.47172 * 75.89049 * 10 8 7 12 12 O 1.42903 * 109.47216 * 64.41915 * 11 10 8 13 13 C 1.42900 * 114.00109 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47341 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99262 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99964 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99569 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 120.00286 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47098 * 89.99925 * 18 16 14 20 20 H 1.48493 * 109.47240 * 209.99703 * 18 16 14 21 21 H 1.48502 * 109.47005 * 330.00088 * 18 16 14 22 22 C 1.38208 * 119.99970 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.46552 * 90.00517 * 1 2 3 24 24 H 1.08997 * 109.46666 * 210.00488 * 1 2 3 25 25 H 1.08999 * 109.47039 * 330.00182 * 1 2 3 26 26 H 1.08001 * 119.99549 * 359.97438 * 3 2 1 27 27 H 1.07999 * 119.99977 * 180.02562 * 4 3 2 28 28 H 1.08007 * 119.99879 * 179.72431 * 5 4 3 29 29 H 1.09002 * 109.47070 * 30.20782 * 7 6 5 30 30 H 1.09006 * 109.47353 * 150.20823 * 7 6 5 31 31 H 1.08997 * 109.47306 * 54.62011 * 9 8 7 32 32 H 1.08999 * 109.47495 * 174.62938 * 9 8 7 33 33 H 1.09002 * 109.47057 * 294.62510 * 9 8 7 34 34 H 1.08998 * 109.46865 * 195.88750 * 10 8 7 35 35 H 1.09000 * 109.47190 * 315.88976 * 10 8 7 36 36 H 1.09007 * 109.47281 * 184.42069 * 11 10 8 37 37 H 1.09007 * 109.47473 * 304.42081 * 11 10 8 38 38 H 1.08999 * 109.47384 * 300.00342 * 13 12 11 39 39 H 1.09004 * 109.46973 * 60.00123 * 13 12 11 40 40 H 0.97000 * 120.00177 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.00112 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 -0.0046 6 6 3.5807 -1.1969 -0.0001 7 6 4.3342 -2.5021 0.0001 8 7 4.5792 -2.9262 -1.3848 9 6 5.4899 -1.9971 -2.0667 10 6 5.0974 -4.3001 -1.4308 11 6 3.9544 -5.2850 -1.1770 12 8 3.0013 -5.1923 -2.2377 13 6 1.8874 -6.0763 -2.0971 14 6 0.9513 -5.8944 -3.2641 15 1 1.1841 -5.1759 -4.0361 16 6 -0.2016 -6.6461 -3.3466 17 7 -1.0182 -6.4876 -4.3653 18 14 -0.6037 -7.8893 -2.0117 19 1 -1.4045 -7.2318 -0.9480 20 1 -1.3832 -9.0094 -2.5971 21 1 0.6569 -8.4149 -1.4289 22 6 2.1981 -1.1969 -0.0005 23 1 -0.3632 -0.0001 -1.0277 24 1 -0.3632 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6583 2.1326 -0.0004 27 1 4.1204 2.1327 0.0010 28 1 5.3518 0.0000 -0.0086 29 1 5.2866 -2.3717 0.5140 30 1 3.7451 -3.2617 0.5140 31 1 6.4060 -1.8938 -1.4852 32 1 5.7298 -2.3843 -3.0569 33 1 5.0097 -1.0234 -2.1640 34 1 5.5312 -4.4920 -2.4121 35 1 5.8622 -4.4257 -0.6644 36 1 4.3517 -6.2991 -1.1330 37 1 3.4698 -5.0433 -0.2309 38 1 2.2421 -7.1067 -2.0725 39 1 1.3598 -5.8514 -1.1701 40 1 -1.8295 -7.0161 -4.4233 41 1 1.6581 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293632179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:48 Heat of formation + Delta-G solvation = -42.830628 kcal Electronic energy + Delta-G solvation = -19680.550910 eV Core-core repulsion = 16752.446006 eV Total energy + Delta-G solvation = -2928.104903 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55176 -39.03901 -37.63594 -34.86299 -33.78834 -32.49306 -31.14435 -29.39730 -28.00935 -27.69222 -25.03226 -23.92776 -23.02123 -22.21108 -21.14767 -19.03617 -17.52645 -17.33480 -17.13805 -16.58478 -16.39264 -15.97314 -15.90329 -15.38893 -15.00286 -14.72285 -14.53454 -14.11484 -13.94119 -13.66257 -13.61692 -13.24496 -13.10949 -12.83918 -12.75920 -12.73090 -12.61557 -12.40502 -11.95712 -11.82977 -11.77951 -11.66667 -11.28234 -10.91383 -10.27990 -9.68464 -9.50335 -9.09450 -8.36339 -6.43641 0.44869 0.53129 1.31983 1.35411 1.46333 2.29487 2.73650 2.96036 3.14995 3.25037 3.79722 3.92999 4.09053 4.15499 4.24393 4.29520 4.31956 4.39544 4.51833 4.53418 4.60513 4.63227 4.64506 4.70791 4.75379 4.78726 4.88858 4.92381 5.00086 5.03341 5.06034 5.21165 5.31803 5.45798 5.58557 5.69396 5.78004 5.95327 6.13446 6.19549 6.21689 6.60521 6.83425 7.21115 8.81180 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.005188 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.565873 B = 5395.316520 C = 6488.863310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.101 4.101 3 C -0.130 4.130 4 C -0.120 4.120 5 C -0.123 4.123 6 C -0.081 4.081 7 C 0.096 3.904 8 N -0.556 5.556 9 C 0.031 3.969 10 C 0.066 3.934 11 C 0.053 3.947 12 O -0.393 6.393 13 C 0.181 3.819 14 C -0.541 4.541 15 H 0.026 0.974 16 C 0.013 3.987 17 N -0.943 5.943 18 Si 0.955 3.045 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.246 1.246 22 C -0.123 4.123 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.141 0.859 27 H 0.148 0.852 28 H 0.137 0.863 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.010 0.990 39 H 0.004 0.996 40 H 0.273 0.727 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.548 12.583 14.113 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.101 4.101 3 C -0.148 4.148 4 C -0.138 4.138 5 C -0.141 4.141 6 C -0.082 4.082 7 C -0.031 4.031 8 N -0.281 5.281 9 C -0.117 4.117 10 C -0.061 4.061 11 C -0.024 4.024 12 O -0.312 6.312 13 C 0.105 3.895 14 C -0.579 4.579 15 H 0.045 0.955 16 C -0.185 4.185 17 N -0.583 5.583 18 Si 0.777 3.223 19 H -0.185 1.185 20 H -0.197 1.197 21 H -0.169 1.169 22 C -0.142 4.142 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.105 0.895 26 H 0.159 0.841 27 H 0.166 0.834 28 H 0.155 0.845 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.028 0.972 39 H 0.022 0.978 40 H 0.082 0.918 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.974 12.642 13.615 22.104 hybrid contribution -0.020 -0.838 0.450 0.952 sum 11.954 11.804 14.066 21.910 Atomic orbital electron populations 1.20825 0.90598 1.03351 1.02416 1.20183 0.96960 0.93347 0.99594 1.21306 0.94910 0.97566 1.00983 1.21420 0.94231 0.98697 0.99407 1.21226 1.00448 0.91639 1.00834 1.19834 0.93447 0.95282 0.99614 1.21088 0.98845 0.93933 0.89197 1.61733 1.48204 1.02343 1.15795 1.22386 0.94110 0.96595 0.98593 1.22122 0.94268 0.87048 1.02700 1.22715 0.90741 0.98527 0.90392 1.87966 1.34114 1.62751 1.46410 1.20259 0.84929 0.89175 0.95174 1.21151 1.06119 1.22774 1.07877 0.95534 1.25835 0.94924 0.99022 0.98673 1.70042 1.13273 1.42568 1.32406 0.85610 0.79672 0.78345 0.78716 1.18520 1.19662 1.16907 1.21033 0.94541 0.97619 1.00994 0.91704 0.92072 0.89497 0.84111 0.83391 0.84498 0.91986 0.91065 0.93645 0.91966 0.91834 0.90401 0.90310 0.92449 0.93922 0.97222 0.97839 0.91845 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 10.01 71.24 0.71 -2.03 16 2 C -0.10 -2.71 5.88 -19.86 -0.12 -2.83 16 3 C -0.13 -2.86 9.70 22.27 0.22 -2.64 16 4 C -0.12 -2.39 10.05 22.27 0.22 -2.17 16 5 C -0.12 -2.69 8.09 22.27 0.18 -2.51 16 6 C -0.08 -2.20 4.89 -19.87 -0.10 -2.30 16 7 C 0.10 2.48 4.94 85.56 0.42 2.91 16 8 N -0.56 -16.53 4.62 -927.07 -4.28 -20.82 16 9 C 0.03 0.75 9.00 127.69 1.15 1.90 16 10 C 0.07 1.84 5.39 86.30 0.47 2.30 16 11 C 0.05 1.85 6.13 71.98 0.44 2.29 16 12 O -0.39 -19.16 10.27 -148.98 -1.53 -20.69 16 13 C 0.18 9.44 4.76 71.24 0.34 9.78 16 14 C -0.54 -34.20 9.99 25.60 0.26 -33.94 16 15 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 16 C 0.01 0.80 5.47 84.65 0.46 1.26 16 17 N -0.94 -60.74 13.96 21.45 0.30 -60.44 16 18 Si 0.96 44.43 27.47 68.60 1.88 46.31 16 19 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 22 C -0.12 -3.80 9.36 22.27 0.21 -3.59 16 23 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.06 1.49 8.09 -2.39 -0.02 1.47 16 25 H 0.09 1.58 8.09 -2.39 -0.02 1.56 16 26 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 27 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 28 H 0.14 2.31 8.02 -2.91 -0.02 2.29 16 29 H 0.06 1.26 8.01 -2.39 -0.02 1.24 16 30 H 0.07 1.96 6.53 -2.38 -0.02 1.94 16 31 H 0.05 0.85 8.07 -2.39 -0.02 0.83 16 32 H 0.06 1.55 7.84 -2.39 -0.02 1.53 16 33 H 0.06 1.60 6.51 -2.39 -0.02 1.59 16 34 H 0.08 2.22 7.74 -2.39 -0.02 2.20 16 35 H 0.08 1.62 8.00 -2.39 -0.02 1.60 16 36 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.04 1.41 6.68 -2.38 -0.02 1.40 16 38 H 0.01 0.50 7.20 -2.39 -0.02 0.48 16 39 H 0.00 0.20 7.57 -2.38 -0.02 0.18 16 40 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 41 H 0.10 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -74.81 335.89 2.16 -72.65 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.92 Total: 14.54 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 4.86 Total: -31.56 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -3.99 Total: -81.26 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -1.53 Total: -20.69 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Total: -74.81 2.16 -72.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293632179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.824 kcal (2) G-P(sol) polarization free energy of solvation -74.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds