Wall clock time and date at job start Mon Mar 30 2020 06:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38239 * 119.99781 * 2 1 4 4 C 1.38241 * 119.99700 * 180.02562 * 3 2 1 5 5 C 1.38235 * 120.00071 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00125 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47278 * 339.99972 * 6 5 4 8 8 C 1.52999 * 109.47017 * 100.00124 * 6 5 4 9 9 N 1.46905 * 109.47161 * 220.00049 * 6 5 4 10 10 C 1.46901 * 110.99870 * 155.00107 * 9 6 5 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 6 12 12 O 1.42897 * 109.46931 * 64.99951 * 11 10 9 13 13 C 1.42908 * 113.99340 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.46672 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00017 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99999 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99705 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00271 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47617 * 89.99709 * 18 16 14 20 20 H 1.48506 * 109.47116 * 209.99967 * 18 16 14 21 21 H 1.48504 * 109.47027 * 329.99471 * 18 16 14 22 22 C 1.38235 * 119.99806 * 0.25083 * 5 4 3 23 23 C 1.38235 * 119.99989 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.47040 * 89.99167 * 1 2 3 25 25 H 1.08997 * 109.46960 * 209.99988 * 1 2 3 26 26 H 1.09004 * 109.46521 * 329.99670 * 1 2 3 27 27 H 1.07990 * 120.00626 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.99777 * 179.97438 * 4 3 2 29 29 H 1.09006 * 109.47163 * 180.02562 * 8 6 5 30 30 H 1.08999 * 109.47123 * 299.99777 * 8 6 5 31 31 H 1.08997 * 109.47624 * 60.00343 * 8 6 5 32 32 H 1.00901 * 110.99869 * 31.04818 * 9 6 5 33 33 H 1.09004 * 109.47031 * 299.99620 * 10 9 6 34 34 H 1.08995 * 109.47111 * 59.99900 * 10 9 6 35 35 H 1.08996 * 109.46698 * 184.99715 * 11 10 9 36 36 H 1.09000 * 109.46869 * 304.99619 * 11 10 9 37 37 H 1.08993 * 109.47338 * 299.99632 * 13 12 11 38 38 H 1.08996 * 109.47019 * 60.00173 * 13 12 11 39 39 H 0.97000 * 119.99603 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.00005 * 179.72240 * 22 5 4 41 41 H 1.07991 * 120.00043 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2718 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 1 6.1419 0.9659 -0.3541 8 6 6.2898 -0.2512 1.4173 9 7 6.2677 -1.0606 -0.8939 10 6 7.6147 -0.7507 -1.3915 11 6 8.0886 -1.8751 -2.3145 12 8 7.2575 -1.9200 -3.4761 13 6 7.6173 -2.9411 -4.4089 14 6 6.6796 -2.8974 -5.5879 15 1 5.8884 -2.1631 -5.6216 16 6 6.8317 -3.7948 -6.6234 17 7 7.7949 -4.6894 -6.5820 18 14 5.6699 -3.7402 -8.0851 19 1 6.2209 -2.8309 -9.1218 20 1 5.5225 -5.1051 -8.6515 21 1 4.3425 -3.2414 -7.6439 22 6 3.5806 -1.1971 -0.0074 23 6 2.1982 -1.1972 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5139 27 1 1.6583 2.1325 0.0004 28 1 4.1206 2.1325 -0.0010 29 1 7.3799 -0.2507 1.4166 30 1 5.9270 0.5358 2.0785 31 1 5.9268 -1.2170 1.7686 32 1 5.6268 -1.2152 -1.6577 33 1 7.5903 0.1877 -1.9456 34 1 8.3006 -0.6578 -0.5495 35 1 9.1204 -1.6896 -2.6129 36 1 8.0284 -2.8274 -1.7875 37 1 8.6392 -2.7773 -4.7508 38 1 7.5476 -3.9156 -3.9256 39 1 7.9022 -5.3206 -7.3108 40 1 4.1205 -2.1324 -0.0128 41 1 1.6583 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293704748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:46 Heat of formation + Delta-G solvation = -40.740352 kcal Electronic energy + Delta-G solvation = -19180.215119 eV Core-core repulsion = 16252.200857 eV Total energy + Delta-G solvation = -2928.014262 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.65910 -37.33523 -36.03595 -33.09740 -32.48167 -30.90142 -30.51863 -27.87699 -26.87260 -26.30564 -22.82994 -22.53110 -22.24240 -21.12201 -20.12071 -16.75238 -16.26498 -15.95190 -15.54662 -15.15287 -15.06346 -14.49407 -14.31957 -13.99455 -13.80454 -13.57599 -13.35704 -13.14202 -12.49204 -12.35846 -12.28687 -12.06766 -11.85479 -11.55161 -11.46256 -11.20845 -10.92733 -10.85114 -10.71866 -10.70089 -10.44009 -9.99739 -9.09455 -8.88503 -8.81303 -8.49775 -8.22230 -8.15674 -6.09871 -4.11534 1.32228 1.44290 3.30799 3.35775 3.41259 3.74979 4.32700 4.36195 4.67173 4.81307 4.90805 4.95162 5.04980 5.20158 5.26662 5.35134 5.39586 5.47204 5.48347 5.56602 5.67514 5.71258 5.73414 5.79997 5.88239 6.05763 6.10230 6.11470 6.18923 6.30045 6.36087 6.43087 6.60161 6.63490 7.03374 7.12582 7.27547 7.45284 7.67403 7.80289 8.16627 8.59236 9.01792 9.53351 11.01694 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.004297 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.680773 B = 6514.723524 C = 7873.139146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.125 4.125 4 C -0.112 4.112 5 C -0.092 4.092 6 C 0.122 3.878 7 H 0.048 0.952 8 C -0.133 4.133 9 N -0.681 5.681 10 C 0.066 3.934 11 C 0.062 3.938 12 O -0.399 6.399 13 C 0.197 3.803 14 C -0.514 4.514 15 H 0.065 0.935 16 C 0.057 3.943 17 N -0.899 5.899 18 Si 0.907 3.093 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.092 4.092 23 C -0.121 4.121 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.358 0.642 33 H 0.034 0.966 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.004 0.996 38 H 0.006 0.994 39 H 0.264 0.736 40 H 0.133 0.867 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.603 10.323 16.293 21.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.130 4.130 5 C -0.092 4.092 6 C 0.012 3.988 7 H 0.066 0.934 8 C -0.191 4.191 9 N -0.315 5.315 10 C -0.064 4.064 11 C -0.016 4.016 12 O -0.319 6.319 13 C 0.123 3.877 14 C -0.553 4.553 15 H 0.083 0.917 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.734 3.266 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.110 4.110 23 C -0.139 4.139 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.179 0.821 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.021 0.979 38 H 0.024 0.976 39 H 0.073 0.927 40 H 0.151 0.849 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.444 9.894 16.659 21.136 hybrid contribution -0.373 0.430 -1.483 1.588 sum -8.817 10.324 15.176 20.363 Atomic orbital electron populations 1.20782 0.91473 1.02455 1.02301 1.19919 0.95928 0.93340 0.99971 1.20933 0.94043 0.97374 1.01912 1.20992 0.94178 0.97402 1.00434 1.19947 0.95131 0.93387 1.00745 1.20426 0.89741 0.93797 0.94800 0.93403 1.21770 1.00781 1.01897 0.94641 1.60624 1.04466 1.42568 1.23793 1.22004 0.90845 0.97051 0.96461 1.22288 0.93763 0.97588 0.87929 1.87795 1.55606 1.57864 1.30663 1.20169 0.95637 0.85209 0.86664 1.21057 1.14872 1.16711 1.02617 0.91652 1.24939 0.95935 0.95027 0.98551 1.69968 1.31709 1.19123 1.32979 0.86354 0.81017 0.77279 0.81948 1.20496 1.21051 1.19638 1.21116 0.93773 0.98386 0.97748 1.21077 0.94350 0.97453 1.01068 0.91207 0.91653 0.91824 0.86391 0.86389 0.92543 0.92884 0.91864 0.82129 0.94774 0.90652 0.94182 0.93547 0.97852 0.97617 0.92671 0.84923 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.01 0.36 -0.60 16 2 C -0.09 -1.02 5.88 -104.62 -0.62 -1.64 16 3 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 4 C -0.11 -1.31 9.67 -39.58 -0.38 -1.69 16 5 C -0.09 -1.17 4.72 -104.63 -0.49 -1.67 16 6 C 0.12 1.55 2.82 -68.86 -0.19 1.35 16 7 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 8 C -0.13 -1.46 9.39 37.16 0.35 -1.11 16 9 N -0.68 -10.30 5.69 -107.95 -0.61 -10.91 16 10 C 0.07 1.00 5.90 -3.82 -0.02 0.98 16 11 C 0.06 1.17 6.28 37.16 0.23 1.41 16 12 O -0.40 -9.66 9.85 -35.23 -0.35 -10.00 16 13 C 0.20 5.48 5.69 36.01 0.20 5.69 16 14 C -0.51 -15.30 9.43 -34.44 -0.32 -15.62 16 15 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 18 Si 0.91 22.04 29.54 -169.99 -5.02 17.02 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 22 C -0.09 -1.21 9.00 -39.58 -0.36 -1.56 16 23 C -0.12 -1.46 9.70 -39.58 -0.38 -1.85 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 26 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 27 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 28 H 0.12 1.18 8.04 -52.49 -0.42 0.76 16 29 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.36 6.21 7.54 -39.29 -0.30 5.92 16 33 H 0.03 0.53 8.06 -51.93 -0.42 0.12 16 34 H 0.08 0.98 7.44 -51.93 -0.39 0.59 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.13 1.78 7.71 -52.49 -0.40 1.37 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 342.63 15.07 5.16 5.16 Total: -1.00 -31.18 342.63 -9.09 -40.27 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.90 Total: 1.39 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -2.11 Total: -16.53 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.12 Total: -37.31 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.35 Total: -10.00 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.18 -9.09 -40.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293704748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.471 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds