Wall clock time and date at job start Mon Mar 30 2020 06:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38239 * 119.99781 * 2 1 4 4 C 1.38241 * 119.99700 * 180.02562 * 3 2 1 5 5 C 1.38235 * 120.00071 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00125 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47278 * 339.99972 * 6 5 4 8 8 C 1.52999 * 109.47017 * 100.00124 * 6 5 4 9 9 N 1.46905 * 109.47161 * 220.00049 * 6 5 4 10 10 C 1.46901 * 110.99870 * 155.00107 * 9 6 5 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 6 12 12 O 1.42897 * 109.46931 * 64.99951 * 11 10 9 13 13 C 1.42908 * 113.99340 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.46672 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00017 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99999 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99705 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00271 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47617 * 89.99709 * 18 16 14 20 20 H 1.48506 * 109.47116 * 209.99967 * 18 16 14 21 21 H 1.48504 * 109.47027 * 329.99471 * 18 16 14 22 22 C 1.38235 * 119.99806 * 0.25083 * 5 4 3 23 23 C 1.38235 * 119.99989 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.47040 * 89.99167 * 1 2 3 25 25 H 1.08997 * 109.46960 * 209.99988 * 1 2 3 26 26 H 1.09004 * 109.46521 * 329.99670 * 1 2 3 27 27 H 1.07990 * 120.00626 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.99777 * 179.97438 * 4 3 2 29 29 H 1.09006 * 109.47163 * 180.02562 * 8 6 5 30 30 H 1.08999 * 109.47123 * 299.99777 * 8 6 5 31 31 H 1.08997 * 109.47624 * 60.00343 * 8 6 5 32 32 H 1.00901 * 110.99869 * 31.04818 * 9 6 5 33 33 H 1.09004 * 109.47031 * 299.99620 * 10 9 6 34 34 H 1.08995 * 109.47111 * 59.99900 * 10 9 6 35 35 H 1.08996 * 109.46698 * 184.99715 * 11 10 9 36 36 H 1.09000 * 109.46869 * 304.99619 * 11 10 9 37 37 H 1.08993 * 109.47338 * 299.99632 * 13 12 11 38 38 H 1.08996 * 109.47019 * 60.00173 * 13 12 11 39 39 H 0.97000 * 119.99603 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.00005 * 179.72240 * 22 5 4 41 41 H 1.07991 * 120.00043 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2718 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 1 6.1419 0.9659 -0.3541 8 6 6.2898 -0.2512 1.4173 9 7 6.2677 -1.0606 -0.8939 10 6 7.6147 -0.7507 -1.3915 11 6 8.0886 -1.8751 -2.3145 12 8 7.2575 -1.9200 -3.4761 13 6 7.6173 -2.9411 -4.4089 14 6 6.6796 -2.8974 -5.5879 15 1 5.8884 -2.1631 -5.6216 16 6 6.8317 -3.7948 -6.6234 17 7 7.7949 -4.6894 -6.5820 18 14 5.6699 -3.7402 -8.0851 19 1 6.2209 -2.8309 -9.1218 20 1 5.5225 -5.1051 -8.6515 21 1 4.3425 -3.2414 -7.6439 22 6 3.5806 -1.1971 -0.0074 23 6 2.1982 -1.1972 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5139 27 1 1.6583 2.1325 0.0004 28 1 4.1206 2.1325 -0.0010 29 1 7.3799 -0.2507 1.4166 30 1 5.9270 0.5358 2.0785 31 1 5.9268 -1.2170 1.7686 32 1 5.6268 -1.2152 -1.6577 33 1 7.5903 0.1877 -1.9456 34 1 8.3006 -0.6578 -0.5495 35 1 9.1204 -1.6896 -2.6129 36 1 8.0284 -2.8274 -1.7875 37 1 8.6392 -2.7773 -4.7508 38 1 7.5476 -3.9156 -3.9256 39 1 7.9022 -5.3206 -7.3108 40 1 4.1205 -2.1324 -0.0128 41 1 1.6583 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293704748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:46 Heat of formation + Delta-G solvation = -59.278662 kcal Electronic energy + Delta-G solvation = -19181.019001 eV Core-core repulsion = 16252.200857 eV Total energy + Delta-G solvation = -2928.818144 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.57854 -38.90112 -37.39760 -34.99801 -33.84583 -31.80222 -31.60210 -29.62455 -28.24808 -27.44703 -24.54758 -23.74252 -23.51277 -22.35447 -21.06747 -18.67980 -17.72476 -17.37193 -16.94858 -16.60228 -16.22510 -16.08767 -15.57261 -15.20677 -15.06990 -14.69363 -14.43901 -14.23283 -13.89777 -13.59384 -13.38094 -13.11850 -12.98613 -12.92953 -12.78481 -12.62838 -12.62373 -12.28286 -12.25413 -11.89446 -11.76988 -11.54260 -11.28552 -10.88298 -10.24368 -9.79727 -9.40142 -9.38273 -8.33239 -6.45764 0.41995 0.53072 1.38775 1.41636 1.53679 2.33643 2.83618 3.00643 3.16770 3.23700 3.72369 3.97821 4.09880 4.18494 4.19515 4.29486 4.33371 4.49432 4.56914 4.57432 4.63992 4.77178 4.77837 4.84184 4.87237 4.91624 4.93679 4.99664 5.03563 5.17260 5.21845 5.30369 5.37305 5.52067 5.53410 5.66688 5.73158 5.94623 6.12309 6.18601 6.36474 6.52146 6.80559 7.26282 8.79210 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.004297 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.680773 B = 6514.723524 C = 7873.139146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.129 4.129 4 C -0.119 4.119 5 C -0.106 4.106 6 C 0.124 3.876 7 H 0.054 0.946 8 C -0.127 4.127 9 N -0.688 5.688 10 C 0.075 3.925 11 C 0.054 3.946 12 O -0.410 6.410 13 C 0.212 3.788 14 C -0.549 4.549 15 H 0.060 0.940 16 C 0.008 3.992 17 N -0.930 5.930 18 Si 0.982 3.018 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.265 1.265 22 C -0.110 4.110 23 C -0.135 4.135 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.142 0.858 28 H 0.135 0.865 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.342 0.658 33 H 0.033 0.967 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.043 0.957 37 H -0.015 1.015 38 H -0.016 1.016 39 H 0.271 0.729 40 H 0.119 0.881 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.852 11.665 16.389 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.106 4.106 6 C 0.014 3.986 7 H 0.072 0.928 8 C -0.185 4.185 9 N -0.320 5.320 10 C -0.054 4.054 11 C -0.023 4.023 12 O -0.330 6.330 13 C 0.137 3.863 14 C -0.586 4.586 15 H 0.079 0.921 16 C -0.191 4.191 17 N -0.570 5.570 18 Si 0.805 3.195 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.190 1.190 22 C -0.128 4.128 23 C -0.153 4.153 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.160 0.840 28 H 0.153 0.847 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.051 0.949 34 H 0.125 0.875 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.003 0.997 38 H 0.002 0.998 39 H 0.080 0.920 40 H 0.137 0.863 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.678 11.250 16.790 22.409 hybrid contribution 0.039 0.022 -1.425 1.426 sum -9.639 11.272 15.365 21.355 Atomic orbital electron populations 1.20828 0.89478 1.03689 1.02851 1.20285 0.97513 0.93007 0.98966 1.21283 0.94012 0.98384 1.01023 1.21249 0.94788 0.97608 1.00054 1.20030 0.95213 0.93776 1.01594 1.20497 0.89936 0.93124 0.94994 0.92842 1.21730 1.01122 1.01939 0.93712 1.60674 1.04015 1.44032 1.23258 1.21972 0.91667 0.95124 0.96598 1.22604 0.93856 0.99132 0.86675 1.87759 1.56913 1.56504 1.31803 1.19784 0.94381 0.85111 0.87026 1.21379 1.15592 1.17559 1.04086 0.92139 1.25948 0.97569 0.94048 1.01539 1.70073 1.33111 1.19564 1.34214 0.85198 0.78589 0.77973 0.77744 1.19213 1.19814 1.18970 1.21127 0.94464 0.98184 0.99034 1.21293 0.94129 0.98564 1.01353 0.90860 0.90881 0.90219 0.84005 0.84708 0.91858 0.91336 0.92818 0.83941 0.94921 0.87538 0.93253 0.93846 0.99678 0.99775 0.92012 0.86261 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 10.01 71.24 0.71 -0.95 16 2 C -0.10 -2.06 5.88 -19.86 -0.12 -2.17 16 3 C -0.13 -2.62 9.70 22.27 0.22 -2.41 16 4 C -0.12 -2.62 9.67 22.27 0.22 -2.40 16 5 C -0.11 -2.67 4.72 -19.87 -0.09 -2.76 16 6 C 0.12 3.03 2.82 44.17 0.12 3.15 16 7 H 0.05 1.25 7.66 -2.38 -0.02 1.24 16 8 C -0.13 -2.63 9.39 71.98 0.68 -1.95 16 9 N -0.69 -20.79 5.69 -495.43 -2.82 -23.61 16 10 C 0.08 2.25 5.90 86.30 0.51 2.76 16 11 C 0.05 2.07 6.28 71.98 0.45 2.53 16 12 O -0.41 -20.34 9.85 -148.98 -1.47 -21.80 16 13 C 0.21 12.19 5.69 71.24 0.41 12.59 16 14 C -0.55 -33.26 9.43 25.60 0.24 -33.02 16 15 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 16 C 0.01 0.44 5.46 84.65 0.46 0.90 16 17 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 18 Si 0.98 44.91 29.54 68.60 2.03 46.93 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 C -0.11 -2.93 9.00 22.27 0.20 -2.73 16 23 C -0.14 -3.24 9.70 22.27 0.22 -3.03 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 26 H 0.08 0.93 8.09 -2.38 -0.02 0.91 16 27 H 0.14 2.13 8.06 -2.92 -0.02 2.10 16 28 H 0.14 2.42 8.04 -2.91 -0.02 2.40 16 29 H 0.06 1.20 7.45 -2.38 -0.02 1.19 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.34 12.19 7.54 -89.69 -0.68 11.52 16 33 H 0.03 0.99 8.06 -2.39 -0.02 0.97 16 34 H 0.11 2.54 7.44 -2.39 -0.02 2.52 16 35 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 37 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 38 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 39 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.12 3.39 7.71 -2.91 -0.02 3.37 16 41 H 0.13 2.71 8.06 -2.92 -0.02 2.69 16 Total: -1.00 -67.20 342.63 2.56 -64.64 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.31 Total: 19.67 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 4.22 Total: -29.49 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -2.53 Total: -79.96 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -1.47 Total: -21.80 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -67.20 2.56 -64.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293704748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.365 kcal (2) G-P(sol) polarization free energy of solvation -67.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds