Wall clock time and date at job start Mon Mar 30 2020 06:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38232 * 120.00419 * 2 1 4 4 C 1.38230 * 120.00654 * 179.97438 * 3 2 1 5 5 C 1.38243 * 119.99664 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99971 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47247 * 20.00163 * 6 5 4 8 8 C 1.53006 * 109.46866 * 260.00332 * 6 5 4 9 9 N 1.46899 * 109.47244 * 140.00364 * 6 5 4 10 10 C 1.46898 * 110.99771 * 204.99835 * 9 6 5 11 11 C 1.52997 * 109.46667 * 179.97438 * 10 9 6 12 12 O 1.42900 * 109.47179 * 65.00189 * 11 10 9 13 13 C 1.42910 * 113.99736 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46773 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00001 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00040 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99891 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00034 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47370 * 90.00170 * 18 16 14 20 20 H 1.48500 * 109.46861 * 210.00008 * 18 16 14 21 21 H 1.48492 * 109.47207 * 329.99755 * 18 16 14 22 22 C 1.38230 * 119.99808 * 0.28295 * 5 4 3 23 23 C 1.38232 * 120.00229 * 359.50542 * 22 5 4 24 24 H 1.09005 * 109.47093 * 90.00155 * 1 2 3 25 25 H 1.09001 * 109.47527 * 209.99666 * 1 2 3 26 26 H 1.09000 * 109.47346 * 330.00250 * 1 2 3 27 27 H 1.08007 * 119.99582 * 359.97438 * 3 2 1 28 28 H 1.07992 * 120.00430 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47050 * 299.99952 * 8 6 5 30 30 H 1.09001 * 109.46801 * 60.00064 * 8 6 5 31 31 H 1.09001 * 109.46998 * 179.97438 * 8 6 5 32 32 H 1.00901 * 110.99931 * 328.95368 * 9 6 5 33 33 H 1.08993 * 109.47394 * 299.99882 * 10 9 6 34 34 H 1.09003 * 109.47121 * 60.00162 * 10 9 6 35 35 H 1.09004 * 109.47146 * 185.00242 * 11 10 9 36 36 H 1.08999 * 109.47561 * 304.99895 * 11 10 9 37 37 H 1.08998 * 109.47058 * 299.99487 * 13 12 11 38 38 H 1.08999 * 109.47306 * 60.00022 * 13 12 11 39 39 H 0.96999 * 119.99969 * 179.97438 * 17 16 14 40 40 H 1.08007 * 119.99998 * 179.72867 * 22 5 4 41 41 H 1.08002 * 120.00625 * 180.27581 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 -0.0001 0.0028 7 1 6.1418 0.9657 0.3541 8 6 6.2897 -0.2512 -1.4174 9 7 6.2677 -1.0607 0.8938 10 6 7.6146 -0.7508 1.3914 11 6 8.0886 -1.8753 2.3142 12 8 8.2320 -3.0811 1.5610 13 6 8.6735 -4.1997 2.3331 14 6 8.7887 -5.4103 1.4430 15 1 8.5492 -5.3331 0.3927 16 6 9.2009 -6.6162 1.9692 17 7 9.4931 -6.7101 3.2482 18 14 9.3445 -8.1166 0.8658 19 1 10.7134 -8.1813 0.2938 20 1 9.0819 -9.3428 1.6612 21 1 8.3523 -8.0185 -0.2346 22 6 3.5805 -1.1972 -0.0038 23 6 2.1982 -1.1972 0.0001 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1323 0.0010 29 1 5.9266 -1.2170 -1.7688 30 1 5.9269 0.5358 -2.0785 31 1 7.3798 -0.2507 -1.4167 32 1 5.6267 -1.2154 1.6576 33 1 8.3005 -0.6579 0.5494 34 1 7.5903 0.1876 1.9455 35 1 9.0489 -1.6047 2.7532 36 1 7.3565 -2.0273 3.1074 37 1 9.6461 -3.9771 2.7720 38 1 7.9539 -4.4000 3.1269 39 1 9.7827 -7.5585 3.6185 40 1 4.1205 -2.1325 -0.0074 41 1 1.6581 -2.1325 0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293704750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:49 Heat of formation + Delta-G solvation = -37.163983 kcal Electronic energy + Delta-G solvation = -19084.486359 eV Core-core repulsion = 16156.627180 eV Total energy + Delta-G solvation = -2927.859179 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.71621 -37.30160 -36.02332 -33.12145 -32.47291 -30.95886 -30.53083 -27.86258 -26.84660 -26.27371 -22.87545 -22.53299 -22.19598 -21.21849 -20.16462 -16.76216 -16.23506 -15.94820 -15.65733 -15.21252 -14.82907 -14.62130 -14.15312 -14.08426 -13.80175 -13.55770 -13.40247 -13.06173 -12.56978 -12.43181 -12.31250 -12.04880 -11.88579 -11.53300 -11.42425 -11.22240 -10.98167 -10.79148 -10.76943 -10.57146 -10.39956 -9.93933 -9.03398 -8.95148 -8.75323 -8.56055 -8.18139 -8.07857 -6.05526 -4.06317 1.25361 1.37755 3.34142 3.38848 3.45038 3.68481 4.27275 4.40207 4.62801 4.74657 4.85268 4.95797 4.99578 5.14029 5.30964 5.31525 5.37576 5.41199 5.43964 5.63129 5.64067 5.69554 5.71394 5.81578 5.93565 6.02126 6.06448 6.08698 6.14174 6.33065 6.37506 6.42196 6.54522 6.59335 6.97727 7.16271 7.26602 7.49649 7.59882 7.86533 8.22851 8.67893 9.08634 9.58395 11.06224 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022227 B = 0.003570 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.439036 B = 7841.396173 C = 8474.656586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.125 4.125 4 C -0.113 4.113 5 C -0.092 4.092 6 C 0.125 3.875 7 H 0.045 0.955 8 C -0.134 4.134 9 N -0.669 5.669 10 C 0.065 3.935 11 C 0.065 3.935 12 O -0.380 6.380 13 C 0.194 3.806 14 C -0.509 4.509 15 H 0.067 0.933 16 C 0.054 3.946 17 N -0.901 5.901 18 Si 0.907 3.093 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.271 1.271 22 C -0.092 4.092 23 C -0.122 4.122 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.341 0.659 33 H 0.079 0.921 34 H 0.033 0.967 35 H 0.040 0.960 36 H 0.033 0.967 37 H 0.002 0.998 38 H 0.003 0.997 39 H 0.263 0.737 40 H 0.137 0.863 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.124 17.034 -5.504 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.143 4.143 4 C -0.132 4.132 5 C -0.093 4.093 6 C 0.015 3.985 7 H 0.063 0.937 8 C -0.192 4.192 9 N -0.301 5.301 10 C -0.064 4.064 11 C -0.013 4.013 12 O -0.299 6.299 13 C 0.119 3.881 14 C -0.548 4.548 15 H 0.085 0.915 16 C -0.146 4.146 17 N -0.541 5.541 18 Si 0.734 3.266 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.196 1.196 22 C -0.111 4.111 23 C -0.140 4.140 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.020 0.980 38 H 0.021 0.979 39 H 0.072 0.928 40 H 0.154 0.846 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.861 16.488 -6.077 22.381 hybrid contribution 0.043 -0.105 0.594 0.605 sum -13.818 16.383 -5.483 22.123 Atomic orbital electron populations 1.20780 0.91474 1.02616 1.02146 1.19927 0.95921 0.93344 1.00059 1.20927 0.94035 0.97348 1.02035 1.20993 0.94155 0.97385 1.00618 1.19990 0.95207 0.93340 1.00729 1.20436 0.89520 0.93270 0.95260 0.93678 1.21769 1.01193 1.01981 0.94227 1.60462 1.03445 1.43183 1.23016 1.22034 0.90816 0.95048 0.98498 1.22222 0.98100 0.87511 0.93446 1.87957 1.88288 1.17378 1.36279 1.20180 0.93123 0.83063 0.91718 1.21072 1.44612 0.92857 0.96233 0.91506 1.24953 0.95374 0.98996 0.95300 1.69971 1.46052 1.26064 1.11969 0.86346 0.78538 0.81413 0.80255 1.20535 1.21155 1.19592 1.21209 0.93764 0.98649 0.97437 1.21108 0.94383 0.97459 1.01037 0.91349 0.91568 0.91787 0.86427 0.86412 0.91559 0.93060 0.92235 0.84013 0.90296 0.94906 0.94231 0.94835 0.98049 0.97926 0.92762 0.84551 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.09 -0.95 5.88 -104.62 -0.62 -1.56 16 3 C -0.13 -1.26 9.70 -39.59 -0.38 -1.64 16 4 C -0.11 -1.21 9.67 -39.58 -0.38 -1.59 16 5 C -0.09 -1.12 4.71 -104.62 -0.49 -1.61 16 6 C 0.12 1.56 2.82 -68.86 -0.19 1.37 16 7 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 8 C -0.13 -1.68 9.39 37.16 0.35 -1.33 16 9 N -0.67 -9.99 5.65 -107.95 -0.61 -10.60 16 10 C 0.07 0.99 5.87 -3.83 -0.02 0.96 16 11 C 0.07 1.23 6.22 37.16 0.23 1.46 16 12 O -0.38 -9.37 10.27 -35.23 -0.36 -9.73 16 13 C 0.19 5.44 5.69 36.01 0.20 5.64 16 14 C -0.51 -15.34 9.43 -34.44 -0.32 -15.66 16 15 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 18 Si 0.91 22.24 29.54 -169.99 -5.02 17.22 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.09 -1.17 9.01 -39.59 -0.36 -1.53 16 23 C -0.12 -1.38 9.70 -39.58 -0.38 -1.77 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 26 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 28 H 0.12 1.05 8.04 -52.49 -0.42 0.63 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.76 7.45 -51.93 -0.39 0.38 16 32 H 0.34 4.99 8.00 -39.29 -0.31 4.67 16 33 H 0.08 1.23 7.44 -51.93 -0.39 0.84 16 34 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 38 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.14 1.89 7.73 -52.48 -0.41 1.48 16 41 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 343.40 15.07 5.17 5.17 Total: -1.00 -32.02 343.40 -9.11 -41.13 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.92 Total: -0.26 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -2.11 Total: -16.25 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.13 Total: -37.29 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.36 Total: -9.73 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.02 -9.11 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293704750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.970 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds