Wall clock time and date at job start Mon Mar 30 2020 06:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38232 * 120.00419 * 2 1 4 4 C 1.38230 * 120.00654 * 179.97438 * 3 2 1 5 5 C 1.38243 * 119.99664 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99971 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47247 * 20.00163 * 6 5 4 8 8 C 1.53006 * 109.46866 * 260.00332 * 6 5 4 9 9 N 1.46899 * 109.47244 * 140.00364 * 6 5 4 10 10 C 1.46898 * 110.99771 * 204.99835 * 9 6 5 11 11 C 1.52997 * 109.46667 * 179.97438 * 10 9 6 12 12 O 1.42900 * 109.47179 * 65.00189 * 11 10 9 13 13 C 1.42910 * 113.99736 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46773 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00001 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00040 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99891 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00034 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47370 * 90.00170 * 18 16 14 20 20 H 1.48500 * 109.46861 * 210.00008 * 18 16 14 21 21 H 1.48492 * 109.47207 * 329.99755 * 18 16 14 22 22 C 1.38230 * 119.99808 * 0.28295 * 5 4 3 23 23 C 1.38232 * 120.00229 * 359.50542 * 22 5 4 24 24 H 1.09005 * 109.47093 * 90.00155 * 1 2 3 25 25 H 1.09001 * 109.47527 * 209.99666 * 1 2 3 26 26 H 1.09000 * 109.47346 * 330.00250 * 1 2 3 27 27 H 1.08007 * 119.99582 * 359.97438 * 3 2 1 28 28 H 1.07992 * 120.00430 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47050 * 299.99952 * 8 6 5 30 30 H 1.09001 * 109.46801 * 60.00064 * 8 6 5 31 31 H 1.09001 * 109.46998 * 179.97438 * 8 6 5 32 32 H 1.00901 * 110.99931 * 328.95368 * 9 6 5 33 33 H 1.08993 * 109.47394 * 299.99882 * 10 9 6 34 34 H 1.09003 * 109.47121 * 60.00162 * 10 9 6 35 35 H 1.09004 * 109.47146 * 185.00242 * 11 10 9 36 36 H 1.08999 * 109.47561 * 304.99895 * 11 10 9 37 37 H 1.08998 * 109.47058 * 299.99487 * 13 12 11 38 38 H 1.08999 * 109.47306 * 60.00022 * 13 12 11 39 39 H 0.96999 * 119.99969 * 179.97438 * 17 16 14 40 40 H 1.08007 * 119.99998 * 179.72867 * 22 5 4 41 41 H 1.08002 * 120.00625 * 180.27581 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 -0.0001 0.0028 7 1 6.1418 0.9657 0.3541 8 6 6.2897 -0.2512 -1.4174 9 7 6.2677 -1.0607 0.8938 10 6 7.6146 -0.7508 1.3914 11 6 8.0886 -1.8753 2.3142 12 8 8.2320 -3.0811 1.5610 13 6 8.6735 -4.1997 2.3331 14 6 8.7887 -5.4103 1.4430 15 1 8.5492 -5.3331 0.3927 16 6 9.2009 -6.6162 1.9692 17 7 9.4931 -6.7101 3.2482 18 14 9.3445 -8.1166 0.8658 19 1 10.7134 -8.1813 0.2938 20 1 9.0819 -9.3428 1.6612 21 1 8.3523 -8.0185 -0.2346 22 6 3.5805 -1.1972 -0.0038 23 6 2.1982 -1.1972 0.0001 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1323 0.0010 29 1 5.9266 -1.2170 -1.7688 30 1 5.9269 0.5358 -2.0785 31 1 7.3798 -0.2507 -1.4167 32 1 5.6267 -1.2154 1.6576 33 1 8.3005 -0.6579 0.5494 34 1 7.5903 0.1876 1.9455 35 1 9.0489 -1.6047 2.7532 36 1 7.3565 -2.0273 3.1074 37 1 9.6461 -3.9771 2.7720 38 1 7.9539 -4.4000 3.1269 39 1 9.7827 -7.5585 3.6185 40 1 4.1205 -2.1325 -0.0074 41 1 1.6581 -2.1325 0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293704750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:48 Heat of formation + Delta-G solvation = -56.705198 kcal Electronic energy + Delta-G solvation = -19085.333730 eV Core-core repulsion = 16156.627180 eV Total energy + Delta-G solvation = -2928.706550 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.58499 -38.82710 -37.41521 -34.97503 -33.86509 -31.79862 -31.60859 -29.63978 -28.18979 -27.44743 -24.49010 -23.74101 -23.53563 -22.40855 -21.07800 -18.65329 -17.72836 -17.35584 -17.02670 -16.41690 -16.27982 -16.01835 -15.46367 -15.16245 -15.05683 -14.69354 -14.39548 -14.22662 -13.99467 -13.69506 -13.38816 -13.14946 -12.99362 -12.85003 -12.81655 -12.65316 -12.53597 -12.33556 -12.21926 -11.84975 -11.71887 -11.54965 -11.25405 -10.85518 -10.18418 -9.79869 -9.39348 -9.28358 -8.31504 -6.43365 0.41458 0.53006 1.39588 1.42707 1.55033 2.35577 2.83277 3.02055 3.16174 3.27740 3.73105 3.98206 4.10244 4.17416 4.20343 4.27276 4.33369 4.49561 4.56588 4.57964 4.63427 4.67109 4.78772 4.84604 4.87193 4.91952 4.93127 5.01886 5.03532 5.19654 5.22437 5.30420 5.37712 5.52876 5.56256 5.67980 5.73773 5.98219 6.13359 6.20471 6.44833 6.58519 6.87255 7.28917 8.80978 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022227 B = 0.003570 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.439036 B = 7841.396173 C = 8474.656586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 C -0.127 4.127 4 C -0.114 4.114 5 C -0.103 4.103 6 C 0.129 3.871 7 H 0.063 0.937 8 C -0.131 4.131 9 N -0.689 5.689 10 C 0.075 3.925 11 C 0.055 3.945 12 O -0.395 6.395 13 C 0.209 3.791 14 C -0.545 4.545 15 H 0.059 0.941 16 C 0.005 3.995 17 N -0.932 5.932 18 Si 0.983 3.017 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.266 1.266 22 C -0.111 4.111 23 C -0.135 4.135 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.144 0.856 28 H 0.139 0.861 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.340 0.660 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.037 0.963 37 H -0.016 1.016 38 H -0.018 1.018 39 H 0.271 0.729 40 H 0.113 0.887 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.111 18.180 -6.267 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.133 4.133 5 C -0.104 4.104 6 C 0.020 3.980 7 H 0.081 0.919 8 C -0.189 4.189 9 N -0.322 5.322 10 C -0.053 4.053 11 C -0.022 4.022 12 O -0.315 6.315 13 C 0.134 3.866 14 C -0.583 4.583 15 H 0.077 0.923 16 C -0.193 4.193 17 N -0.571 5.571 18 Si 0.806 3.194 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.190 1.190 22 C -0.129 4.129 23 C -0.153 4.153 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.162 0.838 28 H 0.157 0.843 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.159 0.841 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.002 0.998 38 H 0.000 1.000 39 H 0.079 0.921 40 H 0.131 0.869 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.853 17.662 -6.838 24.069 hybrid contribution 0.299 -0.372 0.872 0.994 sum -14.554 17.289 -5.966 23.374 Atomic orbital electron populations 1.20829 0.89494 1.03534 1.03026 1.20275 0.97468 0.92952 0.98906 1.21286 0.93989 0.98313 1.00882 1.21246 0.94703 0.97489 0.99813 1.19978 0.94880 0.93738 1.01768 1.20434 0.89990 0.93136 0.94421 0.91889 1.21748 1.00731 1.01513 0.94892 1.60416 1.03382 1.44993 1.23427 1.21936 0.90843 0.94594 0.97972 1.22587 0.98942 0.86314 0.94356 1.87915 1.88117 1.18419 1.37041 1.19790 0.91559 0.84181 0.91100 1.21383 1.46218 0.94450 0.96249 0.92251 1.25967 0.94122 1.02246 0.96955 1.70074 1.45899 1.27400 1.13755 0.85185 0.79075 0.76964 0.78200 1.19197 1.19805 1.19004 1.21117 0.94491 0.98177 0.99153 1.21270 0.94001 0.98586 1.01490 0.90377 0.91270 0.90310 0.83809 0.84321 0.93747 0.91060 0.92830 0.84095 0.90721 0.91399 0.93336 0.94495 0.99846 1.00018 0.92066 0.86921 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.01 71.23 0.71 -0.73 16 2 C -0.10 -1.81 5.88 -19.87 -0.12 -1.93 16 3 C -0.13 -2.22 9.70 22.27 0.22 -2.00 16 4 C -0.11 -2.19 9.67 22.27 0.22 -1.97 16 5 C -0.10 -2.42 4.71 -19.87 -0.09 -2.52 16 6 C 0.13 3.12 2.82 44.17 0.12 3.24 16 7 H 0.06 1.31 7.66 -2.39 -0.02 1.29 16 8 C -0.13 -3.23 9.39 71.98 0.68 -2.56 16 9 N -0.69 -20.62 5.65 -495.46 -2.80 -23.42 16 10 C 0.08 2.23 5.87 86.30 0.51 2.73 16 11 C 0.06 2.10 6.22 71.98 0.45 2.55 16 12 O -0.40 -20.13 10.27 -148.98 -1.53 -21.66 16 13 C 0.21 12.18 5.69 71.24 0.41 12.59 16 14 C -0.55 -33.65 9.43 25.60 0.24 -33.41 16 15 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 16 C 0.01 0.31 5.46 84.65 0.46 0.77 16 17 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 18 Si 0.98 45.56 29.54 68.60 2.03 47.59 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 C -0.11 -2.88 9.01 22.27 0.20 -2.68 16 23 C -0.14 -3.06 9.70 22.27 0.22 -2.84 16 24 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 25 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 26 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 27 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 28 H 0.14 2.02 8.04 -2.91 -0.02 2.00 16 29 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.36 7.45 -2.39 -0.02 1.34 16 32 H 0.34 10.11 8.00 -89.69 -0.72 9.39 16 33 H 0.07 2.28 7.44 -2.39 -0.02 2.26 16 34 H 0.07 1.56 8.06 -2.39 -0.02 1.54 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 38 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 39 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 40 H 0.11 3.38 7.73 -2.91 -0.02 3.36 16 41 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -69.67 343.40 2.47 -67.20 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.27 Total: 16.03 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 4.21 Total: -28.76 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -2.51 Total: -80.41 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -1.53 Total: -21.66 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -69.67 2.47 -67.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293704750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.499 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds