Wall clock time and date at job start Mon Mar 30 2020 07:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47206 * 179.97438 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47168 * 10.26207 * 4 3 2 6 6 C 1.52996 * 109.47131 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47188 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 5 10 10 C 1.46507 * 120.00105 * 179.97438 * 9 7 6 11 11 H 1.09005 * 110.01264 * 325.69623 * 10 9 7 12 12 C 1.53870 * 110.03181 * 87.08856 * 10 9 7 13 13 C 1.54265 * 106.59902 * 119.28862 * 12 10 9 14 14 C 1.54891 * 104.19841 * 23.60510 * 13 12 10 15 15 H 1.09001 * 110.75581 * 80.55726 * 14 13 12 16 16 C 1.50698 * 110.75837 * 203.74548 * 14 13 12 17 17 H 1.08001 * 119.99645 * 118.54905 * 16 14 13 18 18 C 1.37872 * 120.00121 * 298.54674 * 16 14 13 19 19 N 1.31512 * 119.99811 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00148 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47308 * 89.99664 * 20 18 16 22 22 H 1.48503 * 109.47058 * 210.00047 * 20 18 16 23 23 H 1.48502 * 109.46589 * 329.99432 * 20 18 16 24 24 C 1.54270 * 110.03091 * 204.30903 * 10 9 7 25 25 H 1.09001 * 109.47046 * 229.74167 * 1 2 3 26 26 H 1.08996 * 109.47170 * 349.73467 * 1 2 3 27 27 H 1.08992 * 109.47449 * 109.74243 * 1 2 3 28 28 H 1.09001 * 109.47046 * 130.25833 * 4 3 2 29 29 H 1.08996 * 109.47366 * 250.26237 * 4 3 2 30 30 H 1.09001 * 109.47289 * 300.00032 * 5 4 3 31 31 H 1.09004 * 109.47261 * 59.99776 * 5 4 3 32 32 H 1.09001 * 109.46997 * 299.99574 * 6 5 4 33 33 H 1.08996 * 109.47452 * 60.00000 * 6 5 4 34 34 H 0.97005 * 120.00406 * 359.97438 * 9 7 6 35 35 H 1.09006 * 110.03138 * 238.56724 * 12 10 9 36 36 H 1.08992 * 110.03353 * 359.95435 * 12 10 9 37 37 H 1.08997 * 110.49285 * 142.28790 * 13 12 10 38 38 H 1.09002 * 110.48732 * 264.80065 * 13 12 10 39 39 H 0.97003 * 119.99690 * 180.02562 * 19 18 16 40 40 H 1.08995 * 110.48466 * 335.77911 * 24 10 9 41 41 H 1.08996 * 110.48668 * 98.42550 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6293 -1.4171 -0.2570 6 6 6.1593 -1.4158 -0.2563 7 6 6.6629 -2.8133 -0.5101 8 8 5.8756 -3.7211 -0.6747 9 7 7.9882 -3.0546 -0.5530 10 6 8.4778 -4.4134 -0.7992 11 1 7.8047 -5.1405 -0.3448 12 6 8.5856 -4.6687 -2.3127 13 6 10.0690 -4.9770 -2.6030 14 6 10.6243 -5.4818 -1.2481 15 1 10.3672 -6.5294 -1.0915 16 6 12.1165 -5.2836 -1.1753 17 1 12.5398 -4.6449 -0.4142 18 6 12.9411 -5.9177 -2.0802 19 7 12.4256 -6.6958 -3.0066 20 14 14.7908 -5.6725 -1.9895 21 1 15.3840 -6.7051 -1.1024 22 1 15.3736 -5.7945 -3.3499 23 1 15.0850 -4.3229 -1.4442 24 6 9.8989 -4.5757 -0.2213 25 1 -0.3633 -0.6641 0.7843 26 1 -0.3633 1.0112 0.1831 27 1 -0.3634 -0.3471 -0.9672 28 1 4.4808 0.6663 -0.7843 29 1 4.4811 0.3492 0.9672 30 1 4.2666 -2.0816 0.5272 31 1 4.2663 -1.7645 -1.2243 32 1 6.5224 -0.7513 -1.0404 33 1 6.5220 -1.0686 0.7111 34 1 8.6179 -2.3287 -0.4210 35 1 7.9655 -5.5203 -2.5928 36 1 8.2729 -3.7820 -2.8641 37 1 10.1557 -5.7528 -3.3637 38 1 10.5915 -4.0741 -2.9191 39 1 13.0058 -7.1422 -3.6430 40 1 10.3946 -3.6076 -0.1501 41 1 9.8609 -5.0587 0.7550 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295470590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:59 Heat of formation + Delta-G solvation = -28.325631 kcal Electronic energy + Delta-G solvation = -18781.908186 eV Core-core repulsion = 15854.432267 eV Total energy + Delta-G solvation = -2927.475920 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.65717 -37.19595 -35.77128 -33.63044 -33.42598 -31.96342 -29.84823 -28.16558 -27.40636 -26.20007 -23.88018 -22.35311 -20.31762 -19.57080 -19.04512 -17.26793 -16.57534 -16.27825 -16.00646 -15.28202 -14.78590 -14.48429 -14.21714 -14.03809 -13.96297 -13.67350 -13.43278 -12.73876 -12.50794 -12.44955 -12.29569 -11.78781 -11.64923 -11.11713 -11.04946 -10.97705 -10.92232 -10.59520 -10.30491 -9.98063 -9.93304 -9.87568 -9.53070 -9.50831 -9.20173 -8.81344 -8.57726 -8.37462 -6.01438 -4.05153 2.50650 2.54579 2.88272 3.29427 3.36519 3.38511 3.50466 4.05584 4.42727 4.76108 4.84867 4.90422 5.21841 5.22843 5.30587 5.32310 5.37182 5.38492 5.44534 5.48388 5.61239 5.67770 5.77348 5.84038 5.98369 6.15529 6.33120 6.37142 6.60540 6.67158 6.75253 6.90855 6.94681 7.26797 7.33701 7.48199 7.71695 7.83928 7.88683 8.02295 8.41790 8.51997 8.96984 9.59055 11.07640 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.059809 B = 0.002707 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.040690 B =10342.818643 C =10536.880677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.201 4.201 3 C -0.182 4.182 4 C -0.007 4.007 5 C -0.098 4.098 6 C -0.142 4.142 7 C 0.506 3.494 8 O -0.548 6.548 9 N -0.719 5.719 10 C 0.137 3.863 11 H 0.078 0.922 12 C -0.134 4.134 13 C -0.100 4.100 14 C 0.051 3.949 15 H 0.032 0.968 16 C -0.515 4.515 17 H 0.055 0.945 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.121 4.121 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.397 0.603 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.260 0.740 40 H 0.061 0.939 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.576 13.786 5.303 21.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.201 4.201 3 C -0.182 4.182 4 C -0.044 4.044 5 C -0.136 4.136 6 C -0.182 4.182 7 C 0.292 3.708 8 O -0.426 6.426 9 N -0.370 5.370 10 C 0.033 3.967 11 H 0.097 0.903 12 C -0.173 4.173 13 C -0.138 4.138 14 C 0.032 3.968 15 H 0.050 0.950 16 C -0.553 4.553 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.526 5.526 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.159 4.159 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.232 0.768 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.088 13.001 5.028 21.287 hybrid contribution 1.379 0.467 -0.024 1.456 sum -14.709 13.468 5.004 20.562 Atomic orbital electron populations 1.18830 0.84790 1.02799 1.03037 1.22414 0.93989 1.01603 1.02097 1.22360 0.93689 1.01154 1.01015 1.18729 0.84409 0.98241 1.03019 1.21267 0.93165 0.95165 1.04035 1.21688 0.97189 0.95215 1.04132 1.20621 0.82706 0.90821 0.76633 1.90689 1.55453 1.46557 1.49852 1.46383 1.06576 1.11743 1.72281 1.21860 0.96326 0.81975 0.96506 0.90337 1.22646 1.00088 1.00090 0.94489 1.22300 0.90151 1.00328 1.01025 1.19565 0.94020 0.93957 0.89225 0.95010 1.21092 0.91039 1.28552 1.14599 0.92657 1.24984 0.98499 0.95066 0.95419 1.69962 1.34899 1.30316 1.17470 0.86633 0.85865 0.78478 0.77216 1.20741 1.21309 1.19987 1.22767 0.92432 1.01224 0.99487 0.90286 0.90399 0.90270 0.89567 0.89591 0.90841 0.90798 0.88821 0.88859 0.76845 0.92671 0.93273 0.91265 0.93531 0.93055 0.92076 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.26 10.32 34.37 0.35 0.10 16 2 C -0.20 -2.14 14.13 -37.12 -0.52 -2.66 16 3 C -0.18 -2.01 13.34 -37.12 -0.50 -2.51 16 4 C -0.01 -0.06 5.70 -29.52 -0.17 -0.23 16 5 C -0.10 -1.03 4.46 -26.73 -0.12 -1.15 16 6 C -0.14 -1.37 5.70 -27.89 -0.16 -1.53 16 7 C 0.51 7.42 7.82 -10.99 -0.09 7.33 16 8 O -0.55 -10.35 15.65 5.56 0.09 -10.26 16 9 N -0.72 -10.56 4.99 -52.72 -0.26 -10.82 16 10 C 0.14 2.49 3.23 -66.81 -0.22 2.28 16 11 H 0.08 1.53 7.59 -51.93 -0.39 1.13 16 12 C -0.13 -2.64 6.59 -25.62 -0.17 -2.81 16 13 C -0.10 -2.30 5.57 -25.07 -0.14 -2.44 16 14 C 0.05 1.24 2.82 -89.74 -0.25 0.98 16 15 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 16 C -0.51 -13.75 8.54 -34.44 -0.29 -14.04 16 17 H 0.06 1.45 7.78 -52.49 -0.41 1.04 16 18 C 0.06 1.70 5.33 -17.82 -0.10 1.60 16 19 N -0.89 -25.26 12.02 55.43 0.67 -24.59 16 20 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.12 -2.37 5.95 -25.03 -0.15 -2.52 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 31 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.40 4.77 8.35 -40.82 -0.34 4.43 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.92 7.92 -51.93 -0.41 0.50 16 37 H 0.07 1.75 7.37 -51.93 -0.38 1.37 16 38 H 0.05 1.09 8.04 -51.93 -0.42 0.68 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.06 1.14 7.63 -51.93 -0.40 0.74 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -31.68 343.65 -8.82 -40.50 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.95 Total: 1.68 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -2.51 Total: -17.61 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.40 Total: -35.42 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.68 -8.82 -40.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295470590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.172 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds