Wall clock time and date at job start Mon Mar 30 2020 07:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47206 * 179.97438 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47168 * 10.26207 * 4 3 2 6 6 C 1.52996 * 109.47131 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47188 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 5 10 10 C 1.46507 * 120.00105 * 179.97438 * 9 7 6 11 11 H 1.09005 * 110.01264 * 325.69623 * 10 9 7 12 12 C 1.53870 * 110.03181 * 87.08856 * 10 9 7 13 13 C 1.54265 * 106.59902 * 119.28862 * 12 10 9 14 14 C 1.54891 * 104.19841 * 23.60510 * 13 12 10 15 15 H 1.09001 * 110.75581 * 80.55726 * 14 13 12 16 16 C 1.50698 * 110.75837 * 203.74548 * 14 13 12 17 17 H 1.08001 * 119.99645 * 118.54905 * 16 14 13 18 18 C 1.37872 * 120.00121 * 298.54674 * 16 14 13 19 19 N 1.31512 * 119.99811 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00148 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47308 * 89.99664 * 20 18 16 22 22 H 1.48503 * 109.47058 * 210.00047 * 20 18 16 23 23 H 1.48502 * 109.46589 * 329.99432 * 20 18 16 24 24 C 1.54270 * 110.03091 * 204.30903 * 10 9 7 25 25 H 1.09001 * 109.47046 * 229.74167 * 1 2 3 26 26 H 1.08996 * 109.47170 * 349.73467 * 1 2 3 27 27 H 1.08992 * 109.47449 * 109.74243 * 1 2 3 28 28 H 1.09001 * 109.47046 * 130.25833 * 4 3 2 29 29 H 1.08996 * 109.47366 * 250.26237 * 4 3 2 30 30 H 1.09001 * 109.47289 * 300.00032 * 5 4 3 31 31 H 1.09004 * 109.47261 * 59.99776 * 5 4 3 32 32 H 1.09001 * 109.46997 * 299.99574 * 6 5 4 33 33 H 1.08996 * 109.47452 * 60.00000 * 6 5 4 34 34 H 0.97005 * 120.00406 * 359.97438 * 9 7 6 35 35 H 1.09006 * 110.03138 * 238.56724 * 12 10 9 36 36 H 1.08992 * 110.03353 * 359.95435 * 12 10 9 37 37 H 1.08997 * 110.49285 * 142.28790 * 13 12 10 38 38 H 1.09002 * 110.48732 * 264.80065 * 13 12 10 39 39 H 0.97003 * 119.99690 * 180.02562 * 19 18 16 40 40 H 1.08995 * 110.48466 * 335.77911 * 24 10 9 41 41 H 1.08996 * 110.48668 * 98.42550 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6293 -1.4171 -0.2570 6 6 6.1593 -1.4158 -0.2563 7 6 6.6629 -2.8133 -0.5101 8 8 5.8756 -3.7211 -0.6747 9 7 7.9882 -3.0546 -0.5530 10 6 8.4778 -4.4134 -0.7992 11 1 7.8047 -5.1405 -0.3448 12 6 8.5856 -4.6687 -2.3127 13 6 10.0690 -4.9770 -2.6030 14 6 10.6243 -5.4818 -1.2481 15 1 10.3672 -6.5294 -1.0915 16 6 12.1165 -5.2836 -1.1753 17 1 12.5398 -4.6449 -0.4142 18 6 12.9411 -5.9177 -2.0802 19 7 12.4256 -6.6958 -3.0066 20 14 14.7908 -5.6725 -1.9895 21 1 15.3840 -6.7051 -1.1024 22 1 15.3736 -5.7945 -3.3499 23 1 15.0850 -4.3229 -1.4442 24 6 9.8989 -4.5757 -0.2213 25 1 -0.3633 -0.6641 0.7843 26 1 -0.3633 1.0112 0.1831 27 1 -0.3634 -0.3471 -0.9672 28 1 4.4808 0.6663 -0.7843 29 1 4.4811 0.3492 0.9672 30 1 4.2666 -2.0816 0.5272 31 1 4.2663 -1.7645 -1.2243 32 1 6.5224 -0.7513 -1.0404 33 1 6.5220 -1.0686 0.7111 34 1 8.6179 -2.3287 -0.4210 35 1 7.9655 -5.5203 -2.5928 36 1 8.2729 -3.7820 -2.8641 37 1 10.1557 -5.7528 -3.3637 38 1 10.5915 -4.0741 -2.9191 39 1 13.0058 -7.1422 -3.6430 40 1 10.3946 -3.6076 -0.1501 41 1 9.8609 -5.0587 0.7550 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295470590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:59 Heat of formation + Delta-G solvation = -46.366143 kcal Electronic energy + Delta-G solvation = -18782.690482 eV Core-core repulsion = 15854.432267 eV Total energy + Delta-G solvation = -2928.258215 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.92367 -38.75999 -36.58715 -35.26228 -34.21439 -33.70861 -30.67118 -29.93633 -28.76678 -27.22578 -25.72482 -23.30560 -21.63715 -21.07220 -20.72245 -18.47612 -18.25770 -17.28306 -16.93387 -16.66697 -16.53126 -16.06635 -15.29831 -15.11307 -14.68408 -14.48071 -14.34474 -14.21104 -13.98730 -13.68294 -13.28011 -13.24203 -12.99601 -12.78878 -12.53662 -12.47677 -12.37893 -12.09264 -11.83023 -11.65707 -11.38161 -11.09289 -10.82464 -10.79959 -10.60005 -10.56234 -10.45851 -9.94298 -8.09179 -6.19864 1.43854 1.44680 1.54476 1.73045 1.74541 1.79329 2.34985 2.46577 3.21625 3.40464 3.78688 3.97658 4.02903 4.11954 4.15089 4.21892 4.51977 4.67715 4.69157 4.73604 4.77650 4.80848 4.82411 4.86351 4.89441 4.93630 5.04192 5.07015 5.16058 5.16665 5.22951 5.30834 5.36258 5.42466 5.67069 5.71563 5.94313 6.00264 6.37743 6.70527 6.74379 6.91201 7.38909 7.48139 8.99287 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.059809 B = 0.002707 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.040690 B =10342.818643 C =10536.880677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.221 4.221 3 C -0.215 4.215 4 C -0.002 4.002 5 C -0.093 4.093 6 C -0.129 4.129 7 C 0.502 3.498 8 O -0.596 6.596 9 N -0.710 5.710 10 C 0.149 3.851 11 H 0.065 0.935 12 C -0.124 4.124 13 C -0.089 4.089 14 C 0.038 3.962 15 H -0.003 1.003 16 C -0.527 4.527 17 H 0.061 0.939 18 C 0.008 3.992 19 N -0.922 5.922 20 Si 0.955 3.045 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.263 1.263 24 C -0.106 4.106 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.415 0.585 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.040 0.960 39 H 0.259 0.741 40 H 0.077 0.923 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.394 16.484 6.373 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.221 4.221 3 C -0.215 4.215 4 C -0.038 4.038 5 C -0.131 4.131 6 C -0.168 4.168 7 C 0.291 3.709 8 O -0.477 6.477 9 N -0.362 5.362 10 C 0.044 3.956 11 H 0.083 0.917 12 C -0.163 4.163 13 C -0.127 4.127 14 C 0.019 3.981 15 H 0.015 0.985 16 C -0.566 4.566 17 H 0.079 0.921 18 C -0.190 4.190 19 N -0.561 5.561 20 Si 0.781 3.219 21 H -0.205 1.205 22 H -0.214 1.214 23 H -0.187 1.187 24 C -0.144 4.144 25 H 0.107 0.893 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.252 0.748 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.897 15.741 6.118 23.193 hybrid contribution 1.265 -0.416 -0.360 1.379 sum -14.632 15.325 5.759 21.958 Atomic orbital electron populations 1.19049 0.82734 1.04199 1.03926 1.23425 0.95495 1.01164 1.01971 1.23142 0.94997 1.01846 1.01522 1.18797 0.83105 0.97034 1.04882 1.21163 0.93945 0.96098 1.01930 1.21711 0.96119 0.91979 1.07014 1.21541 0.81936 0.92405 0.75067 1.90680 1.56540 1.48585 1.51850 1.46193 1.07276 1.10628 1.72094 1.21427 0.95351 0.83975 0.94846 0.91689 1.22523 0.97359 1.00365 0.96067 1.22067 0.92399 0.98744 0.99505 1.19562 0.93817 0.93130 0.91553 0.98491 1.21488 0.92407 1.28253 1.14409 0.92111 1.25811 1.03060 0.94932 0.95209 1.70111 1.36359 1.31352 1.18270 0.85598 0.80406 0.78842 0.77046 1.20456 1.21381 1.18699 1.22565 0.92581 1.00893 0.98363 0.89301 0.88655 0.89359 0.87604 0.87434 0.92995 0.93212 0.85770 0.85448 0.74795 0.93574 0.91823 0.94535 0.94137 0.93235 0.90423 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.52 10.32 70.18 0.72 0.20 16 2 C -0.22 -4.52 14.13 31.13 0.44 -4.08 16 3 C -0.22 -4.53 13.34 31.13 0.42 -4.12 16 4 C 0.00 -0.03 5.70 28.79 0.16 0.14 16 5 C -0.09 -1.81 4.46 30.59 0.14 -1.68 16 6 C -0.13 -2.04 5.70 29.85 0.17 -1.87 16 7 C 0.50 13.69 7.82 87.66 0.69 14.38 16 8 O -0.60 -22.32 15.65 -3.04 -0.05 -22.37 16 9 N -0.71 -19.08 4.99 -439.09 -2.19 -21.27 16 10 C 0.15 5.29 3.23 45.71 0.15 5.44 16 11 H 0.06 2.52 7.59 -2.38 -0.02 2.50 16 12 C -0.12 -4.88 6.59 31.32 0.21 -4.68 16 13 C -0.09 -4.17 5.57 31.67 0.18 -3.99 16 14 C 0.04 1.88 2.82 -10.22 -0.03 1.85 16 15 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 16 C -0.53 -28.17 8.54 25.60 0.22 -27.95 16 17 H 0.06 3.11 7.78 -2.91 -0.02 3.08 16 18 C 0.01 0.46 5.33 84.65 0.45 0.91 16 19 N -0.92 -53.67 12.02 21.45 0.26 -53.41 16 20 Si 0.96 42.89 29.54 68.60 2.03 44.91 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 23 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 24 C -0.11 -4.03 5.95 31.70 0.19 -3.84 16 25 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 31 H 0.05 1.19 8.10 -2.38 -0.02 1.17 16 32 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.41 8.38 8.35 -92.70 -0.77 7.61 16 35 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.06 2.30 7.92 -2.39 -0.02 2.28 16 37 H 0.04 1.92 7.37 -2.39 -0.02 1.90 16 38 H 0.04 1.91 8.04 -2.39 -0.02 1.89 16 39 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 40 H 0.08 2.70 7.63 -2.39 -0.02 2.68 16 41 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -71.00 343.65 4.37 -66.63 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.23 Total: 14.80 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 4.10 Total: -29.30 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -1.93 Total: -74.68 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.05 Total: -22.37 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -71.00 4.37 -66.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295470590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.264 kcal (2) G-P(sol) polarization free energy of solvation -71.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds