Wall clock time and date at job start Mon Mar 30 2020 06:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34507 * 125.79153 * 2 1 4 4 C 1.41378 * 106.84171 * 180.02562 * 3 2 1 5 5 C 1.34505 * 106.84391 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.79358 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.47031 * 19.99554 * 6 5 4 8 8 C 1.52994 * 109.46840 * 259.99471 * 6 5 4 9 9 N 1.46900 * 109.47283 * 139.99402 * 6 5 4 10 10 C 1.46894 * 111.00104 * 205.00048 * 9 6 5 11 11 H 1.09001 * 110.01706 * 326.39066 * 10 9 6 12 12 C 1.53871 * 110.03518 * 87.83339 * 10 9 6 13 13 C 1.54269 * 106.59813 * 119.28416 * 12 10 9 14 14 C 1.54885 * 104.19677 * 23.61322 * 13 12 10 15 15 H 1.09002 * 110.75709 * 80.37016 * 14 13 12 16 16 C 1.50697 * 110.91369 * 203.67045 * 14 13 12 17 17 H 1.07991 * 120.00281 * 115.95471 * 16 14 13 18 18 C 1.37879 * 119.99754 * 295.94927 * 16 14 13 19 19 N 1.31512 * 120.00423 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99968 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47155 * 60.00064 * 20 18 16 22 22 H 1.48499 * 109.47271 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47236 * 300.00283 * 20 18 16 24 24 C 1.54271 * 110.03313 * 205.00093 * 10 9 6 25 25 O 1.34302 * 125.78607 * 180.34339 * 2 1 3 26 26 H 1.08998 * 109.46891 * 89.99854 * 1 2 3 27 27 H 1.09003 * 109.47069 * 209.99887 * 1 2 3 28 28 H 1.08997 * 109.47066 * 330.00018 * 1 2 3 29 29 H 1.08005 * 126.57844 * 0.02562 * 3 2 1 30 30 H 1.08006 * 126.57527 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47460 * 299.99448 * 8 6 5 32 32 H 1.09000 * 109.47425 * 59.99911 * 8 6 5 33 33 H 1.09003 * 109.46864 * 179.97438 * 8 6 5 34 34 H 1.00905 * 111.00198 * 81.04448 * 9 6 5 35 35 H 1.09000 * 110.03307 * 238.57168 * 12 10 9 36 36 H 1.08999 * 110.03179 * 359.95556 * 12 10 9 37 37 H 1.09002 * 110.48538 * 264.93327 * 13 12 10 38 38 H 1.08996 * 110.48433 * 142.29362 * 13 12 10 39 39 H 0.96996 * 120.00433 * 179.97438 * 19 18 16 40 40 H 1.09002 * 110.48367 * 98.42726 * 24 10 9 41 41 H 1.09003 * 110.48661 * 335.78146 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6319 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6379 -0.0019 7 1 5.6504 -1.0993 0.3501 8 6 5.0193 -2.1480 -1.4227 9 7 4.5051 -2.7765 0.8877 10 6 5.7584 -3.3600 1.3842 11 1 6.5343 -3.2809 0.6227 12 6 6.2035 -2.6384 2.6683 13 6 6.2388 -3.7042 3.7831 14 6 6.4162 -5.0424 3.0236 15 1 7.4597 -5.1945 2.7475 16 6 5.9095 -6.1990 3.8462 17 1 5.0675 -6.7798 3.5001 18 6 6.5211 -6.5156 5.0406 19 7 7.5464 -5.8081 5.4624 20 14 5.8935 -7.9498 6.0599 21 1 5.9886 -9.2008 5.2655 22 1 6.7155 -8.0802 7.2898 23 1 4.4771 -7.7081 6.4351 24 6 5.5389 -4.8391 1.7635 25 8 2.2924 -1.0894 -0.0065 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.9666 2.1204 0.0004 30 1 4.5212 1.2433 -0.0004 31 1 4.1395 -2.6867 -1.7746 32 1 5.2163 -1.3032 -2.0827 33 1 5.8797 -2.8172 -1.4230 34 1 3.9404 -3.4729 0.4249 35 1 7.1959 -2.2090 2.5306 36 1 5.4899 -1.8547 2.9226 37 1 5.3026 -3.7036 4.3413 38 1 7.0824 -3.5298 4.4509 39 1 7.9764 -6.0306 6.3028 40 1 5.8718 -5.4930 0.9574 41 1 4.4897 -5.0218 1.9956 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296516304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:17 Heat of formation + Delta-G solvation = -5.835415 kcal Electronic energy + Delta-G solvation = -19806.441227 eV Core-core repulsion = 16879.940557 eV Total energy + Delta-G solvation = -2926.500671 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.47769 -38.11108 -35.38910 -33.08024 -32.52635 -31.51530 -29.51196 -28.05849 -26.55471 -25.93109 -23.64700 -22.22073 -21.66497 -19.97128 -19.28200 -18.84014 -16.63801 -16.39839 -16.05401 -15.30280 -14.87360 -14.60555 -14.22199 -13.88794 -13.32507 -13.19034 -13.03483 -12.92077 -12.71101 -12.44989 -12.19240 -12.09795 -11.82448 -11.46708 -11.37553 -10.95331 -10.75588 -10.51347 -10.50050 -10.00451 -9.90024 -9.77754 -9.42013 -9.08963 -8.73042 -8.30462 -8.23275 -8.05222 -5.94680 -3.97081 1.81691 2.67518 3.00132 3.36075 3.40500 3.43292 4.32509 4.49812 4.68495 4.89782 5.04678 5.08559 5.17811 5.31373 5.32048 5.37424 5.53140 5.56352 5.60274 5.66350 5.76719 5.89598 5.94849 5.98261 6.08950 6.23725 6.36707 6.52113 6.60176 6.68769 6.81847 6.92510 7.04358 7.17440 7.31580 7.40395 7.57783 7.68171 7.80987 7.97898 8.10176 8.52076 9.04887 9.66474 11.14884 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028920 B = 0.003974 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.969916 B = 7044.328826 C = 7390.390850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.026 4.026 3 C -0.212 4.212 4 C -0.220 4.220 5 C 0.023 3.977 6 C 0.161 3.839 7 H 0.105 0.895 8 C -0.180 4.180 9 N -0.674 5.674 10 C 0.083 3.917 11 H 0.037 0.963 12 C -0.118 4.118 13 C -0.098 4.098 14 C 0.053 3.947 15 H 0.029 0.971 16 C -0.512 4.512 17 H 0.054 0.946 18 C 0.063 3.937 19 N -0.891 5.891 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.119 4.119 25 O -0.163 6.163 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.342 0.658 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.063 0.937 39 H 0.259 0.741 40 H 0.043 0.957 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.563 12.149 -12.810 19.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.076 4.076 3 C -0.231 4.231 4 C -0.239 4.239 5 C -0.029 4.029 6 C 0.050 3.950 7 H 0.123 0.877 8 C -0.239 4.239 9 N -0.305 5.305 10 C -0.026 4.026 11 H 0.055 0.945 12 C -0.157 4.157 13 C -0.136 4.136 14 C 0.034 3.966 15 H 0.047 0.953 16 C -0.551 4.551 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.717 3.283 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.157 4.157 25 O -0.059 6.059 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.161 0.839 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.627 12.243 -12.096 19.251 hybrid contribution 0.117 -0.874 -0.143 0.894 sum -8.510 11.369 -12.239 18.747 Atomic orbital electron populations 1.20248 0.85524 1.03930 1.03063 1.22382 0.93958 0.84467 1.06775 1.21465 0.92761 0.99079 1.09836 1.21463 0.98072 0.93783 1.10611 1.22461 0.82816 0.94016 1.03569 1.20112 0.91110 0.91659 0.92074 0.87714 1.22530 1.02500 1.01925 0.96957 1.60748 1.19184 1.11130 1.39443 1.22342 0.88465 0.95768 0.95978 0.94508 1.22314 0.98598 0.98991 0.95758 1.22247 1.00814 0.94531 0.96025 1.19508 0.94299 0.93062 0.89707 0.95305 1.21092 1.15241 1.13813 1.04926 0.92801 1.24967 0.94906 0.96384 0.97622 1.69947 1.21802 1.39600 1.21563 0.86720 0.78870 0.83096 0.79648 1.20379 1.21388 1.20312 1.22664 1.01666 0.91631 0.99710 1.83980 1.16290 1.34662 1.70926 0.90527 0.90559 0.89669 0.83946 0.83852 0.92069 0.91874 0.91436 0.83877 0.93726 0.92405 0.93450 0.91807 0.93106 0.93783 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.42 36.01 0.38 -0.23 16 2 C -0.03 -0.32 7.32 -35.63 -0.26 -0.58 16 3 C -0.21 -2.59 10.81 -39.71 -0.43 -3.02 16 4 C -0.22 -2.87 10.80 -39.71 -0.43 -3.30 16 5 C 0.02 0.32 6.16 -35.63 -0.22 0.10 16 6 C 0.16 2.17 2.88 -68.87 -0.20 1.98 16 7 H 0.10 1.39 7.76 -51.93 -0.40 0.98 16 8 C -0.18 -2.04 9.13 37.15 0.34 -1.70 16 9 N -0.67 -10.72 5.89 -99.79 -0.59 -11.31 16 10 C 0.08 1.47 3.03 -66.60 -0.20 1.27 16 11 H 0.04 0.61 7.16 -51.93 -0.37 0.24 16 12 C -0.12 -2.31 6.46 -25.61 -0.17 -2.48 16 13 C -0.10 -2.34 5.67 -25.07 -0.14 -2.48 16 14 C 0.05 1.33 2.76 -89.78 -0.25 1.08 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.51 -14.25 8.53 -34.44 -0.29 -14.54 16 17 H 0.05 1.48 7.78 -52.49 -0.41 1.07 16 18 C 0.06 1.76 5.35 -17.82 -0.10 1.67 16 19 N -0.89 -25.90 12.22 55.43 0.68 -25.22 16 20 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.12 -2.44 5.66 -25.07 -0.14 -2.58 16 25 O -0.16 -2.43 10.65 5.69 0.06 -2.37 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.14 1.38 8.06 -52.48 -0.42 0.95 16 30 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 31 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.75 7.47 -51.93 -0.39 0.36 16 34 H 0.34 5.25 8.06 -39.29 -0.32 4.93 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 37 H 0.05 1.20 8.05 -51.93 -0.42 0.78 16 38 H 0.06 1.65 7.51 -51.93 -0.39 1.26 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.37 7.86 -51.93 -0.41 0.96 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -29.97 333.70 -8.83 -38.80 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.88 Total: 3.32 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -2.11 Total: -24.81 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.09 Total: -36.53 kcal Atomic # 8 Polarization: -2.43 SS G_CDS: 0.06 Total: -2.37 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.97 -8.83 -38.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296516304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.960 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds