Wall clock time and date at job start Mon Mar 30 2020 06:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34507 * 125.79153 * 2 1 4 4 C 1.41378 * 106.84171 * 180.02562 * 3 2 1 5 5 C 1.34505 * 106.84391 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.79358 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.47031 * 19.99554 * 6 5 4 8 8 C 1.52994 * 109.46840 * 259.99471 * 6 5 4 9 9 N 1.46900 * 109.47283 * 139.99402 * 6 5 4 10 10 C 1.46894 * 111.00104 * 205.00048 * 9 6 5 11 11 H 1.09001 * 110.01706 * 326.39066 * 10 9 6 12 12 C 1.53871 * 110.03518 * 87.83339 * 10 9 6 13 13 C 1.54269 * 106.59813 * 119.28416 * 12 10 9 14 14 C 1.54885 * 104.19677 * 23.61322 * 13 12 10 15 15 H 1.09002 * 110.75709 * 80.37016 * 14 13 12 16 16 C 1.50697 * 110.91369 * 203.67045 * 14 13 12 17 17 H 1.07991 * 120.00281 * 115.95471 * 16 14 13 18 18 C 1.37879 * 119.99754 * 295.94927 * 16 14 13 19 19 N 1.31512 * 120.00423 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99968 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47155 * 60.00064 * 20 18 16 22 22 H 1.48499 * 109.47271 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47236 * 300.00283 * 20 18 16 24 24 C 1.54271 * 110.03313 * 205.00093 * 10 9 6 25 25 O 1.34302 * 125.78607 * 180.34339 * 2 1 3 26 26 H 1.08998 * 109.46891 * 89.99854 * 1 2 3 27 27 H 1.09003 * 109.47069 * 209.99887 * 1 2 3 28 28 H 1.08997 * 109.47066 * 330.00018 * 1 2 3 29 29 H 1.08005 * 126.57844 * 0.02562 * 3 2 1 30 30 H 1.08006 * 126.57527 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47460 * 299.99448 * 8 6 5 32 32 H 1.09000 * 109.47425 * 59.99911 * 8 6 5 33 33 H 1.09003 * 109.46864 * 179.97438 * 8 6 5 34 34 H 1.00905 * 111.00198 * 81.04448 * 9 6 5 35 35 H 1.09000 * 110.03307 * 238.57168 * 12 10 9 36 36 H 1.08999 * 110.03179 * 359.95556 * 12 10 9 37 37 H 1.09002 * 110.48538 * 264.93327 * 13 12 10 38 38 H 1.08996 * 110.48433 * 142.29362 * 13 12 10 39 39 H 0.96996 * 120.00433 * 179.97438 * 19 18 16 40 40 H 1.09002 * 110.48367 * 98.42726 * 24 10 9 41 41 H 1.09003 * 110.48661 * 335.78146 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6319 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6379 -0.0019 7 1 5.6504 -1.0993 0.3501 8 6 5.0193 -2.1480 -1.4227 9 7 4.5051 -2.7765 0.8877 10 6 5.7584 -3.3600 1.3842 11 1 6.5343 -3.2809 0.6227 12 6 6.2035 -2.6384 2.6683 13 6 6.2388 -3.7042 3.7831 14 6 6.4162 -5.0424 3.0236 15 1 7.4597 -5.1945 2.7475 16 6 5.9095 -6.1990 3.8462 17 1 5.0675 -6.7798 3.5001 18 6 6.5211 -6.5156 5.0406 19 7 7.5464 -5.8081 5.4624 20 14 5.8935 -7.9498 6.0599 21 1 5.9886 -9.2008 5.2655 22 1 6.7155 -8.0802 7.2898 23 1 4.4771 -7.7081 6.4351 24 6 5.5389 -4.8391 1.7635 25 8 2.2924 -1.0894 -0.0065 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.9666 2.1204 0.0004 30 1 4.5212 1.2433 -0.0004 31 1 4.1395 -2.6867 -1.7746 32 1 5.2163 -1.3032 -2.0827 33 1 5.8797 -2.8172 -1.4230 34 1 3.9404 -3.4729 0.4249 35 1 7.1959 -2.2090 2.5306 36 1 5.4899 -1.8547 2.9226 37 1 5.3026 -3.7036 4.3413 38 1 7.0824 -3.5298 4.4509 39 1 7.9764 -6.0306 6.3028 40 1 5.8718 -5.4930 0.9574 41 1 4.4897 -5.0218 1.9956 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296516304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:16 Heat of formation + Delta-G solvation = -22.736209 kcal Electronic energy + Delta-G solvation = -19807.174101 eV Core-core repulsion = 16879.940557 eV Total energy + Delta-G solvation = -2927.233544 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.44418 -39.60696 -36.82573 -34.41744 -34.01367 -32.60090 -30.76644 -29.85874 -27.76868 -27.21081 -25.54697 -23.26272 -22.64558 -21.27556 -20.76821 -20.46332 -18.41023 -17.67397 -17.04008 -16.83276 -16.58174 -16.00020 -15.59768 -15.00404 -14.70969 -14.23152 -14.00716 -13.91688 -13.78961 -13.64609 -13.61385 -13.50939 -13.01758 -12.89558 -12.71719 -12.54111 -12.39498 -12.32926 -12.04364 -11.71332 -11.61665 -11.32302 -10.97519 -10.79683 -10.73405 -10.43562 -9.39937 -9.08342 -8.09914 -6.19391 0.85321 1.41553 1.43224 1.50585 1.73509 2.10012 2.44670 3.15298 3.20702 3.73942 3.93623 4.04162 4.09209 4.16808 4.23868 4.28028 4.33550 4.59188 4.65615 4.72786 4.74591 4.79528 4.86590 4.91603 4.97641 4.99571 5.10762 5.16371 5.18223 5.19920 5.29581 5.34744 5.41529 5.49278 5.67529 5.71579 5.91172 6.02700 6.18022 6.37589 6.41213 6.46268 6.90855 7.47649 8.98726 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028920 B = 0.003974 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.969916 B = 7044.328826 C = 7390.390850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.037 4.037 3 C -0.223 4.223 4 C -0.224 4.224 5 C -0.002 4.002 6 C 0.163 3.837 7 H 0.109 0.891 8 C -0.172 4.172 9 N -0.683 5.683 10 C 0.098 3.902 11 H 0.058 0.942 12 C -0.108 4.108 13 C -0.090 4.090 14 C 0.042 3.958 15 H 0.003 0.997 16 C -0.533 4.533 17 H 0.051 0.949 18 C 0.012 3.988 19 N -0.920 5.920 20 Si 0.952 3.048 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.108 4.108 25 O -0.186 6.186 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.166 0.834 30 H 0.159 0.841 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.346 0.654 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.024 0.976 38 H 0.035 0.965 39 H 0.260 0.740 40 H 0.056 0.944 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.573 12.925 -14.020 21.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 C -0.242 4.242 4 C -0.244 4.244 5 C -0.053 4.053 6 C 0.053 3.947 7 H 0.126 0.874 8 C -0.231 4.231 9 N -0.314 5.314 10 C -0.011 4.011 11 H 0.076 0.924 12 C -0.146 4.146 13 C -0.129 4.129 14 C 0.023 3.977 15 H 0.021 0.979 16 C -0.571 4.571 17 H 0.070 0.930 18 C -0.187 4.187 19 N -0.559 5.559 20 Si 0.777 3.223 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.146 4.146 25 O -0.083 6.083 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.124 0.876 29 H 0.184 0.816 30 H 0.177 0.823 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.165 0.835 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.646 13.023 -13.324 20.981 hybrid contribution 0.398 -1.070 0.234 1.165 sum -9.249 11.954 -13.091 19.995 Atomic orbital electron populations 1.20430 0.82993 1.04822 1.04453 1.23193 0.95571 0.84096 1.05855 1.21828 0.92406 1.00243 1.09705 1.21805 0.99209 0.93673 1.09680 1.22620 0.82884 0.94615 1.05193 1.20161 0.91203 0.90587 0.92766 0.87362 1.22446 1.02490 1.02419 0.95750 1.60618 1.18169 1.11729 1.40932 1.22056 0.89966 0.93402 0.95631 0.92438 1.22202 0.99725 0.97698 0.94994 1.22038 0.98239 0.95909 0.96713 1.19501 0.93582 0.92831 0.91768 0.97864 1.21497 1.15237 1.14770 1.05643 0.93030 1.25755 0.95129 0.98965 0.98824 1.70076 1.22855 1.41050 1.21913 0.85712 0.78328 0.80113 0.78106 1.19466 1.20981 1.19862 1.22485 1.00055 0.94146 0.97941 1.83961 1.16827 1.35971 1.71506 0.88805 0.90766 0.87639 0.81626 0.82299 0.92299 0.90459 0.91050 0.83496 0.92250 0.92109 0.95754 0.94597 0.93158 0.92479 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.42 71.24 0.74 -0.30 16 2 C -0.04 -0.88 7.32 24.83 0.18 -0.69 16 3 C -0.22 -4.99 10.81 22.19 0.24 -4.75 16 4 C -0.22 -5.46 10.80 22.19 0.24 -5.22 16 5 C 0.00 -0.06 6.16 24.83 0.15 0.09 16 6 C 0.16 4.10 2.88 44.17 0.13 4.23 16 7 H 0.11 2.62 7.76 -2.39 -0.02 2.61 16 8 C -0.17 -3.52 9.13 71.98 0.66 -2.86 16 9 N -0.68 -20.78 5.89 -469.62 -2.77 -23.55 16 10 C 0.10 3.36 3.03 45.64 0.14 3.50 16 11 H 0.06 1.76 7.16 -2.39 -0.02 1.74 16 12 C -0.11 -4.15 6.46 31.32 0.20 -3.95 16 13 C -0.09 -4.44 5.67 31.67 0.18 -4.26 16 14 C 0.04 2.15 2.76 -10.25 -0.03 2.12 16 15 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 16 C -0.53 -30.19 8.53 25.60 0.22 -29.97 16 17 H 0.05 2.86 7.78 -2.92 -0.02 2.84 16 18 C 0.01 0.68 5.35 84.66 0.45 1.13 16 19 N -0.92 -54.71 12.22 21.45 0.26 -54.45 16 20 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 24 C -0.11 -4.41 5.66 31.67 0.18 -4.23 16 25 O -0.19 -5.35 10.65 -2.56 -0.03 -5.38 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.17 2.76 8.06 -2.91 -0.02 2.73 16 30 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 31 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.40 7.47 -2.39 -0.02 1.38 16 34 H 0.35 10.17 8.06 -89.69 -0.72 9.45 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 2.30 7.92 -2.39 -0.02 2.28 16 37 H 0.02 1.25 8.05 -2.39 -0.02 1.23 16 38 H 0.04 1.91 7.51 -2.39 -0.02 1.89 16 39 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 40 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.06 2.37 7.86 -2.39 -0.02 2.35 16 Total: -1.00 -65.23 333.70 3.45 -61.78 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.27 Total: 20.11 kcal Atomic # 6 Polarization: -48.85 SS G_CDS: 3.68 Total: -45.17 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -2.50 Total: -78.00 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.03 Total: -5.38 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.23 3.45 -61.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296516304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.040 kcal (2) G-P(sol) polarization free energy of solvation -65.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds