Wall clock time and date at job start Mon Mar 30 2020 07:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47306 * 2 1 4 4 C 1.53003 * 109.46810 * 64.99950 * 3 2 1 5 5 C 1.53002 * 109.47016 * 185.93520 * 4 3 2 6 6 C 1.52996 * 109.47339 * 184.99839 * 3 2 1 7 7 O 1.42900 * 109.47281 * 173.26077 * 6 3 2 8 8 C 1.35960 * 117.00525 * 179.97438 * 7 6 3 9 9 C 1.39417 * 119.81581 * 0.02562 * 8 7 6 10 10 C 1.38100 * 120.56675 * 180.02562 * 9 8 7 11 11 C 1.38710 * 120.20301 * 0.25235 * 10 9 8 12 12 N 1.38858 * 120.17972 * 179.72128 * 11 10 9 13 13 C 1.41543 * 119.63606 * 359.45990 * 11 10 9 14 14 C 1.41027 * 120.27452 * 180.27297 * 13 11 10 15 15 H 1.08002 * 120.00516 * 31.27638 * 14 13 11 16 16 C 1.39913 * 119.99847 * 211.27696 * 14 13 11 17 17 N 1.30889 * 119.99929 * 13.77461 * 16 14 13 18 18 Si 1.86793 * 120.00020 * 193.77504 * 16 14 13 19 19 H 1.48505 * 109.47249 * 89.99751 * 18 16 14 20 20 H 1.48500 * 109.47360 * 210.00085 * 18 16 14 21 21 H 1.48503 * 109.47083 * 329.99903 * 18 16 14 22 22 C 1.37834 * 119.82422 * 180.02562 * 8 7 6 23 23 H 1.09005 * 109.47115 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47270 * 299.99656 * 1 2 3 25 25 H 1.09002 * 109.47231 * 59.99824 * 1 2 3 26 26 H 1.09004 * 109.46746 * 240.00143 * 2 1 3 27 27 H 1.08995 * 109.47388 * 120.00543 * 2 1 3 28 28 H 1.09001 * 109.47323 * 305.00104 * 3 2 1 29 29 H 1.08996 * 109.47234 * 305.93982 * 4 3 2 30 30 H 1.09004 * 109.46851 * 65.94375 * 4 3 2 31 31 H 1.08996 * 109.46937 * 170.98490 * 5 4 3 32 32 H 1.08999 * 109.47479 * 290.99168 * 5 4 3 33 33 H 1.09005 * 109.46635 * 50.99000 * 5 4 3 34 34 H 1.09006 * 109.47208 * 53.26806 * 6 3 2 35 35 H 1.08995 * 109.47510 * 293.26320 * 6 3 2 36 36 H 1.08003 * 119.71955 * 0.02562 * 9 8 7 37 37 H 1.08007 * 119.89612 * 179.97438 * 10 9 8 38 38 H 0.96999 * 120.00037 * 0.02562 * 12 11 10 39 39 H 0.96998 * 119.99557 * 180.02562 * 12 11 10 40 40 H 0.96997 * 120.00006 * 179.97438 * 17 16 14 41 41 H 1.07999 * 120.11147 * 359.96152 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6352 2.1264 1.3074 5 6 2.0143 3.6075 1.2467 6 6 3.5648 1.4443 -0.1257 7 8 4.0282 2.7868 -0.2834 8 6 5.3700 2.9660 -0.4093 9 6 6.2223 1.8630 -0.3812 10 6 7.5877 2.0272 -0.5072 11 6 8.1270 3.2963 -0.6582 12 7 9.5004 3.4613 -0.7790 13 6 7.2691 4.4215 -0.6941 14 6 7.8025 5.7174 -0.8528 15 1 8.7070 5.8628 -1.4249 16 6 7.1599 6.8147 -0.2693 17 7 6.2336 6.6253 0.6359 18 14 7.6239 8.5499 -0.7819 19 1 6.7725 8.9735 -1.9226 20 1 7.4172 9.4757 0.3607 21 1 9.0510 8.5801 -1.1915 22 6 5.8803 4.2370 -0.5640 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6054 1.9815 -0.8418 29 1 0.5585 2.0324 1.4484 30 1 2.1537 1.6526 2.1410 31 1 1.5863 4.1274 2.1038 32 1 3.0997 3.7059 1.2669 33 1 1.6269 4.0442 0.3262 34 1 3.8585 0.8542 -0.9939 35 1 4.0040 1.0116 0.7731 36 1 5.8112 0.8717 -0.2599 37 1 8.2380 1.1652 -0.4835 38 1 10.0855 2.6879 -0.7582 39 1 9.8747 4.3499 -0.8841 40 1 5.7884 7.3860 1.0407 41 1 5.2164 5.0885 -0.5859 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309988428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:38 Heat of formation + Delta-G solvation = -46.300567 kcal Electronic energy + Delta-G solvation = -20012.736021 eV Core-core repulsion = 17084.480650 eV Total energy + Delta-G solvation = -2928.255371 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.93732 -37.34051 -35.83294 -33.47893 -32.30710 -31.39882 -29.59112 -28.61170 -26.60140 -24.97862 -23.66967 -22.51571 -21.23421 -19.97965 -19.63634 -17.55535 -16.16726 -15.78805 -15.61040 -15.40648 -14.71425 -14.49068 -14.22750 -13.87931 -13.29203 -12.89867 -12.61833 -12.42552 -12.29683 -11.95081 -11.74591 -11.59862 -11.45392 -11.32080 -11.10705 -11.02951 -10.86971 -10.62761 -10.55235 -10.35071 -10.23764 -10.03658 -9.71000 -9.29126 -9.09317 -8.51442 -7.31512 -6.63848 -5.93058 -4.14996 2.85164 3.14171 3.16046 3.21749 3.30613 4.02773 4.18536 4.75994 4.89649 5.02517 5.17778 5.31320 5.32672 5.53250 5.58819 5.71708 5.78071 5.83899 5.94063 5.94667 5.98641 6.04152 6.11816 6.23662 6.36445 6.42123 6.43505 6.46317 6.65184 6.94474 7.05451 7.07518 7.26589 7.56168 7.62208 7.71196 8.00358 8.11338 8.38894 8.75508 8.89227 8.92810 9.15344 9.21975 10.37460 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021740 B = 0.005284 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.634180 B = 5297.581549 C = 6373.170432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.088 4.088 4 C -0.113 4.113 5 C -0.153 4.153 6 C 0.072 3.928 7 O -0.317 6.317 8 C 0.089 3.911 9 C -0.269 4.269 10 C -0.158 4.158 11 C 0.099 3.901 12 N -0.885 5.885 13 C 0.093 3.907 14 C -0.469 4.469 15 H 0.073 0.927 16 C 0.077 3.923 17 N -0.799 5.799 18 Si 0.905 3.095 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.265 1.265 22 C -0.161 4.161 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.376 0.624 39 H 0.391 0.609 40 H 0.277 0.723 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 -7.520 -0.035 9.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.107 4.107 4 C -0.150 4.150 5 C -0.210 4.210 6 C -0.004 4.004 7 O -0.232 6.232 8 C 0.045 3.955 9 C -0.289 4.289 10 C -0.182 4.182 11 C -0.001 4.001 12 N -0.428 5.428 13 C 0.089 3.911 14 C -0.500 4.500 15 H 0.092 0.908 16 C -0.140 4.140 17 N -0.425 5.425 18 Si 0.730 3.270 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.190 1.190 22 C -0.182 4.182 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.201 0.799 39 H 0.219 0.781 40 H 0.088 0.912 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.839 -7.233 0.138 9.955 hybrid contribution 0.689 0.539 -0.106 0.882 sum -6.150 -6.694 0.032 9.090 Atomic orbital electron populations 1.21802 0.95706 1.01250 1.02075 1.21475 0.95967 0.96001 1.02046 1.21276 0.94158 0.95910 0.99328 1.21563 1.00034 0.96975 0.96452 1.21876 1.04406 0.94498 1.00239 1.22497 0.93430 0.84536 0.99922 1.86083 1.21605 1.26525 1.88967 1.18757 0.80572 0.94474 1.01735 1.20183 0.93661 0.95759 1.19339 1.19728 0.94187 0.94038 1.10271 1.17961 0.83961 0.93487 1.04728 1.41840 1.04057 1.09379 1.87497 1.16964 0.89977 0.91303 0.92883 1.19098 1.09881 0.90818 1.30190 0.90848 1.25758 0.94072 1.00955 0.93185 1.69842 1.20480 1.33022 1.19166 0.86382 0.79794 0.81890 0.78940 1.19517 1.20539 1.18966 1.20244 0.94646 0.92920 1.10375 0.92996 0.92357 0.92737 0.91935 0.91911 0.90439 0.92529 0.92542 0.94207 0.89774 0.93147 0.93466 0.93306 0.89030 0.89445 0.79932 0.78069 0.91182 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.68 37.16 0.36 -1.08 16 2 C -0.12 -1.30 5.40 -26.74 -0.14 -1.44 16 3 C -0.09 -1.22 2.20 -90.62 -0.20 -1.42 16 4 C -0.11 -1.56 5.28 -26.73 -0.14 -1.70 16 5 C -0.15 -2.51 8.97 37.16 0.33 -2.18 16 6 C 0.07 1.23 4.07 37.16 0.15 1.38 16 7 O -0.32 -6.81 6.99 -19.61 -0.14 -6.95 16 8 C 0.09 2.17 6.67 -39.29 -0.26 1.90 16 9 C -0.27 -6.16 9.03 -39.19 -0.35 -6.51 16 10 C -0.16 -3.63 9.87 -39.46 -0.39 -4.02 16 11 C 0.10 2.41 6.79 -83.25 -0.56 1.84 16 12 N -0.89 -17.93 8.98 32.74 0.29 -17.63 16 13 C 0.09 2.49 5.52 -106.65 -0.59 1.90 16 14 C -0.47 -12.29 8.36 -37.90 -0.32 -12.61 16 15 H 0.07 1.82 6.89 -52.49 -0.36 1.46 16 16 C 0.08 1.95 5.17 -17.33 -0.09 1.86 16 17 N -0.80 -21.20 11.17 55.55 0.62 -20.58 16 18 Si 0.90 19.01 29.58 -169.99 -5.03 13.98 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 C -0.16 -4.30 8.56 -38.80 -0.33 -4.64 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.54 6.44 -51.93 -0.33 0.21 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 29 H 0.06 0.68 6.31 -51.93 -0.33 0.35 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.68 5.98 -51.93 -0.31 1.37 16 33 H 0.05 0.83 8.10 -51.93 -0.42 0.41 16 34 H 0.05 0.78 7.65 -51.93 -0.40 0.38 16 35 H 0.05 0.83 7.64 -51.93 -0.40 0.43 16 36 H 0.09 1.87 6.26 -52.48 -0.33 1.54 16 37 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 38 H 0.38 6.38 8.83 -40.82 -0.36 6.02 16 39 H 0.39 7.76 7.15 -40.82 -0.29 7.47 16 40 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 41 H 0.12 3.41 6.51 -52.49 -0.34 3.07 16 LS Contribution 324.67 15.07 4.89 4.89 Total: -1.00 -28.12 324.67 -8.28 -36.40 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -6.39 Total: 16.59 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -2.54 Total: -26.71 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.91 Total: -38.21 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.14 Total: -6.95 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.12 -8.28 -36.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309988428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.900 kcal (2) G-P(sol) polarization free energy of solvation -28.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds