Wall clock time and date at job start Mon Mar 30 2020 07:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47306 * 2 1 4 4 C 1.53003 * 109.46810 * 64.99950 * 3 2 1 5 5 C 1.53002 * 109.47016 * 185.93520 * 4 3 2 6 6 C 1.52996 * 109.47339 * 184.99839 * 3 2 1 7 7 O 1.42900 * 109.47281 * 173.26077 * 6 3 2 8 8 C 1.35960 * 117.00525 * 179.97438 * 7 6 3 9 9 C 1.39417 * 119.81581 * 0.02562 * 8 7 6 10 10 C 1.38100 * 120.56675 * 180.02562 * 9 8 7 11 11 C 1.38710 * 120.20301 * 0.25235 * 10 9 8 12 12 N 1.38858 * 120.17972 * 179.72128 * 11 10 9 13 13 C 1.41543 * 119.63606 * 359.45990 * 11 10 9 14 14 C 1.41027 * 120.27452 * 180.27297 * 13 11 10 15 15 H 1.08002 * 120.00516 * 31.27638 * 14 13 11 16 16 C 1.39913 * 119.99847 * 211.27696 * 14 13 11 17 17 N 1.30889 * 119.99929 * 13.77461 * 16 14 13 18 18 Si 1.86793 * 120.00020 * 193.77504 * 16 14 13 19 19 H 1.48505 * 109.47249 * 89.99751 * 18 16 14 20 20 H 1.48500 * 109.47360 * 210.00085 * 18 16 14 21 21 H 1.48503 * 109.47083 * 329.99903 * 18 16 14 22 22 C 1.37834 * 119.82422 * 180.02562 * 8 7 6 23 23 H 1.09005 * 109.47115 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47270 * 299.99656 * 1 2 3 25 25 H 1.09002 * 109.47231 * 59.99824 * 1 2 3 26 26 H 1.09004 * 109.46746 * 240.00143 * 2 1 3 27 27 H 1.08995 * 109.47388 * 120.00543 * 2 1 3 28 28 H 1.09001 * 109.47323 * 305.00104 * 3 2 1 29 29 H 1.08996 * 109.47234 * 305.93982 * 4 3 2 30 30 H 1.09004 * 109.46851 * 65.94375 * 4 3 2 31 31 H 1.08996 * 109.46937 * 170.98490 * 5 4 3 32 32 H 1.08999 * 109.47479 * 290.99168 * 5 4 3 33 33 H 1.09005 * 109.46635 * 50.99000 * 5 4 3 34 34 H 1.09006 * 109.47208 * 53.26806 * 6 3 2 35 35 H 1.08995 * 109.47510 * 293.26320 * 6 3 2 36 36 H 1.08003 * 119.71955 * 0.02562 * 9 8 7 37 37 H 1.08007 * 119.89612 * 179.97438 * 10 9 8 38 38 H 0.96999 * 120.00037 * 0.02562 * 12 11 10 39 39 H 0.96998 * 119.99557 * 180.02562 * 12 11 10 40 40 H 0.96997 * 120.00006 * 179.97438 * 17 16 14 41 41 H 1.07999 * 120.11147 * 359.96152 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6352 2.1264 1.3074 5 6 2.0143 3.6075 1.2467 6 6 3.5648 1.4443 -0.1257 7 8 4.0282 2.7868 -0.2834 8 6 5.3700 2.9660 -0.4093 9 6 6.2223 1.8630 -0.3812 10 6 7.5877 2.0272 -0.5072 11 6 8.1270 3.2963 -0.6582 12 7 9.5004 3.4613 -0.7790 13 6 7.2691 4.4215 -0.6941 14 6 7.8025 5.7174 -0.8528 15 1 8.7070 5.8628 -1.4249 16 6 7.1599 6.8147 -0.2693 17 7 6.2336 6.6253 0.6359 18 14 7.6239 8.5499 -0.7819 19 1 6.7725 8.9735 -1.9226 20 1 7.4172 9.4757 0.3607 21 1 9.0510 8.5801 -1.1915 22 6 5.8803 4.2370 -0.5640 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6054 1.9815 -0.8418 29 1 0.5585 2.0324 1.4484 30 1 2.1537 1.6526 2.1410 31 1 1.5863 4.1274 2.1038 32 1 3.0997 3.7059 1.2669 33 1 1.6269 4.0442 0.3262 34 1 3.8585 0.8542 -0.9939 35 1 4.0040 1.0116 0.7731 36 1 5.8112 0.8717 -0.2599 37 1 8.2380 1.1652 -0.4835 38 1 10.0855 2.6879 -0.7582 39 1 9.8747 4.3499 -0.8841 40 1 5.7884 7.3860 1.0407 41 1 5.2164 5.0885 -0.5859 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309988428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:38 Heat of formation + Delta-G solvation = -61.482610 kcal Electronic energy + Delta-G solvation = -20013.394364 eV Core-core repulsion = 17084.480650 eV Total energy + Delta-G solvation = -2928.913714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.58532 -38.92624 -37.21416 -35.37223 -34.00630 -32.48788 -31.47719 -29.98449 -28.27204 -26.85734 -24.98621 -23.59025 -23.02601 -21.76102 -20.81412 -19.36534 -17.90591 -17.51104 -17.17405 -17.08062 -16.42485 -15.81291 -15.35707 -15.07681 -14.76083 -14.56516 -14.26525 -13.95880 -13.65015 -13.52557 -13.16532 -13.12883 -12.94721 -12.77455 -12.66454 -12.55256 -12.17779 -12.07414 -11.85646 -11.81167 -11.58036 -11.40313 -11.22209 -10.99860 -10.91884 -10.21030 -9.26103 -8.53982 -7.74737 -6.11034 1.01365 1.36078 1.40813 1.52537 1.54674 2.26048 2.70398 2.87540 3.66548 3.78508 3.83850 3.92218 4.10361 4.39042 4.41797 4.43521 4.51144 4.61283 4.64505 4.66029 4.75608 4.94329 4.96935 5.07229 5.11869 5.15360 5.17698 5.25125 5.30375 5.34183 5.45157 5.53575 5.62785 5.69339 5.77968 5.91448 6.05927 6.24270 6.46895 6.91895 7.00001 7.09423 7.34145 7.58093 8.49545 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021740 B = 0.005284 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.634180 B = 5297.581549 C = 6373.170432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.083 4.083 4 C -0.108 4.108 5 C -0.150 4.150 6 C 0.064 3.936 7 O -0.329 6.329 8 C 0.080 3.920 9 C -0.265 4.265 10 C -0.163 4.163 11 C 0.090 3.910 12 N -0.873 5.873 13 C 0.061 3.939 14 C -0.495 4.495 15 H 0.080 0.920 16 C 0.032 3.968 17 N -0.837 5.837 18 Si 0.978 3.022 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.254 1.254 22 C -0.189 4.189 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.394 0.606 39 H 0.393 0.607 40 H 0.280 0.720 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.572 -8.966 -0.096 11.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.101 4.101 4 C -0.145 4.145 5 C -0.207 4.207 6 C -0.011 4.011 7 O -0.244 6.244 8 C 0.035 3.965 9 C -0.286 4.286 10 C -0.187 4.187 11 C -0.012 4.012 12 N -0.417 5.417 13 C 0.056 3.944 14 C -0.526 4.526 15 H 0.098 0.902 16 C -0.181 4.181 17 N -0.464 5.464 18 Si 0.800 3.200 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.177 1.177 22 C -0.211 4.211 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.222 0.778 39 H 0.221 0.779 40 H 0.091 0.909 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.947 -8.712 0.074 11.143 hybrid contribution 0.685 0.865 -0.073 1.106 sum -6.263 -7.847 0.001 10.039 Atomic orbital electron populations 1.21794 0.94271 1.02395 1.02192 1.21456 0.97116 0.93603 1.02748 1.21294 0.91744 0.98072 0.98999 1.21554 1.01695 0.94744 0.96553 1.21811 1.01592 0.96981 1.00352 1.22846 0.95551 0.82515 1.00189 1.86102 1.20184 1.29455 1.88677 1.18835 0.82099 0.94178 1.01342 1.20525 0.93752 0.96478 1.17816 1.20116 0.94703 0.94624 1.09227 1.18123 0.85327 0.93383 1.04386 1.41719 1.02865 1.10385 1.86708 1.17316 0.90446 0.92659 0.93985 1.19383 1.10672 0.91505 1.31005 0.90175 1.26633 0.93746 1.05007 0.92691 1.69948 1.21788 1.34283 1.20399 0.85269 0.79871 0.76492 0.78408 1.19453 1.19978 1.17719 1.20166 0.94875 0.93226 1.12815 0.91375 0.92068 0.92824 0.91374 0.91120 0.91210 0.89873 0.92280 0.93079 0.93777 0.93954 0.92776 0.93121 0.86267 0.86197 0.77832 0.77861 0.90945 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.68 71.98 0.70 -1.70 16 2 C -0.11 -2.18 5.40 30.59 0.17 -2.01 16 3 C -0.08 -2.18 2.20 -10.80 -0.02 -2.21 16 4 C -0.11 -2.86 5.28 30.60 0.16 -2.70 16 5 C -0.15 -5.02 8.97 71.98 0.65 -4.38 16 6 C 0.06 2.14 4.07 71.98 0.29 2.44 16 7 O -0.33 -14.54 6.99 -93.10 -0.65 -15.19 16 8 C 0.08 4.02 6.67 22.46 0.15 4.17 16 9 C -0.27 -11.93 9.03 22.52 0.20 -11.73 16 10 C -0.16 -7.22 9.87 22.35 0.22 -7.00 16 11 C 0.09 4.33 6.79 38.96 0.26 4.59 16 12 N -0.87 -34.37 8.98 -50.34 -0.45 -34.83 16 13 C 0.06 3.33 5.52 -21.18 -0.12 3.22 16 14 C -0.49 -26.62 8.36 23.36 0.20 -26.43 16 15 H 0.08 4.03 6.89 -2.91 -0.02 4.01 16 16 C 0.03 1.67 5.17 85.24 0.44 2.11 16 17 N -0.84 -46.41 11.17 21.82 0.24 -46.17 16 18 Si 0.98 39.69 29.58 68.60 2.03 41.72 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 20 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 21 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 22 C -0.19 -10.65 8.56 22.78 0.19 -10.46 16 23 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 24 H 0.06 0.95 6.44 -2.39 -0.02 0.93 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 26 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.96 8.11 -2.39 -0.02 1.94 16 29 H 0.08 1.78 6.31 -2.39 -0.02 1.77 16 30 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.84 5.98 -2.39 -0.01 1.82 16 33 H 0.04 1.43 8.10 -2.38 -0.02 1.41 16 34 H 0.05 1.72 7.65 -2.38 -0.02 1.70 16 35 H 0.05 1.66 7.64 -2.39 -0.02 1.64 16 36 H 0.12 4.60 6.26 -2.91 -0.02 4.58 16 37 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 38 H 0.39 12.54 8.83 -92.71 -0.82 11.72 16 39 H 0.39 15.31 7.15 -92.71 -0.66 14.65 16 40 H 0.28 14.34 8.30 -92.71 -0.77 13.57 16 41 H 0.09 5.54 6.51 -2.91 -0.02 5.52 16 Total: -1.00 -62.96 324.67 4.21 -58.75 By element: Atomic # 1 Polarization: 48.24 SS G_CDS: -0.45 Total: 47.80 kcal Atomic # 6 Polarization: -55.57 SS G_CDS: 3.49 Total: -52.08 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -0.21 Total: -80.99 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.65 Total: -15.19 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -62.96 4.21 -58.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309988428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.737 kcal (2) G-P(sol) polarization free energy of solvation -62.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds