Wall clock time and date at job start Mon Mar 30 2020 07:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.46781 * 2 1 4 4 O 1.42897 * 109.47446 * 239.99948 * 2 1 3 5 5 C 1.53005 * 109.47548 * 119.99497 * 2 1 3 6 6 C 1.52995 * 109.46499 * 60.00313 * 5 2 1 7 7 N 1.46903 * 109.46934 * 180.02562 * 6 5 2 8 8 C 1.46900 * 111.00007 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.46991 * 35.00212 * 8 7 6 10 10 C 1.50698 * 109.47374 * 274.99908 * 8 7 6 11 11 H 1.08001 * 120.00095 * 294.98586 * 10 8 7 12 12 C 1.37882 * 119.99875 * 114.70361 * 10 8 7 13 13 N 1.31515 * 119.99982 * 184.83854 * 12 10 8 14 14 Si 1.86794 * 120.00053 * 4.84804 * 12 10 8 15 15 H 1.48497 * 109.47347 * 84.69518 * 14 12 10 16 16 H 1.48498 * 109.47192 * 204.69826 * 14 12 10 17 17 H 1.48505 * 109.47257 * 324.70046 * 14 12 10 18 18 C 1.50704 * 109.47066 * 155.00241 * 8 7 6 19 19 C 1.38233 * 119.99902 * 44.79097 * 18 8 7 20 20 C 1.38234 * 119.99500 * 179.80939 * 19 18 8 21 21 C 1.38237 * 120.00510 * 0.40360 * 20 19 18 22 22 C 1.38239 * 119.99485 * 359.85147 * 21 20 19 23 23 C 1.38229 * 120.00321 * 359.95558 * 22 21 20 24 24 H 1.09004 * 109.47503 * 299.99819 * 1 2 3 25 25 H 1.08996 * 109.47332 * 60.00417 * 1 2 3 26 26 H 1.09006 * 109.46996 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47160 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47377 * 299.99532 * 3 2 1 29 29 H 1.08998 * 109.47272 * 60.00133 * 3 2 1 30 30 H 0.96703 * 113.99915 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.46568 * 300.00864 * 5 2 1 32 32 H 1.08994 * 109.47601 * 180.02562 * 5 2 1 33 33 H 1.09001 * 109.47667 * 60.00319 * 6 5 2 34 34 H 1.09003 * 109.47344 * 300.00088 * 6 5 2 35 35 H 1.00903 * 110.99705 * 56.04862 * 7 6 5 36 36 H 0.97003 * 120.00040 * 180.02562 * 13 12 10 37 37 H 1.07996 * 120.00243 * 359.97438 * 19 18 8 38 38 H 1.08007 * 119.99753 * 180.22877 * 20 19 18 39 39 H 1.07995 * 119.99907 * 179.83309 * 21 20 19 40 40 H 1.07996 * 119.99531 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.00239 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7211 1.2493 6 6 1.5301 -2.1636 1.2493 7 7 2.0193 -2.8559 2.4491 8 6 1.5478 -4.2468 2.4833 9 1 1.5086 -4.6422 1.4683 10 6 0.1715 -4.2958 3.0952 11 1 0.0303 -4.0191 4.1296 12 6 -0.9082 -4.6882 2.3328 13 7 -2.1217 -4.6402 2.8376 14 14 -0.6475 -5.2883 0.5832 15 1 -0.3077 -6.7337 0.6011 16 1 -1.8912 -5.0818 -0.2014 17 1 0.4639 -4.5263 -0.0410 18 6 2.4949 -5.0780 3.3100 19 6 2.9541 -4.6010 4.5235 20 6 3.8197 -5.3652 5.2835 21 6 4.2326 -6.6027 4.8263 22 6 3.7775 -7.0773 3.6103 23 6 2.9088 -6.3149 2.8521 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 2.9703 -0.7114 -1.2330 31 1 1.6766 -0.2073 2.1392 32 1 3.1300 -0.7207 1.2495 33 1 1.8934 -2.6775 0.3593 34 1 0.4401 -2.1637 1.2493 35 1 1.7495 -2.3622 3.2867 36 1 -2.8814 -4.9166 2.3014 37 1 2.6345 -3.6326 4.8789 38 1 4.1756 -4.9942 6.2333 39 1 4.9110 -7.1985 5.4189 40 1 4.1004 -8.0439 3.2529 41 1 2.5536 -6.6855 1.9019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310334706.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:58 Heat of formation + Delta-G solvation = -61.970686 kcal Electronic energy + Delta-G solvation = -20171.149177 eV Core-core repulsion = 17242.214298 eV Total energy + Delta-G solvation = -2928.934879 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.15698 -39.50391 -37.18964 -34.62662 -33.72246 -32.26075 -31.58736 -29.63166 -28.30358 -27.79136 -24.61107 -23.65138 -22.75873 -21.46909 -21.04691 -19.28283 -17.72772 -17.28383 -16.79663 -16.48369 -16.15647 -15.88701 -15.55190 -15.12021 -14.85755 -14.69750 -14.18138 -13.96084 -13.84145 -13.57140 -13.53789 -13.20005 -13.06005 -12.93117 -12.82236 -12.62850 -12.41464 -12.04989 -11.97718 -11.75613 -11.65949 -11.45939 -11.24341 -10.91709 -10.70071 -9.63604 -9.42718 -9.01081 -8.41479 -6.45462 0.68605 0.74979 1.22357 1.25362 1.31857 2.20802 2.90226 3.17116 3.31476 3.59855 3.93607 3.98479 4.15024 4.17249 4.29029 4.32526 4.41742 4.53213 4.59922 4.65125 4.74604 4.78256 4.87083 4.89661 4.92659 4.99590 5.08275 5.10378 5.24133 5.29993 5.32601 5.39187 5.41642 5.46231 5.75467 5.80029 5.97704 6.05328 6.32220 6.42183 6.61569 6.77370 6.93525 7.22198 8.74545 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.006822 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.993137 B = 4103.096740 C = 5125.507142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.127 3.873 3 C -0.166 4.166 4 O -0.578 6.578 5 C -0.129 4.129 6 C 0.070 3.930 7 N -0.675 5.675 8 C 0.208 3.792 9 H 0.042 0.958 10 C -0.526 4.526 11 H 0.039 0.961 12 C 0.030 3.970 13 N -0.936 5.936 14 Si 0.920 3.080 15 H -0.264 1.264 16 H -0.287 1.287 17 H -0.248 1.248 18 C -0.049 4.049 19 C -0.121 4.121 20 C -0.124 4.124 21 C -0.142 4.142 22 C -0.121 4.121 23 C -0.155 4.155 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.035 0.965 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.388 0.612 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.007 0.993 35 H 0.331 0.669 36 H 0.266 0.734 37 H 0.110 0.890 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.573 6.173 -2.903 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.087 3.913 3 C -0.223 4.223 4 O -0.386 6.386 5 C -0.167 4.167 6 C -0.060 4.060 7 N -0.304 5.304 8 C 0.100 3.900 9 H 0.060 0.940 10 C -0.566 4.566 11 H 0.057 0.943 12 C -0.170 4.170 13 N -0.575 5.575 14 Si 0.745 3.255 15 H -0.189 1.189 16 H -0.213 1.213 17 H -0.173 1.173 18 C -0.050 4.050 19 C -0.139 4.139 20 C -0.142 4.142 21 C -0.160 4.160 22 C -0.139 4.139 23 C -0.174 4.174 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.237 0.763 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.148 0.852 36 H 0.076 0.924 37 H 0.129 0.871 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.159 0.841 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.362 5.925 -3.341 14.110 hybrid contribution -1.260 -0.315 -0.326 1.339 sum 11.102 5.610 -3.667 12.968 Atomic orbital electron populations 1.21853 0.94129 1.01586 1.02808 1.21218 0.94128 0.91825 0.84165 1.22377 1.02215 0.94603 1.03146 1.86529 1.27903 1.80059 1.44148 1.22173 1.01841 0.94065 0.98618 1.21750 0.96321 0.94827 0.93055 1.61101 1.61758 1.02865 1.04695 1.18521 0.89821 0.87312 0.94393 0.94033 1.21674 0.91744 1.45051 0.98093 0.94287 1.25784 0.94736 0.94760 1.01672 1.70023 0.99397 1.48874 1.39203 0.86170 0.78125 0.80056 0.81111 1.18898 1.21307 1.17263 1.20226 0.94081 0.94902 0.95783 1.20936 0.98398 1.00071 0.94492 1.21401 0.97632 0.95116 1.00026 1.21339 1.01566 0.96534 0.96580 1.21306 0.97324 0.99983 0.95302 1.21114 1.00126 0.95383 1.00736 0.90279 0.91487 0.94539 0.90864 0.91641 0.90820 0.76327 0.90875 0.89939 0.93179 0.97470 0.85210 0.92431 0.87147 0.84114 0.83434 0.84119 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 8.49 71.98 0.61 -3.65 16 2 C 0.13 3.30 1.09 -10.79 -0.01 3.28 16 3 C -0.17 -3.11 8.81 71.98 0.63 -2.47 16 4 O -0.58 -15.87 12.31 -148.98 -1.83 -17.70 16 5 C -0.13 -3.68 4.72 30.59 0.14 -3.54 16 6 C 0.07 2.72 4.96 86.30 0.43 3.15 16 7 N -0.68 -27.82 5.81 -499.35 -2.90 -30.73 16 8 C 0.21 9.80 2.15 43.42 0.09 9.89 16 9 H 0.04 2.04 3.98 -2.39 -0.01 2.03 16 10 C -0.53 -29.42 8.60 25.60 0.22 -29.20 16 11 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 12 C 0.03 1.75 5.47 84.66 0.46 2.21 16 13 N -0.94 -57.79 13.96 21.45 0.30 -57.49 16 14 Si 0.92 44.93 27.24 68.60 1.87 46.80 16 15 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 17 H -0.25 -11.62 6.26 99.48 0.62 -11.00 16 18 C -0.05 -2.11 4.93 -19.86 -0.10 -2.21 16 19 C -0.12 -4.65 9.28 22.27 0.21 -4.44 16 20 C -0.12 -3.90 10.05 22.27 0.22 -3.67 16 21 C -0.14 -4.11 10.05 22.27 0.22 -3.89 16 22 C -0.12 -3.86 10.05 22.27 0.22 -3.63 16 23 C -0.15 -6.10 9.67 22.27 0.22 -5.88 16 24 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.04 1.29 6.43 -2.38 -0.02 1.28 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 30 H 0.39 7.53 9.05 -74.06 -0.67 6.86 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.05 2.05 7.49 -2.39 -0.02 2.03 16 34 H 0.01 0.32 6.28 -2.39 -0.01 0.31 16 35 H 0.33 13.59 7.89 -89.69 -0.71 12.88 16 36 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.11 4.21 7.42 -2.91 -0.02 4.19 16 38 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 41 H 0.10 4.07 8.00 -2.91 -0.02 4.05 16 Total: -1.00 -67.39 332.17 0.57 -66.83 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: -0.44 Total: 36.35 kcal Atomic # 6 Polarization: -47.63 SS G_CDS: 3.58 Total: -44.05 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -2.60 Total: -88.22 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -1.83 Total: -17.70 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.87 Total: 46.80 kcal Total: -67.39 0.57 -66.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310334706.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.856 kcal (2) G-P(sol) polarization free energy of solvation -67.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds