Wall clock time and date at job start Mon Mar 30 2020 07:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46959 * 2 1 4 4 O 1.42898 * 109.46970 * 240.00484 * 2 1 3 5 5 C 1.52999 * 109.47421 * 119.99965 * 2 1 3 6 6 C 1.53004 * 109.46783 * 60.00314 * 5 2 1 7 7 N 1.46894 * 109.47029 * 179.97438 * 6 5 2 8 8 C 1.46897 * 111.00139 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.47552 * 325.00280 * 8 7 6 10 10 C 1.50701 * 109.47403 * 85.00120 * 8 7 6 11 11 H 1.07995 * 120.00545 * 234.80643 * 10 8 7 12 12 C 1.37880 * 119.99710 * 54.79502 * 10 8 7 13 13 N 1.31520 * 120.00156 * 2.52728 * 12 10 8 14 14 Si 1.86802 * 120.00014 * 182.52395 * 12 10 8 15 15 H 1.48497 * 109.47044 * 60.00185 * 14 12 10 16 16 H 1.48497 * 109.47129 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46647 * 300.00165 * 14 12 10 18 18 C 1.50701 * 109.47446 * 205.00166 * 8 7 6 19 19 C 1.38239 * 119.99688 * 330.50730 * 18 8 7 20 20 C 1.38241 * 119.99661 * 180.02562 * 19 18 8 21 21 C 1.38235 * 119.99786 * 359.94709 * 20 19 18 22 22 C 1.38232 * 120.00280 * 0.02562 * 21 20 19 23 23 C 1.38231 * 120.00343 * 0.06750 * 22 21 20 24 24 H 1.08994 * 109.46950 * 299.99312 * 1 2 3 25 25 H 1.08996 * 109.47147 * 59.99980 * 1 2 3 26 26 H 1.08997 * 109.46321 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47156 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47207 * 299.99983 * 3 2 1 29 29 H 1.09007 * 109.46575 * 60.00393 * 3 2 1 30 30 H 0.96704 * 113.99842 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.47649 * 300.00295 * 5 2 1 32 32 H 1.09004 * 109.46973 * 179.97438 * 5 2 1 33 33 H 1.09001 * 109.47272 * 59.99914 * 6 5 2 34 34 H 1.08996 * 109.47082 * 300.00015 * 6 5 2 35 35 H 1.00905 * 111.00250 * 303.95505 * 7 6 5 36 36 H 0.96999 * 119.99883 * 179.97438 * 13 12 10 37 37 H 1.07994 * 120.00157 * 359.97272 * 19 18 8 38 38 H 1.07994 * 119.99908 * 179.97438 * 20 19 18 39 39 H 1.08005 * 119.99744 * 179.72611 * 21 20 19 40 40 H 1.08002 * 119.99530 * 179.97438 * 22 21 20 41 41 H 1.07993 * 120.00416 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.0401 -0.7212 1.2492 6 6 1.5301 -2.1638 1.2491 7 7 2.0203 -2.8565 2.4482 8 6 1.5489 -4.2473 2.4824 9 1 0.5467 -4.3019 2.0573 10 6 2.4833 -5.1144 1.6785 11 1 2.0962 -5.7297 0.8798 12 6 3.8325 -5.1219 1.9625 13 7 4.2971 -4.4109 2.9666 14 14 5.0005 -6.1422 0.9212 15 1 4.9336 -5.6848 -0.4900 16 1 6.3864 -5.9804 1.4293 17 1 4.6098 -7.5729 0.9970 18 6 1.5166 -4.7319 3.9090 19 6 2.4042 -4.2157 4.8346 20 6 2.3748 -4.6606 6.1431 21 6 1.4572 -5.6208 6.5262 22 6 0.5693 -6.1366 5.6007 23 6 0.5998 -5.6932 4.2918 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 2.9703 -0.7114 -1.2332 31 1 1.6768 -0.2075 2.1392 32 1 3.1301 -0.7216 1.2489 33 1 1.8935 -2.6776 0.3591 34 1 0.4402 -2.1638 1.2491 35 1 3.0269 -2.8140 2.5042 36 1 5.2463 -4.4165 3.1666 37 1 3.1210 -3.4655 4.5352 38 1 3.0685 -4.2576 6.8661 39 1 1.4372 -5.9716 7.5475 40 1 -0.1474 -6.8871 5.9001 41 1 -0.0936 -6.0964 3.5687 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310334707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:01 Heat of formation + Delta-G solvation = -36.728749 kcal Electronic energy + Delta-G solvation = -20317.202249 eV Core-core repulsion = 17389.361943 eV Total energy + Delta-G solvation = -2927.840306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.45822 -38.03672 -35.38121 -32.94655 -31.70525 -30.41266 -29.64446 -27.83750 -27.22353 -25.83956 -22.86521 -21.79211 -20.91618 -19.91589 -19.68760 -16.61753 -16.20989 -15.65167 -15.18310 -14.94075 -14.59113 -14.05142 -13.73556 -13.69752 -13.14672 -12.78350 -12.40706 -12.28749 -12.10554 -12.05004 -11.86107 -11.60077 -11.53200 -11.34630 -10.98393 -10.89581 -10.76317 -10.63356 -10.35603 -10.13521 -9.94829 -9.63393 -9.55125 -9.41184 -8.67742 -7.75062 -7.38162 -6.97855 -6.03125 -4.30170 2.57351 2.68896 3.22410 3.27248 3.31007 4.29738 4.44766 4.96419 5.04857 5.08442 5.13858 5.19667 5.65358 5.73150 5.76011 5.87324 5.90313 6.00128 6.04839 6.06150 6.13297 6.18823 6.28230 6.37875 6.47515 6.52103 6.74073 6.79683 6.89646 6.96415 7.02013 7.21694 7.35320 7.58827 7.67344 7.83384 7.92585 8.02287 8.10705 8.30481 8.45598 8.86256 9.12643 9.42167 10.81293 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.006641 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.058120 B = 4214.997786 C = 5298.390420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.126 3.874 3 C -0.176 4.176 4 O -0.560 6.560 5 C -0.139 4.139 6 C 0.071 3.929 7 N -0.692 5.692 8 C 0.238 3.762 9 H 0.034 0.966 10 C -0.537 4.537 11 H 0.056 0.944 12 C 0.072 3.928 13 N -0.879 5.879 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.277 1.277 18 C -0.018 4.018 19 C -0.051 4.051 20 C -0.149 4.149 21 C -0.154 4.154 22 C -0.144 4.144 23 C -0.136 4.136 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.373 0.627 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.031 0.969 34 H 0.051 0.949 35 H 0.363 0.637 36 H 0.266 0.734 37 H 0.144 0.856 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.120 7.403 -0.938 8.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.085 3.915 3 C -0.233 4.233 4 O -0.366 6.366 5 C -0.177 4.177 6 C -0.059 4.059 7 N -0.328 5.328 8 C 0.130 3.870 9 H 0.052 0.948 10 C -0.576 4.576 11 H 0.074 0.926 12 C -0.131 4.131 13 N -0.518 5.518 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.202 1.202 18 C -0.019 4.019 19 C -0.070 4.070 20 C -0.167 4.167 21 C -0.172 4.172 22 C -0.163 4.163 23 C -0.154 4.154 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.220 0.780 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.188 0.812 36 H 0.077 0.923 37 H 0.162 0.838 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.070 7.626 -0.557 8.662 hybrid contribution 2.007 -1.174 -0.989 2.527 sum -2.062 6.452 -1.546 6.948 Atomic orbital electron populations 1.21766 0.93102 1.03143 1.01535 1.21215 0.94813 0.90079 0.85390 1.22489 1.01324 0.97311 1.02222 1.86528 1.26448 1.79680 1.43927 1.22221 1.00608 0.97728 0.97152 1.21652 0.98466 0.91977 0.93833 1.60934 1.19910 1.15796 1.36160 1.18055 0.94276 0.86049 0.88658 0.94819 1.21687 0.92423 1.27052 1.16457 0.92557 1.24984 0.98253 0.95264 0.94598 1.69605 1.14376 1.40718 1.27056 0.86634 0.79807 0.80947 0.80567 1.20224 1.21110 1.20244 1.20204 0.92150 0.93390 0.96130 1.21323 0.96209 0.99056 0.90376 1.21086 0.99277 0.99242 0.97084 1.20751 0.98358 0.99915 0.98181 1.20736 1.00227 1.01190 0.94107 1.20839 1.00224 0.99143 0.95211 0.91406 0.92712 0.91289 0.92561 0.92334 0.91745 0.77972 0.91058 0.92333 0.95101 0.93077 0.81235 0.92333 0.83843 0.88202 0.88404 0.88204 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.49 37.16 0.32 -1.51 16 2 C 0.13 1.74 1.09 -90.61 -0.10 1.64 16 3 C -0.18 -1.99 8.82 37.16 0.33 -1.66 16 4 O -0.56 -8.42 12.31 -35.23 -0.43 -8.85 16 5 C -0.14 -2.22 4.72 -26.73 -0.13 -2.35 16 6 C 0.07 1.39 4.98 -3.82 -0.02 1.37 16 7 N -0.69 -15.56 5.39 -109.19 -0.59 -16.15 16 8 C 0.24 5.79 2.50 -70.02 -0.18 5.62 16 9 H 0.03 0.81 7.75 -51.93 -0.40 0.41 16 10 C -0.54 -14.07 8.62 -34.44 -0.30 -14.37 16 11 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 12 C 0.07 1.84 5.06 -17.82 -0.09 1.75 16 13 N -0.88 -22.34 7.97 55.43 0.44 -21.89 16 14 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 16 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 C -0.02 -0.42 4.79 -104.62 -0.50 -0.92 16 19 C -0.05 -1.19 7.66 -39.58 -0.30 -1.50 16 20 C -0.15 -3.12 10.05 -39.58 -0.40 -3.52 16 21 C -0.15 -3.03 10.05 -39.58 -0.40 -3.42 16 22 C -0.14 -2.88 10.05 -39.59 -0.40 -3.28 16 23 C -0.14 -2.98 9.70 -39.58 -0.38 -3.37 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 1.00 6.43 -51.93 -0.33 0.67 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.37 4.57 9.05 45.56 0.41 4.98 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.67 7.54 -51.93 -0.39 0.28 16 34 H 0.05 0.99 6.34 -51.93 -0.33 0.66 16 35 H 0.36 8.69 5.53 -39.29 -0.22 8.48 16 36 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 37 H 0.14 3.51 5.59 -52.49 -0.29 3.21 16 38 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.10 1.64 8.06 -52.48 -0.42 1.21 16 40 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 326.67 15.07 4.92 4.92 Total: -1.00 -27.04 326.67 -8.97 -36.02 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -5.75 Total: 15.94 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -2.54 Total: -25.50 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.15 Total: -38.04 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.43 Total: -8.85 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.04 -8.97 -36.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310334707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.712 kcal (2) G-P(sol) polarization free energy of solvation -27.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds