Wall clock time and date at job start Mon Mar 30 2020 07:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46959 * 2 1 4 4 O 1.42898 * 109.46970 * 240.00484 * 2 1 3 5 5 C 1.52999 * 109.47421 * 119.99965 * 2 1 3 6 6 C 1.53004 * 109.46783 * 60.00314 * 5 2 1 7 7 N 1.46894 * 109.47029 * 179.97438 * 6 5 2 8 8 C 1.46897 * 111.00139 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.47552 * 325.00280 * 8 7 6 10 10 C 1.50701 * 109.47403 * 85.00120 * 8 7 6 11 11 H 1.07995 * 120.00545 * 234.80643 * 10 8 7 12 12 C 1.37880 * 119.99710 * 54.79502 * 10 8 7 13 13 N 1.31520 * 120.00156 * 2.52728 * 12 10 8 14 14 Si 1.86802 * 120.00014 * 182.52395 * 12 10 8 15 15 H 1.48497 * 109.47044 * 60.00185 * 14 12 10 16 16 H 1.48497 * 109.47129 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46647 * 300.00165 * 14 12 10 18 18 C 1.50701 * 109.47446 * 205.00166 * 8 7 6 19 19 C 1.38239 * 119.99688 * 330.50730 * 18 8 7 20 20 C 1.38241 * 119.99661 * 180.02562 * 19 18 8 21 21 C 1.38235 * 119.99786 * 359.94709 * 20 19 18 22 22 C 1.38232 * 120.00280 * 0.02562 * 21 20 19 23 23 C 1.38231 * 120.00343 * 0.06750 * 22 21 20 24 24 H 1.08994 * 109.46950 * 299.99312 * 1 2 3 25 25 H 1.08996 * 109.47147 * 59.99980 * 1 2 3 26 26 H 1.08997 * 109.46321 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47156 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47207 * 299.99983 * 3 2 1 29 29 H 1.09007 * 109.46575 * 60.00393 * 3 2 1 30 30 H 0.96704 * 113.99842 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.47649 * 300.00295 * 5 2 1 32 32 H 1.09004 * 109.46973 * 179.97438 * 5 2 1 33 33 H 1.09001 * 109.47272 * 59.99914 * 6 5 2 34 34 H 1.08996 * 109.47082 * 300.00015 * 6 5 2 35 35 H 1.00905 * 111.00250 * 303.95505 * 7 6 5 36 36 H 0.96999 * 119.99883 * 179.97438 * 13 12 10 37 37 H 1.07994 * 120.00157 * 359.97272 * 19 18 8 38 38 H 1.07994 * 119.99908 * 179.97438 * 20 19 18 39 39 H 1.08005 * 119.99744 * 179.72611 * 21 20 19 40 40 H 1.08002 * 119.99530 * 179.97438 * 22 21 20 41 41 H 1.07993 * 120.00416 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.0401 -0.7212 1.2492 6 6 1.5301 -2.1638 1.2491 7 7 2.0203 -2.8565 2.4482 8 6 1.5489 -4.2473 2.4824 9 1 0.5467 -4.3019 2.0573 10 6 2.4833 -5.1144 1.6785 11 1 2.0962 -5.7297 0.8798 12 6 3.8325 -5.1219 1.9625 13 7 4.2971 -4.4109 2.9666 14 14 5.0005 -6.1422 0.9212 15 1 4.9336 -5.6848 -0.4900 16 1 6.3864 -5.9804 1.4293 17 1 4.6098 -7.5729 0.9970 18 6 1.5166 -4.7319 3.9090 19 6 2.4042 -4.2157 4.8346 20 6 2.3748 -4.6606 6.1431 21 6 1.4572 -5.6208 6.5262 22 6 0.5693 -6.1366 5.6007 23 6 0.5998 -5.6932 4.2918 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 2.9703 -0.7114 -1.2332 31 1 1.6768 -0.2075 2.1392 32 1 3.1301 -0.7216 1.2489 33 1 1.8935 -2.6776 0.3591 34 1 0.4402 -2.1638 1.2491 35 1 3.0269 -2.8140 2.5042 36 1 5.2463 -4.4165 3.1666 37 1 3.1210 -3.4655 4.5352 38 1 3.0685 -4.2576 6.8661 39 1 1.4372 -5.9716 7.5475 40 1 -0.1474 -6.8871 5.9001 41 1 -0.0936 -6.0964 3.5687 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310334707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:01 Heat of formation + Delta-G solvation = -52.881106 kcal Electronic energy + Delta-G solvation = -20317.902667 eV Core-core repulsion = 17389.361943 eV Total energy + Delta-G solvation = -2928.540725 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.97051 -39.41031 -37.09171 -34.46169 -33.28803 -32.00867 -31.29258 -29.37280 -28.24830 -27.61985 -24.59487 -23.40172 -22.49816 -21.54126 -21.01312 -18.50760 -17.64088 -17.12350 -16.91353 -16.27642 -16.00179 -15.66965 -15.35347 -15.24133 -14.62902 -14.33433 -14.02052 -13.66470 -13.61338 -13.37526 -13.19435 -13.09641 -12.87181 -12.77511 -12.63240 -12.55753 -12.37829 -12.17562 -11.95941 -11.71060 -11.40434 -11.36144 -11.25468 -10.76700 -10.56173 -9.42054 -9.10639 -8.82091 -7.95695 -6.31869 0.89244 1.03619 1.36752 1.38849 1.45018 2.37594 3.06696 3.36546 3.40599 3.77964 3.96423 4.04232 4.31729 4.38877 4.40781 4.47862 4.61598 4.65324 4.78385 4.80767 4.87550 4.90476 4.93244 5.04363 5.09000 5.11344 5.24163 5.24687 5.32444 5.39883 5.48527 5.53627 5.63788 5.70846 5.93183 6.08176 6.10462 6.38006 6.51508 6.61470 6.89178 6.97286 7.22482 7.43080 8.83250 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.006641 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.058120 B = 4214.997786 C = 5298.390420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.126 3.874 3 C -0.168 4.168 4 O -0.578 6.578 5 C -0.128 4.128 6 C 0.075 3.925 7 N -0.689 5.689 8 C 0.239 3.761 9 H 0.019 0.981 10 C -0.562 4.562 11 H 0.039 0.961 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.943 3.057 15 H -0.277 1.277 16 H -0.277 1.277 17 H -0.283 1.283 18 C -0.045 4.045 19 C -0.070 4.070 20 C -0.154 4.154 21 C -0.149 4.149 22 C -0.141 4.141 23 C -0.154 4.154 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.383 0.617 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.003 0.997 34 H 0.050 0.950 35 H 0.354 0.646 36 H 0.267 0.733 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.992 7.802 0.232 8.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.085 3.915 3 C -0.226 4.226 4 O -0.386 6.386 5 C -0.166 4.166 6 C -0.055 4.055 7 N -0.324 5.324 8 C 0.129 3.871 9 H 0.037 0.963 10 C -0.601 4.601 11 H 0.057 0.943 12 C -0.161 4.161 13 N -0.518 5.518 14 Si 0.770 3.230 15 H -0.202 1.202 16 H -0.202 1.202 17 H -0.209 1.209 18 C -0.046 4.046 19 C -0.089 4.089 20 C -0.172 4.172 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.172 4.172 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.232 0.768 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.021 0.979 34 H 0.069 0.931 35 H 0.178 0.822 36 H 0.077 0.923 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.943 8.038 0.616 8.975 hybrid contribution 1.917 -1.328 -1.307 2.674 sum -2.026 6.710 -0.691 7.043 Atomic orbital electron populations 1.21803 0.92738 1.02174 1.02960 1.21290 0.95175 0.91295 0.83753 1.22400 1.01736 0.95137 1.03291 1.86506 1.27552 1.80179 1.44346 1.22143 1.00235 0.95351 0.98897 1.21663 0.98366 0.93838 0.91607 1.60970 1.19096 1.15028 1.37281 1.17988 0.93092 0.86710 0.89274 0.96252 1.21790 0.93534 1.27856 1.16941 0.94310 1.25460 0.99005 0.96134 0.95496 1.69723 1.14425 1.40578 1.27091 0.85862 0.78546 0.79255 0.79386 1.20219 1.20214 1.20905 1.20270 0.93644 0.94774 0.95903 1.21232 0.96391 0.99572 0.91674 1.21376 0.99992 0.99419 0.96443 1.21183 0.96963 0.98605 0.99910 1.21133 1.00553 1.01176 0.93029 1.21059 1.00278 0.99163 0.96716 0.89775 0.91525 0.93432 0.91932 0.91360 0.90547 0.76849 0.90420 0.92743 0.97885 0.93136 0.82233 0.92301 0.85591 0.85990 0.84599 0.84789 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 8.49 71.98 0.61 -2.96 16 2 C 0.13 3.37 1.09 -10.79 -0.01 3.35 16 3 C -0.17 -3.44 8.82 71.99 0.63 -2.80 16 4 O -0.58 -17.29 12.31 -148.98 -1.83 -19.12 16 5 C -0.13 -4.10 4.72 30.60 0.14 -3.95 16 6 C 0.08 3.07 4.98 86.31 0.43 3.50 16 7 N -0.69 -32.08 5.39 -499.37 -2.69 -34.78 16 8 C 0.24 12.06 2.50 43.42 0.11 12.17 16 9 H 0.02 0.99 7.75 -2.38 -0.02 0.97 16 10 C -0.56 -30.53 8.62 25.60 0.22 -30.31 16 11 H 0.04 2.16 7.81 -2.91 -0.02 2.14 16 12 C 0.04 2.16 5.06 84.65 0.43 2.58 16 13 N -0.88 -45.24 7.97 21.45 0.17 -45.07 16 14 Si 0.94 42.55 29.54 68.60 2.03 44.57 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 16 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 18 C -0.04 -2.17 4.79 -19.86 -0.10 -2.27 16 19 C -0.07 -3.28 7.66 22.27 0.17 -3.10 16 20 C -0.15 -6.20 10.05 22.27 0.22 -5.97 16 21 C -0.15 -5.37 10.05 22.27 0.22 -5.14 16 22 C -0.14 -5.27 10.05 22.27 0.22 -5.04 16 23 C -0.15 -6.72 9.70 22.27 0.22 -6.50 16 24 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 1.40 6.43 -2.39 -0.02 1.39 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.38 9.34 9.05 -74.05 -0.67 8.67 16 31 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.00 0.13 7.54 -2.39 -0.02 0.11 16 34 H 0.05 2.04 6.34 -2.39 -0.02 2.02 16 35 H 0.35 17.52 5.53 -89.69 -0.50 17.02 16 36 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 37 H 0.13 6.27 5.59 -2.91 -0.02 6.25 16 38 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 39 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 40 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 41 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -58.44 326.67 1.05 -57.39 By element: Atomic # 1 Polarization: 43.60 SS G_CDS: -0.15 Total: 43.45 kcal Atomic # 6 Polarization: -49.98 SS G_CDS: 3.53 Total: -46.45 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -2.52 Total: -79.84 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -1.83 Total: -19.12 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -58.44 1.05 -57.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310334707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.511 kcal (2) G-P(sol) polarization free energy of solvation -58.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds