Wall clock time and date at job start Mon Mar 30 2020 07:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46809 * 2 1 4 4 C 1.53009 * 109.47000 * 119.99488 * 2 1 3 5 5 C 1.52998 * 109.47108 * 300.00077 * 4 2 1 6 6 O 1.42904 * 109.46828 * 180.02562 * 4 2 1 7 7 C 1.52992 * 109.46784 * 60.00533 * 4 2 1 8 8 N 1.46507 * 109.47198 * 184.99656 * 7 4 2 9 9 C 1.39676 * 120.00355 * 179.97438 * 8 7 4 10 10 C 1.39334 * 119.95149 * 359.72517 * 9 8 7 11 11 C 1.38481 * 120.42506 * 180.28020 * 10 9 8 12 12 C 1.37686 * 120.32385 * 359.97438 * 11 10 9 13 13 C 1.40756 * 119.89583 * 359.97438 * 12 11 10 14 14 C 1.41405 * 120.20795 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99572 * 150.19445 * 14 13 12 16 16 C 1.39930 * 120.00279 * 330.19612 * 14 13 12 17 17 N 1.30832 * 120.00038 * 161.72731 * 16 14 13 18 18 Si 1.86798 * 119.99666 * 341.72962 * 16 14 13 19 19 H 1.48509 * 109.47211 * 95.41394 * 18 16 14 20 20 H 1.48500 * 109.46911 * 215.41154 * 18 16 14 21 21 H 1.48494 * 109.47600 * 335.40966 * 18 16 14 22 22 C 1.38282 * 119.95320 * 180.02562 * 9 8 7 23 23 H 1.08991 * 109.47306 * 60.00192 * 1 2 3 24 24 H 1.09002 * 109.47018 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46912 * 300.00166 * 1 2 3 26 26 H 1.08989 * 109.47340 * 239.99498 * 2 1 3 27 27 H 1.09005 * 109.46413 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47002 * 299.99434 * 3 2 1 29 29 H 1.08999 * 109.47115 * 59.99949 * 3 2 1 30 30 H 1.09001 * 109.46552 * 180.02562 * 5 4 2 31 31 H 1.09002 * 109.47339 * 299.99993 * 5 4 2 32 32 H 1.09000 * 109.46857 * 60.00380 * 5 4 2 33 33 H 0.96698 * 114.00037 * 300.00211 * 6 4 2 34 34 H 1.08993 * 109.47637 * 64.99626 * 7 4 2 35 35 H 1.08999 * 109.47201 * 304.99294 * 7 4 2 36 36 H 0.97006 * 119.99442 * 359.97438 * 8 7 4 37 37 H 1.07998 * 119.78671 * 0.25514 * 10 9 8 38 38 H 1.07998 * 119.83992 * 180.02562 * 11 10 9 39 39 H 1.08001 * 120.05084 * 180.02562 * 12 11 10 40 40 H 0.96989 * 119.99850 * 179.97438 * 17 16 14 41 41 H 1.08007 * 120.16031 * 359.69146 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.5300 0.0002 2.4985 6 8 3.4690 -0.7206 1.2496 7 6 1.5301 -2.1636 1.2494 8 7 1.9177 -2.8187 2.5012 9 6 1.5612 -4.1492 2.7328 10 6 0.8321 -4.8508 1.7750 11 6 0.4685 -6.1685 1.9969 12 6 0.8244 -6.8002 3.1674 13 6 1.5619 -6.1045 4.1438 14 6 1.9315 -6.7470 5.3480 15 1 2.8372 -6.4560 5.8594 16 6 1.1238 -7.7598 5.8772 17 7 1.6118 -8.5903 6.7625 18 14 -0.6512 -7.9259 5.3194 19 1 -0.7352 -8.9293 4.2278 20 1 -1.4901 -8.3669 6.4627 21 1 -1.1395 -6.6138 4.8244 22 6 1.9271 -4.7662 3.9150 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8898 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.8937 -0.5134 3.3885 31 1 1.8933 1.0279 2.4985 32 1 0.4400 0.0001 2.4985 33 1 3.8627 -1.1621 0.4847 34 1 1.9647 -2.7027 0.4076 35 1 0.4438 -2.1650 1.1598 36 1 2.4218 -2.3282 3.1693 37 1 0.5483 -4.3638 0.8538 38 1 -0.0963 -6.7036 1.2478 39 1 0.5389 -7.8281 3.3357 40 1 1.0519 -9.2920 7.1295 41 1 2.4924 -4.2234 4.6581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313436116.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:21 Heat of formation + Delta-G solvation = -64.796914 kcal Electronic energy + Delta-G solvation = -19931.448151 eV Core-core repulsion = 17002.390718 eV Total energy + Delta-G solvation = -2929.057433 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.57520 -39.44741 -36.36035 -35.27312 -34.94901 -32.05910 -31.45355 -29.49407 -28.24371 -27.06084 -26.72483 -23.73474 -22.83764 -21.85373 -20.35935 -19.30650 -17.83648 -17.69605 -17.20142 -16.36882 -16.30752 -15.92287 -15.50418 -15.29604 -14.89956 -14.34298 -14.22445 -14.05502 -13.89220 -13.63898 -13.58798 -13.17255 -13.02444 -12.82266 -12.67832 -12.55593 -12.45354 -12.24702 -12.09444 -11.74715 -11.61932 -11.39568 -11.23681 -11.08902 -10.70200 -10.52100 -9.47217 -8.86961 -8.05559 -6.49814 0.86652 1.10824 1.29837 1.44702 1.53728 2.17849 2.65617 2.69437 3.35717 3.62110 3.68150 3.80022 3.90739 4.27534 4.33385 4.37160 4.54575 4.60285 4.66759 4.74342 4.79944 4.85899 4.92626 4.95611 5.01016 5.02919 5.05525 5.10187 5.18066 5.19396 5.25742 5.47321 5.53906 5.55879 5.77840 5.87711 5.99980 6.11446 6.39359 6.71458 6.80903 6.84025 6.92141 7.09211 8.22318 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.037932 B = 0.004221 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.981853 B = 6632.364634 C = 6908.683565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.133 3.867 5 C -0.144 4.144 6 O -0.568 6.568 7 C 0.104 3.896 8 N -0.744 5.744 9 C 0.244 3.756 10 C -0.290 4.290 11 C -0.047 4.047 12 C -0.295 4.295 13 C 0.108 3.892 14 C -0.492 4.492 15 H 0.049 0.951 16 C 0.048 3.952 17 N -0.855 5.855 18 Si 0.973 3.027 19 H -0.258 1.258 20 H -0.279 1.279 21 H -0.255 1.255 22 C -0.300 4.300 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.386 0.614 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.395 0.605 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.092 0.908 40 H 0.293 0.707 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.946 16.812 -14.809 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.130 4.130 3 C -0.198 4.198 4 C 0.092 3.908 5 C -0.201 4.201 6 O -0.376 6.376 7 C -0.021 4.021 8 N -0.376 5.376 9 C 0.141 3.859 10 C -0.313 4.313 11 C -0.065 4.065 12 C -0.315 4.315 13 C 0.105 3.895 14 C -0.522 4.522 15 H 0.068 0.932 16 C -0.166 4.166 17 N -0.482 5.482 18 Si 0.797 3.203 19 H -0.183 1.183 20 H -0.206 1.206 21 H -0.179 1.179 22 C -0.325 4.325 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.236 0.764 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.231 0.769 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.077 17.000 -14.243 22.550 hybrid contribution 0.144 -0.743 0.282 0.808 sum -3.933 16.257 -13.961 21.787 Atomic orbital electron populations 1.22006 0.94011 1.02341 1.02801 1.21650 0.97041 0.97444 0.96863 1.21781 1.01212 0.94757 1.02091 1.21377 0.80805 0.92000 0.96585 1.21862 1.01625 1.00796 0.95841 1.86536 1.19113 1.81166 1.50763 1.22116 1.00266 0.93109 0.86588 1.44567 1.62821 1.09278 1.20907 1.17642 0.91442 0.84484 0.92354 1.20322 1.13418 0.96105 1.01454 1.20768 0.95983 0.94388 0.95403 1.20959 1.13413 0.99551 0.97575 1.17579 0.89008 0.91032 0.91852 1.19459 1.08804 1.16317 1.07596 0.93226 1.26833 1.04622 0.91823 0.93275 1.69737 1.39543 1.13180 1.25757 0.85382 0.76944 0.80444 0.77548 1.18346 1.20626 1.17886 1.20504 1.16821 0.95623 0.99504 0.91256 0.92421 0.92067 0.90014 0.92655 0.91710 0.92544 0.93486 0.90854 0.90056 0.76446 0.92381 0.91255 0.76936 0.85709 0.85502 0.89014 0.89714 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.50 71.98 0.61 -1.45 16 2 C -0.11 -1.57 2.47 -10.79 -0.03 -1.60 16 3 C -0.14 -1.88 8.69 71.98 0.63 -1.26 16 4 C 0.13 2.53 0.53 -10.79 -0.01 2.52 16 5 C -0.14 -2.88 7.91 71.98 0.57 -2.32 16 6 O -0.57 -11.77 12.25 -148.98 -1.83 -13.60 16 7 C 0.10 2.45 3.83 86.38 0.33 2.78 16 8 N -0.74 -23.89 5.36 -339.59 -1.82 -25.71 16 9 C 0.24 10.04 6.64 38.17 0.25 10.29 16 10 C -0.29 -11.32 9.32 22.59 0.21 -11.11 16 11 C -0.05 -1.96 10.02 22.20 0.22 -1.74 16 12 C -0.29 -14.58 7.17 22.75 0.16 -14.42 16 13 C 0.11 5.87 5.10 -21.31 -0.11 5.77 16 14 C -0.49 -29.30 9.57 23.46 0.22 -29.08 16 15 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 16 C 0.05 2.72 5.40 85.25 0.46 3.18 16 17 N -0.86 -49.05 13.93 21.82 0.30 -48.75 16 18 Si 0.97 45.13 24.52 68.60 1.68 46.81 16 19 H -0.26 -11.27 6.71 99.48 0.67 -10.61 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.26 -12.12 6.86 99.48 0.68 -11.44 16 22 C -0.30 -14.79 9.63 22.86 0.22 -14.57 16 23 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 0.84 6.32 -2.39 -0.02 0.82 16 25 H 0.06 0.83 6.43 -2.39 -0.02 0.81 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 0.81 7.68 -2.38 -0.02 0.79 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.78 6.43 -2.39 -0.02 0.76 16 30 H 0.05 1.11 6.58 -2.39 -0.02 1.09 16 31 H 0.07 1.33 6.43 -2.39 -0.02 1.31 16 32 H 0.08 1.48 6.43 -2.39 -0.02 1.47 16 33 H 0.39 5.79 9.05 -74.06 -0.67 5.12 16 34 H 0.06 1.33 7.95 -2.39 -0.02 1.31 16 35 H 0.07 1.61 5.97 -2.39 -0.01 1.59 16 36 H 0.40 12.66 7.00 -92.70 -0.65 12.01 16 37 H 0.13 4.01 6.70 -2.91 -0.02 3.99 16 38 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 39 H 0.09 4.55 4.73 -2.91 -0.01 4.54 16 40 H 0.29 15.02 8.30 -92.72 -0.77 14.25 16 41 H 0.09 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -65.24 316.09 1.75 -63.48 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: -0.34 Total: 30.77 kcal Atomic # 6 Polarization: -56.76 SS G_CDS: 3.75 Total: -53.01 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -1.52 Total: -74.46 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -1.83 Total: -13.60 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.68 Total: 46.81 kcal Total: -65.24 1.75 -63.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313436116.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.312 kcal (2) G-P(sol) polarization free energy of solvation -65.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds