Wall clock time and date at job start Mon Mar 30 2020 06:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50690 * 110.67415 * 2 1 4 4 O 1.21281 * 120.00530 * 242.07080 * 3 2 1 5 5 N 1.34777 * 119.99934 * 62.07149 * 3 2 1 6 6 C 1.46504 * 120.00521 * 185.03241 * 5 3 2 7 7 C 1.52994 * 109.47439 * 184.77893 * 6 5 3 8 8 C 1.50700 * 115.54970 * 294.81509 * 7 6 5 9 9 H 1.07994 * 120.00055 * 95.20340 * 8 7 6 10 10 C 1.37880 * 119.99758 * 274.92121 * 8 7 6 11 11 N 1.31513 * 120.00158 * 355.41791 * 10 8 7 12 12 Si 1.86796 * 120.00013 * 175.41847 * 10 8 7 13 13 H 1.48503 * 109.46965 * 89.99905 * 12 10 8 14 14 H 1.48493 * 109.47709 * 210.00040 * 12 10 8 15 15 H 1.48507 * 109.47257 * 330.00453 * 12 10 8 16 16 C 1.52998 * 117.49873 * 80.48450 * 7 6 5 17 17 C 1.53004 * 117.49797 * 149.14642 * 7 6 5 18 18 C 1.54893 * 110.75407 * 236.76675 * 2 1 3 19 19 C 1.54264 * 104.19602 * 279.44494 * 18 2 1 20 20 H 1.09002 * 117.41220 * 116.37434 * 19 18 2 21 21 C 1.53007 * 118.19982 * 271.00016 * 19 18 2 22 22 C 1.53875 * 106.60085 * 336.39112 * 19 18 2 23 23 H 1.08997 * 121.33108 * 138.63029 * 22 19 18 24 24 C 1.54269 * 106.59875 * 0.02562 * 22 19 18 25 25 H 1.09001 * 109.47207 * 65.36236 * 1 2 3 26 26 H 1.09002 * 109.47748 * 185.35863 * 1 2 3 27 27 H 1.08996 * 109.46936 * 305.35862 * 1 2 3 28 28 H 0.97000 * 120.00108 * 5.03307 * 5 3 2 29 29 H 1.09001 * 109.46668 * 64.77416 * 6 5 3 30 30 H 1.08998 * 109.46657 * 304.78698 * 6 5 3 31 31 H 0.96999 * 120.00350 * 184.99931 * 11 10 8 32 32 H 1.08997 * 117.50008 * 215.00147 * 16 7 6 33 33 H 1.08997 * 117.49824 * 0.02649 * 16 7 6 34 34 H 1.08998 * 117.49631 * 359.97113 * 17 7 6 35 35 H 1.09000 * 117.50004 * 144.97262 * 17 7 6 36 36 H 1.09000 * 110.48673 * 38.12470 * 18 2 1 37 37 H 1.08999 * 110.48772 * 160.63657 * 18 2 1 38 38 H 1.08997 * 117.46058 * 201.21740 * 21 19 18 39 39 H 1.08998 * 117.46014 * 346.01787 * 21 19 18 40 40 H 1.09000 * 110.48442 * 264.93509 * 24 22 19 41 41 H 1.08997 * 110.48765 * 142.28427 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0620 1.4099 0.0000 4 8 2.7364 1.8036 -0.9279 5 7 1.7884 2.2333 1.0313 6 6 2.2111 3.6352 0.9814 7 6 1.8863 4.3135 2.3138 8 6 0.4204 4.4314 2.6429 9 1 -0.0557 3.6854 3.2619 10 6 -0.3115 5.4947 2.1584 11 7 0.2872 6.4528 1.4853 12 14 -2.1536 5.5743 2.4582 13 1 -2.4174 6.2933 3.7305 14 1 -2.8069 6.2963 1.3370 15 1 -2.7010 4.1966 2.5456 16 6 2.8553 4.0878 3.4761 17 6 2.8066 5.4465 2.7725 18 6 2.0789 -0.7938 -1.2115 19 6 1.9834 -2.2693 -0.7717 20 1 1.3166 -2.9196 -1.3378 21 6 3.1734 -2.8809 -0.0294 22 6 1.9860 -2.2704 0.7671 23 1 1.3274 -2.9280 1.3345 24 6 2.0822 -0.7954 1.2087 25 1 -0.3634 0.4284 -0.9341 26 1 -0.3635 -1.0232 0.0960 27 1 -0.3633 0.5947 0.8381 28 1 1.3117 1.8979 1.8066 29 1 1.6831 4.1454 0.1757 30 1 3.2848 3.6847 0.8006 31 1 -0.2132 7.2359 1.2072 32 1 2.4326 4.0246 4.4788 33 1 3.7244 3.4564 3.2914 34 1 3.6437 5.7082 2.1253 35 1 2.3518 6.2772 3.3120 36 1 1.4629 -0.6180 -2.0935 37 1 3.1148 -0.5191 -1.4099 38 1 3.2641 -3.9671 -0.0336 39 1 4.1144 -2.3312 -0.0488 40 1 3.1194 -0.5221 1.4025 41 1 1.4691 -0.6211 2.0928 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352643352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:39 Heat of formation + Delta-G solvation = -2.392897 kcal Electronic energy + Delta-G solvation = -20400.227725 eV Core-core repulsion = 17473.876333 eV Total energy + Delta-G solvation = -2926.351392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37703 -38.19563 -36.60663 -33.55209 -32.75024 -31.95879 -28.29628 -26.89135 -26.46560 -25.26904 -22.91167 -21.19959 -20.68515 -19.72322 -19.46466 -18.52624 -16.68951 -16.10057 -15.86775 -15.04779 -14.78662 -14.52322 -14.06751 -13.80484 -13.34503 -13.13886 -12.75167 -12.63037 -12.14596 -12.03146 -11.75125 -11.56759 -11.52471 -11.26411 -11.01731 -10.98847 -10.92060 -10.70863 -10.53886 -10.23956 -10.02067 -9.73035 -9.56613 -9.10650 -9.05129 -8.50227 -8.24053 -8.08125 -6.08616 -4.18510 3.17679 3.24052 3.32447 3.33412 3.54474 3.85552 4.33579 4.53106 4.57893 4.77559 5.02865 5.11431 5.18698 5.22821 5.33207 5.36232 5.46695 5.54269 5.69698 5.74929 5.87079 5.91394 6.00922 6.05008 6.14276 6.17481 6.21556 6.27105 6.33712 6.43334 6.48478 6.57060 6.70405 6.88262 7.11581 7.30212 7.39000 7.53058 7.79688 8.31861 8.33492 8.82348 8.90049 9.48606 10.98533 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023999 B = 0.005403 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.424567 B = 5181.469203 C = 5636.040034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 C 0.516 3.484 4 O -0.558 6.558 5 N -0.700 5.700 6 C 0.163 3.837 7 C 0.024 3.976 8 C -0.499 4.499 9 H 0.059 0.941 10 C 0.074 3.926 11 N -0.875 5.875 12 Si 0.889 3.111 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.273 1.273 16 C -0.211 4.211 17 C -0.142 4.142 18 C -0.071 4.071 19 C -0.161 4.161 20 H 0.107 0.893 21 C -0.158 4.158 22 C -0.164 4.164 23 H 0.111 0.889 24 C -0.082 4.082 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.400 0.600 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.261 0.739 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.741 -15.042 -0.817 15.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.086 4.086 3 C 0.301 3.699 4 O -0.437 6.437 5 N -0.349 5.349 6 C 0.040 3.960 7 C 0.023 3.977 8 C -0.537 4.537 9 H 0.078 0.922 10 C -0.131 4.131 11 N -0.511 5.511 12 Si 0.717 3.283 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.248 4.248 17 C -0.180 4.180 18 C -0.109 4.109 19 C -0.179 4.179 20 H 0.125 0.875 21 C -0.194 4.194 22 C -0.182 4.182 23 H 0.129 0.871 24 C -0.120 4.120 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.234 0.766 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.145 -14.550 -1.640 14.798 hybrid contribution -1.306 0.093 0.523 1.410 sum 0.839 -14.457 -1.118 14.525 Atomic orbital electron populations 1.21731 0.92031 1.02345 1.02935 1.21902 0.97260 0.92609 0.96844 1.20274 0.80298 0.86763 0.82559 1.90638 1.39734 1.77182 1.36185 1.45976 1.57580 1.11429 1.19866 1.20989 0.96606 0.79002 0.99443 1.19049 0.92240 0.97531 0.88881 1.20334 0.91436 1.09797 1.32100 0.92236 1.24985 0.98146 0.95674 0.94250 1.69989 1.36211 1.07851 1.37004 0.86639 0.85646 0.78262 0.77751 1.20691 1.21186 1.19775 1.23012 1.02138 1.01304 0.98357 1.22463 1.00907 0.91784 1.02885 1.21817 1.02331 0.90442 0.96328 1.23252 1.02116 0.97720 0.94799 0.87481 1.23444 0.93215 0.99770 1.03009 1.23562 1.02703 0.97289 0.94690 0.87103 1.21960 1.01561 0.91742 0.96739 0.92119 0.91685 0.91525 0.76550 0.91590 0.94231 0.92876 0.90408 0.91759 0.91863 0.89535 0.90941 0.90288 0.88641 0.88912 0.90992 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 8.47 37.16 0.31 -1.41 16 2 C -0.08 -1.17 0.76 -153.68 -0.12 -1.29 16 3 C 0.52 9.63 6.51 -10.99 -0.07 9.56 16 4 O -0.56 -12.43 15.77 5.56 0.09 -12.34 16 5 N -0.70 -13.53 5.31 -60.30 -0.32 -13.85 16 6 C 0.16 3.69 5.53 -4.04 -0.02 3.67 16 7 C 0.02 0.55 1.47 -155.66 -0.23 0.33 16 8 C -0.50 -12.68 8.60 -34.44 -0.30 -12.98 16 9 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 10 C 0.07 1.93 5.43 -17.82 -0.10 1.84 16 11 N -0.87 -24.13 12.65 55.43 0.70 -23.42 16 12 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 16 C -0.21 -4.40 9.96 -26.69 -0.27 -4.66 16 17 C -0.14 -3.27 9.14 -26.69 -0.24 -3.51 16 18 C -0.07 -0.95 5.14 -25.07 -0.13 -1.08 16 19 C -0.16 -1.72 6.53 -89.50 -0.58 -2.31 16 20 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 21 C -0.16 -1.55 10.21 -25.42 -0.26 -1.81 16 22 C -0.16 -1.71 6.60 -88.19 -0.58 -2.29 16 23 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 24 C -0.08 -1.00 5.46 -25.08 -0.14 -1.14 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.71 7.53 -51.93 -0.39 0.32 16 27 H 0.07 0.89 7.81 -51.93 -0.41 0.49 16 28 H 0.40 7.13 8.01 -40.82 -0.33 6.81 16 29 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 30 H 0.04 0.90 8.05 -51.93 -0.42 0.48 16 31 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 32 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 36 H 0.07 0.96 8.05 -51.93 -0.42 0.54 16 37 H 0.08 1.19 7.52 -51.93 -0.39 0.80 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 41 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -28.61 335.02 -9.18 -37.79 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -6.96 Total: 8.52 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -2.72 Total: -17.09 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.38 Total: -37.27 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.61 -9.18 -37.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352643352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.399 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds