Wall clock time and date at job start Mon Mar 30 2020 06:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50690 * 110.67415 * 2 1 4 4 O 1.21281 * 120.00530 * 242.07080 * 3 2 1 5 5 N 1.34777 * 119.99934 * 62.07149 * 3 2 1 6 6 C 1.46504 * 120.00521 * 185.03241 * 5 3 2 7 7 C 1.52994 * 109.47439 * 184.77893 * 6 5 3 8 8 C 1.50700 * 115.54970 * 294.81509 * 7 6 5 9 9 H 1.07994 * 120.00055 * 95.20340 * 8 7 6 10 10 C 1.37880 * 119.99758 * 274.92121 * 8 7 6 11 11 N 1.31513 * 120.00158 * 355.41791 * 10 8 7 12 12 Si 1.86796 * 120.00013 * 175.41847 * 10 8 7 13 13 H 1.48503 * 109.46965 * 89.99905 * 12 10 8 14 14 H 1.48493 * 109.47709 * 210.00040 * 12 10 8 15 15 H 1.48507 * 109.47257 * 330.00453 * 12 10 8 16 16 C 1.52998 * 117.49873 * 80.48450 * 7 6 5 17 17 C 1.53004 * 117.49797 * 149.14642 * 7 6 5 18 18 C 1.54893 * 110.75407 * 236.76675 * 2 1 3 19 19 C 1.54264 * 104.19602 * 279.44494 * 18 2 1 20 20 H 1.09002 * 117.41220 * 116.37434 * 19 18 2 21 21 C 1.53007 * 118.19982 * 271.00016 * 19 18 2 22 22 C 1.53875 * 106.60085 * 336.39112 * 19 18 2 23 23 H 1.08997 * 121.33108 * 138.63029 * 22 19 18 24 24 C 1.54269 * 106.59875 * 0.02562 * 22 19 18 25 25 H 1.09001 * 109.47207 * 65.36236 * 1 2 3 26 26 H 1.09002 * 109.47748 * 185.35863 * 1 2 3 27 27 H 1.08996 * 109.46936 * 305.35862 * 1 2 3 28 28 H 0.97000 * 120.00108 * 5.03307 * 5 3 2 29 29 H 1.09001 * 109.46668 * 64.77416 * 6 5 3 30 30 H 1.08998 * 109.46657 * 304.78698 * 6 5 3 31 31 H 0.96999 * 120.00350 * 184.99931 * 11 10 8 32 32 H 1.08997 * 117.50008 * 215.00147 * 16 7 6 33 33 H 1.08997 * 117.49824 * 0.02649 * 16 7 6 34 34 H 1.08998 * 117.49631 * 359.97113 * 17 7 6 35 35 H 1.09000 * 117.50004 * 144.97262 * 17 7 6 36 36 H 1.09000 * 110.48673 * 38.12470 * 18 2 1 37 37 H 1.08999 * 110.48772 * 160.63657 * 18 2 1 38 38 H 1.08997 * 117.46058 * 201.21740 * 21 19 18 39 39 H 1.08998 * 117.46014 * 346.01787 * 21 19 18 40 40 H 1.09000 * 110.48442 * 264.93509 * 24 22 19 41 41 H 1.08997 * 110.48765 * 142.28427 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0620 1.4099 0.0000 4 8 2.7364 1.8036 -0.9279 5 7 1.7884 2.2333 1.0313 6 6 2.2111 3.6352 0.9814 7 6 1.8863 4.3135 2.3138 8 6 0.4204 4.4314 2.6429 9 1 -0.0557 3.6854 3.2619 10 6 -0.3115 5.4947 2.1584 11 7 0.2872 6.4528 1.4853 12 14 -2.1536 5.5743 2.4582 13 1 -2.4174 6.2933 3.7305 14 1 -2.8069 6.2963 1.3370 15 1 -2.7010 4.1966 2.5456 16 6 2.8553 4.0878 3.4761 17 6 2.8066 5.4465 2.7725 18 6 2.0789 -0.7938 -1.2115 19 6 1.9834 -2.2693 -0.7717 20 1 1.3166 -2.9196 -1.3378 21 6 3.1734 -2.8809 -0.0294 22 6 1.9860 -2.2704 0.7671 23 1 1.3274 -2.9280 1.3345 24 6 2.0822 -0.7954 1.2087 25 1 -0.3634 0.4284 -0.9341 26 1 -0.3635 -1.0232 0.0960 27 1 -0.3633 0.5947 0.8381 28 1 1.3117 1.8979 1.8066 29 1 1.6831 4.1454 0.1757 30 1 3.2848 3.6847 0.8006 31 1 -0.2132 7.2359 1.2072 32 1 2.4326 4.0246 4.4788 33 1 3.7244 3.4564 3.2914 34 1 3.6437 5.7082 2.1253 35 1 2.3518 6.2772 3.3120 36 1 1.4629 -0.6180 -2.0935 37 1 3.1148 -0.5191 -1.4099 38 1 3.2641 -3.9671 -0.0336 39 1 4.1144 -2.3312 -0.0488 40 1 3.1194 -0.5221 1.4025 41 1 1.4691 -0.6211 2.0928 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352643352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:39 Heat of formation + Delta-G solvation = -17.736666 kcal Electronic energy + Delta-G solvation = -20400.893081 eV Core-core repulsion = 17473.876333 eV Total energy + Delta-G solvation = -2927.016748 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.59391 -39.55768 -38.36457 -35.10799 -34.06747 -33.82857 -29.30163 -28.25147 -27.87008 -27.17864 -24.11083 -22.93860 -21.82991 -21.29907 -20.58252 -19.96591 -18.26892 -17.57694 -16.99264 -16.70915 -16.54919 -16.10346 -15.62737 -15.07810 -14.74260 -14.52231 -14.19929 -13.89942 -13.57690 -13.36072 -13.16681 -13.03493 -12.93790 -12.81176 -12.52014 -12.36657 -12.23729 -12.03823 -11.94305 -11.78071 -11.39400 -10.96066 -10.86592 -10.75967 -10.49392 -10.43519 -10.01342 -9.84854 -8.09074 -6.23563 1.42532 1.45458 1.53346 1.69409 2.34560 2.43552 2.69590 3.18954 3.42516 3.57143 3.65053 3.83239 4.08038 4.11591 4.18794 4.25612 4.43367 4.47313 4.53073 4.57944 4.63988 4.71735 4.76948 4.84694 4.92799 4.96117 4.98401 5.00915 5.06047 5.15274 5.21043 5.26834 5.29408 5.37151 5.46727 5.54168 5.59672 5.69878 5.78067 6.36315 6.76020 6.84871 7.36304 7.46486 8.98018 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023999 B = 0.005403 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.424567 B = 5181.469203 C = 5636.040034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.078 4.078 3 C 0.511 3.489 4 O -0.600 6.600 5 N -0.695 5.695 6 C 0.179 3.821 7 C 0.003 3.997 8 C -0.502 4.502 9 H 0.066 0.934 10 C 0.024 3.976 11 N -0.909 5.909 12 Si 0.949 3.051 13 H -0.277 1.277 14 H -0.293 1.293 15 H -0.261 1.261 16 C -0.177 4.177 17 C -0.154 4.154 18 C -0.074 4.074 19 C -0.161 4.161 20 H 0.128 0.872 21 C -0.153 4.153 22 C -0.158 4.158 23 H 0.136 0.864 24 C -0.082 4.082 25 H 0.049 0.951 26 H 0.095 0.905 27 H 0.061 0.939 28 H 0.410 0.590 29 H 0.025 0.975 30 H 0.034 0.966 31 H 0.258 0.742 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.120 0.880 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.799 -17.922 0.451 17.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.081 4.081 3 C 0.299 3.701 4 O -0.482 6.482 5 N -0.343 5.343 6 C 0.054 3.946 7 C 0.002 3.998 8 C -0.540 4.540 9 H 0.084 0.916 10 C -0.177 4.177 11 N -0.547 5.547 12 Si 0.775 3.225 13 H -0.203 1.203 14 H -0.220 1.220 15 H -0.185 1.185 16 C -0.214 4.214 17 C -0.192 4.192 18 C -0.112 4.112 19 C -0.179 4.179 20 H 0.145 0.855 21 C -0.190 4.190 22 C -0.175 4.175 23 H 0.153 0.847 24 C -0.120 4.120 25 H 0.068 0.932 26 H 0.113 0.887 27 H 0.080 0.920 28 H 0.246 0.754 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.138 0.862 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.194 -17.462 -0.343 17.506 hybrid contribution -0.940 1.015 0.100 1.387 sum 0.253 -16.448 -0.244 16.451 Atomic orbital electron populations 1.21735 0.90670 1.04079 1.02189 1.21938 0.98099 0.89428 0.98604 1.21200 0.79208 0.88403 0.81313 1.90614 1.41566 1.78388 1.37591 1.45860 1.57691 1.10139 1.20653 1.20552 0.95572 0.80600 0.97840 1.19087 0.92099 0.98513 0.90101 1.20646 0.92479 1.09473 1.31354 0.91628 1.25714 1.02013 0.95607 0.94323 1.70121 1.37612 1.08438 1.38509 0.85689 0.80950 0.78595 0.77257 1.20267 1.21966 1.18496 1.22995 1.01489 0.99291 0.97618 1.22380 1.01076 0.92079 1.03709 1.21790 1.00657 0.92708 0.96047 1.23206 1.03430 0.96009 0.95266 0.85460 1.23544 0.92420 1.01026 1.02029 1.23608 1.03402 0.96246 0.94282 0.84655 1.21967 1.00901 0.92902 0.96184 0.93200 0.88670 0.91961 0.75431 0.95703 0.94811 0.93263 0.89468 0.89618 0.91527 0.91619 0.91281 0.92764 0.86186 0.90100 0.92284 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.47 71.98 0.61 -2.49 16 2 C -0.08 -2.11 0.76 -51.65 -0.04 -2.15 16 3 C 0.51 19.30 6.51 87.65 0.57 19.87 16 4 O -0.60 -27.69 15.77 -3.03 -0.05 -27.73 16 5 N -0.69 -26.90 5.31 -463.07 -2.46 -29.35 16 6 C 0.18 8.31 5.53 86.38 0.48 8.79 16 7 C 0.00 0.13 1.47 -52.93 -0.08 0.05 16 8 C -0.50 -25.33 8.60 25.60 0.22 -25.11 16 9 H 0.07 3.17 7.82 -2.91 -0.02 3.14 16 10 C 0.02 1.26 5.43 84.66 0.46 1.72 16 11 N -0.91 -51.37 12.65 21.45 0.27 -51.10 16 12 Si 0.95 41.71 29.54 68.60 2.03 43.74 16 13 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 14 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 15 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 16 C -0.18 -7.10 9.96 30.62 0.30 -6.79 16 17 C -0.15 -7.14 9.14 30.62 0.28 -6.86 16 18 C -0.07 -1.92 5.14 31.67 0.16 -1.76 16 19 C -0.16 -2.99 6.53 -10.07 -0.07 -3.05 16 20 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 21 C -0.15 -2.56 10.21 31.45 0.32 -2.24 16 22 C -0.16 -2.70 6.60 -9.22 -0.06 -2.76 16 23 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 24 C -0.08 -1.80 5.46 31.66 0.17 -1.63 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.09 1.72 7.53 -2.39 -0.02 1.70 16 27 H 0.06 1.54 7.81 -2.39 -0.02 1.53 16 28 H 0.41 14.20 8.01 -92.71 -0.74 13.46 16 29 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.03 1.58 8.05 -2.39 -0.02 1.56 16 31 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 32 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.07 1.80 8.05 -2.39 -0.02 1.78 16 37 H 0.05 1.66 7.52 -2.39 -0.02 1.65 16 38 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.45 8.04 -2.39 -0.02 1.43 16 41 H 0.09 1.78 8.06 -2.39 -0.02 1.77 16 Total: -1.00 -62.89 335.02 3.38 -59.51 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.26 Total: 29.36 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 3.33 Total: -24.41 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -2.19 Total: -80.46 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.05 Total: -27.73 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -62.89 3.38 -59.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352643352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.769 kcal (2) G-P(sol) polarization free energy of solvation -62.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds