Wall clock time and date at job start Mon Mar 30 2020 06:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50698 * 119.99760 * 2 1 4 4 N 1.46497 * 109.47297 * 123.90528 * 3 2 1 5 5 C 1.46495 * 119.99965 * 275.58401 * 4 3 2 6 6 C 1.50701 * 109.47401 * 90.00034 * 5 4 3 7 7 H 1.07996 * 119.99767 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99982 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99772 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99669 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47053 * 89.99928 * 10 8 6 12 12 H 1.48502 * 109.46779 * 209.99485 * 10 8 6 13 13 H 1.48497 * 109.47101 * 329.99357 * 10 8 6 14 14 C 1.34781 * 119.99935 * 95.58026 * 4 3 2 15 15 O 1.21273 * 119.99854 * 184.21698 * 14 4 3 16 16 C 1.50699 * 119.99709 * 4.21574 * 14 4 3 17 17 C 1.52999 * 110.67466 * 299.74512 * 16 14 4 18 18 C 1.54888 * 110.75166 * 176.51035 * 16 14 4 19 19 C 1.54265 * 104.19614 * 279.62808 * 18 16 14 20 20 H 1.08999 * 117.41193 * 116.37152 * 19 18 16 21 21 C 1.53006 * 118.20064 * 270.99935 * 19 18 16 22 22 C 1.53875 * 106.59786 * 336.39038 * 19 18 16 23 23 H 1.09002 * 121.33113 * 138.63370 * 22 19 18 24 24 C 1.54262 * 106.59962 * 359.97438 * 22 19 18 25 25 H 1.08002 * 119.99657 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00418 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99961 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.46953 * 3.90504 * 3 2 1 29 29 H 1.08998 * 109.46729 * 243.90866 * 3 2 1 30 30 H 1.09005 * 109.46955 * 209.99809 * 5 4 3 31 31 H 1.09004 * 109.47233 * 329.99516 * 5 4 3 32 32 H 0.97004 * 119.99525 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.47393 * 67.62696 * 17 16 14 34 34 H 1.09002 * 109.46901 * 187.62656 * 17 16 14 35 35 H 1.08997 * 109.46842 * 307.62698 * 17 16 14 36 36 H 1.08999 * 110.49057 * 38.30760 * 18 16 14 37 37 H 1.09005 * 110.48712 * 160.95071 * 18 16 14 38 38 H 1.08991 * 117.46406 * 201.21775 * 21 19 18 39 39 H 1.09006 * 117.45813 * 346.04142 * 21 19 18 40 40 H 1.08993 * 110.49148 * 264.93317 * 24 22 19 41 41 H 1.09005 * 110.48054 * 142.28642 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9749 1.3429 1.1463 5 6 2.4847 1.7734 2.4580 6 6 1.9772 0.5776 3.2219 7 1 2.0155 -0.4047 2.7749 8 6 1.4629 0.7380 4.4911 9 7 1.4158 1.9343 5.0352 10 14 0.8331 -0.7442 5.4377 11 1 1.9423 -1.3331 6.2304 12 1 -0.2579 -0.3206 6.3518 13 1 0.3143 -1.7569 4.4836 14 6 4.2644 0.9814 0.9942 15 8 4.9999 0.9391 1.9575 16 6 4.7921 0.6298 -0.3729 17 6 4.0288 -0.5608 -0.9567 18 6 6.3112 0.3331 -0.3152 19 6 6.9692 1.7284 -0.3100 20 1 7.5410 2.0102 0.5741 21 6 7.3041 2.3749 -1.6557 22 6 5.9564 2.6944 -0.9494 23 1 5.7888 3.6913 -0.5418 24 6 4.7186 1.8524 -1.3215 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5401 0.9352 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3572 2.1324 0.0700 29 1 2.6365 1.3937 -0.9229 30 1 3.2972 2.2415 3.0138 31 1 1.6746 2.4907 2.3256 32 1 1.0543 2.0470 5.9283 33 1 3.0010 -0.2655 -1.1674 34 1 4.5105 -0.8838 -1.8797 35 1 4.0314 -1.3812 -0.2391 36 1 6.5596 -0.2092 0.5970 37 1 6.6231 -0.2324 -1.1933 38 1 8.0612 3.1590 -1.6621 39 1 7.2810 1.7371 -2.5394 40 1 4.7735 1.5324 -2.3620 41 1 3.8045 2.4187 -1.1432 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359381825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:42 Heat of formation + Delta-G solvation = 24.470593 kcal Electronic energy + Delta-G solvation = -21068.883884 eV Core-core repulsion = 18143.697381 eV Total energy + Delta-G solvation = -2925.186504 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.55144 -37.81377 -35.73987 -33.49179 -32.68770 -31.94489 -28.36822 -27.40584 -26.87632 -25.49582 -23.43890 -21.56349 -20.76720 -19.75016 -19.66755 -17.85265 -16.47482 -16.33633 -15.66818 -15.44851 -14.63399 -14.29720 -14.18005 -13.65012 -13.17132 -13.05103 -12.83618 -12.55666 -12.33622 -11.96473 -11.87450 -11.61361 -11.27269 -11.18750 -11.05461 -11.00925 -10.79239 -10.59172 -10.55318 -10.27724 -10.12956 -9.84515 -9.58658 -9.54174 -8.89992 -8.66263 -8.36897 -7.61279 -5.98477 -4.01015 2.68531 3.33886 3.39640 3.41503 3.50090 3.70556 4.06767 4.49609 4.58929 4.70544 4.88478 5.10242 5.25536 5.36192 5.36358 5.41134 5.46635 5.50785 5.59128 5.63088 5.66074 5.75614 5.78345 5.90525 5.98088 6.03176 6.08395 6.20659 6.30698 6.35519 6.37221 6.42600 6.51678 7.01455 7.09528 7.20272 7.48111 7.63521 7.98498 8.30736 8.49238 8.97950 9.18422 9.63027 11.10009 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023408 B = 0.006493 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.901971 B = 4311.199007 C = 4820.585996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.125 3.875 4 N -0.592 5.592 5 C 0.248 3.752 6 C -0.513 4.513 7 H 0.057 0.943 8 C 0.059 3.941 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.275 1.275 14 C 0.524 3.476 15 O -0.535 6.535 16 C -0.086 4.086 17 C -0.157 4.157 18 C -0.072 4.072 19 C -0.151 4.151 20 H 0.108 0.892 21 C -0.158 4.158 22 C -0.171 4.171 23 H 0.109 0.891 24 C -0.087 4.087 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.041 0.959 31 H 0.029 0.971 32 H 0.261 0.739 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.560 -1.019 -16.295 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.179 4.179 3 C 0.001 3.999 4 N -0.323 5.323 5 C 0.129 3.871 6 C -0.552 4.552 7 H 0.075 0.925 8 C -0.142 4.142 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.310 3.690 15 O -0.412 6.412 16 C -0.090 4.090 17 C -0.214 4.214 18 C -0.110 4.110 19 C -0.169 4.169 20 H 0.126 0.874 21 C -0.195 4.195 22 C -0.189 4.189 23 H 0.127 0.873 24 C -0.124 4.124 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.127 0.873 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.879 -0.921 -15.570 16.342 hybrid contribution -0.519 -0.806 0.840 1.275 sum 4.360 -1.727 -14.730 15.458 Atomic orbital electron populations 1.23677 0.95870 1.01326 1.00951 1.23376 0.96231 0.98896 0.99421 1.20977 0.93193 0.95527 0.90159 1.48145 1.07848 1.64919 1.11401 1.19254 0.94912 0.95352 0.77572 1.21395 1.39679 0.94125 0.99963 0.92472 1.24915 0.96103 0.95853 0.97341 1.69933 1.46544 1.21414 1.15880 0.86553 0.78428 0.82933 0.79841 1.20679 1.21247 1.19995 1.19946 0.82211 0.77456 0.89406 1.90642 1.57095 1.52234 1.41182 1.21940 0.96564 0.96223 0.94261 1.22350 1.01580 0.96977 1.00503 1.21847 0.91606 0.95160 1.02398 1.23178 1.02511 0.94722 0.96455 0.87367 1.23423 0.97505 1.02720 0.95870 1.23579 0.89636 0.99710 1.05937 0.87337 1.22181 0.97284 0.94534 0.98447 0.89047 0.88782 0.87319 0.90835 0.89342 0.94114 0.95293 0.92890 0.89753 0.92238 0.92045 0.89953 0.91381 0.88826 0.89181 0.90667 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 14.32 29.01 0.42 -2.31 16 2 C -0.16 -2.58 7.83 -36.03 -0.28 -2.86 16 3 C 0.12 2.04 4.76 -5.20 -0.02 2.02 16 4 N -0.59 -12.52 2.44 -176.44 -0.43 -12.95 16 5 C 0.25 6.54 5.17 -5.20 -0.03 6.52 16 6 C -0.51 -14.62 9.10 -34.44 -0.31 -14.93 16 7 H 0.06 1.64 7.78 -52.49 -0.41 1.23 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 9 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 10 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 11 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.52 10.93 6.20 -10.98 -0.07 10.86 16 15 O -0.53 -13.61 15.19 5.56 0.08 -13.53 16 16 C -0.09 -1.32 0.54 -153.65 -0.08 -1.40 16 17 C -0.16 -2.05 7.21 37.16 0.27 -1.78 16 18 C -0.07 -1.06 5.25 -25.07 -0.13 -1.19 16 19 C -0.15 -2.13 6.53 -89.50 -0.58 -2.71 16 20 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 21 C -0.16 -1.76 10.21 -25.42 -0.26 -2.02 16 22 C -0.17 -2.28 6.86 -88.19 -0.61 -2.88 16 23 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 24 C -0.09 -1.12 4.73 -25.06 -0.12 -1.24 16 25 H 0.09 1.26 8.06 -52.49 -0.42 0.84 16 26 H 0.09 1.36 7.84 -52.49 -0.41 0.94 16 27 H 0.11 1.74 6.36 -52.49 -0.33 1.41 16 28 H 0.07 1.17 7.62 -51.93 -0.40 0.78 16 29 H 0.09 1.18 3.17 -51.93 -0.16 1.02 16 30 H 0.04 1.22 7.48 -51.93 -0.39 0.83 16 31 H 0.03 0.78 7.95 -51.93 -0.41 0.36 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.08 1.05 3.33 -51.93 -0.17 0.88 16 34 H 0.06 0.62 8.01 -51.93 -0.42 0.21 16 35 H 0.06 0.88 8.02 -51.93 -0.42 0.47 16 36 H 0.08 1.38 7.41 -51.93 -0.38 1.00 16 37 H 0.07 0.82 7.95 -51.93 -0.41 0.41 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 41 H 0.08 1.05 5.67 -51.93 -0.29 0.76 16 LS Contribution 321.51 15.07 4.85 4.85 Total: -1.00 -32.67 321.51 -7.98 -40.64 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.28 Total: 2.34 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -1.91 Total: -12.32 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.31 Total: -39.27 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.08 Total: -13.53 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.67 -7.98 -40.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359381825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.115 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds