Wall clock time and date at job start Mon Mar 30 2020 06:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50698 * 119.99760 * 2 1 4 4 N 1.46497 * 109.47297 * 123.90528 * 3 2 1 5 5 C 1.46495 * 119.99965 * 275.58401 * 4 3 2 6 6 C 1.50701 * 109.47401 * 90.00034 * 5 4 3 7 7 H 1.07996 * 119.99767 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99982 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99772 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99669 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47053 * 89.99928 * 10 8 6 12 12 H 1.48502 * 109.46779 * 209.99485 * 10 8 6 13 13 H 1.48497 * 109.47101 * 329.99357 * 10 8 6 14 14 C 1.34781 * 119.99935 * 95.58026 * 4 3 2 15 15 O 1.21273 * 119.99854 * 184.21698 * 14 4 3 16 16 C 1.50699 * 119.99709 * 4.21574 * 14 4 3 17 17 C 1.52999 * 110.67466 * 299.74512 * 16 14 4 18 18 C 1.54888 * 110.75166 * 176.51035 * 16 14 4 19 19 C 1.54265 * 104.19614 * 279.62808 * 18 16 14 20 20 H 1.08999 * 117.41193 * 116.37152 * 19 18 16 21 21 C 1.53006 * 118.20064 * 270.99935 * 19 18 16 22 22 C 1.53875 * 106.59786 * 336.39038 * 19 18 16 23 23 H 1.09002 * 121.33113 * 138.63370 * 22 19 18 24 24 C 1.54262 * 106.59962 * 359.97438 * 22 19 18 25 25 H 1.08002 * 119.99657 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00418 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99961 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.46953 * 3.90504 * 3 2 1 29 29 H 1.08998 * 109.46729 * 243.90866 * 3 2 1 30 30 H 1.09005 * 109.46955 * 209.99809 * 5 4 3 31 31 H 1.09004 * 109.47233 * 329.99516 * 5 4 3 32 32 H 0.97004 * 119.99525 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.47393 * 67.62696 * 17 16 14 34 34 H 1.09002 * 109.46901 * 187.62656 * 17 16 14 35 35 H 1.08997 * 109.46842 * 307.62698 * 17 16 14 36 36 H 1.08999 * 110.49057 * 38.30760 * 18 16 14 37 37 H 1.09005 * 110.48712 * 160.95071 * 18 16 14 38 38 H 1.08991 * 117.46406 * 201.21775 * 21 19 18 39 39 H 1.09006 * 117.45813 * 346.04142 * 21 19 18 40 40 H 1.08993 * 110.49148 * 264.93317 * 24 22 19 41 41 H 1.09005 * 110.48054 * 142.28642 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9749 1.3429 1.1463 5 6 2.4847 1.7734 2.4580 6 6 1.9772 0.5776 3.2219 7 1 2.0155 -0.4047 2.7749 8 6 1.4629 0.7380 4.4911 9 7 1.4158 1.9343 5.0352 10 14 0.8331 -0.7442 5.4377 11 1 1.9423 -1.3331 6.2304 12 1 -0.2579 -0.3206 6.3518 13 1 0.3143 -1.7569 4.4836 14 6 4.2644 0.9814 0.9942 15 8 4.9999 0.9391 1.9575 16 6 4.7921 0.6298 -0.3729 17 6 4.0288 -0.5608 -0.9567 18 6 6.3112 0.3331 -0.3152 19 6 6.9692 1.7284 -0.3100 20 1 7.5410 2.0102 0.5741 21 6 7.3041 2.3749 -1.6557 22 6 5.9564 2.6944 -0.9494 23 1 5.7888 3.6913 -0.5418 24 6 4.7186 1.8524 -1.3215 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5401 0.9352 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3572 2.1324 0.0700 29 1 2.6365 1.3937 -0.9229 30 1 3.2972 2.2415 3.0138 31 1 1.6746 2.4907 2.3256 32 1 1.0543 2.0470 5.9283 33 1 3.0010 -0.2655 -1.1674 34 1 4.5105 -0.8838 -1.8797 35 1 4.0314 -1.3812 -0.2391 36 1 6.5596 -0.2092 0.5970 37 1 6.6231 -0.2324 -1.1933 38 1 8.0612 3.1590 -1.6621 39 1 7.2810 1.7371 -2.5394 40 1 4.7735 1.5324 -2.3620 41 1 3.8045 2.4187 -1.1432 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359381825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:41 Heat of formation + Delta-G solvation = 5.243284 kcal Electronic energy + Delta-G solvation = -21069.717643 eV Core-core repulsion = 18143.697381 eV Total energy + Delta-G solvation = -2926.020262 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.89201 -39.19409 -37.35782 -35.27038 -34.07598 -33.65721 -29.82662 -29.00141 -27.95867 -26.93316 -25.41042 -22.72608 -22.15152 -21.03015 -20.78627 -19.29999 -18.62263 -17.69598 -17.29890 -16.73901 -16.41382 -15.91005 -15.49827 -14.98131 -14.69447 -14.35347 -14.20525 -13.99243 -13.59539 -13.39194 -13.33487 -13.09464 -12.91440 -12.72989 -12.59121 -12.47923 -12.23113 -12.18578 -12.15334 -11.70786 -11.58256 -11.35075 -10.88695 -10.70265 -10.65129 -10.24150 -10.14806 -9.42729 -8.20902 -6.32971 1.33274 1.36160 1.40752 1.46281 1.92098 2.34135 2.52568 2.69427 3.08777 3.51519 3.59604 3.69391 3.98312 4.10385 4.20200 4.29777 4.32889 4.38786 4.46311 4.50817 4.52266 4.75854 4.77781 4.88541 4.92371 4.95589 5.01308 5.04268 5.11998 5.20656 5.23855 5.25650 5.29729 5.41089 5.42288 5.58088 5.77691 5.81413 6.03745 6.10140 6.73063 6.83607 7.31352 7.54236 8.86619 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023408 B = 0.006493 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.901971 B = 4311.199007 C = 4820.585996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.178 4.178 3 C 0.121 3.879 4 N -0.596 5.596 5 C 0.264 3.736 6 C -0.522 4.522 7 H 0.052 0.948 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.961 3.039 11 H -0.283 1.283 12 H -0.275 1.275 13 H -0.261 1.261 14 C 0.513 3.487 15 O -0.596 6.596 16 C -0.081 4.081 17 C -0.153 4.153 18 C -0.069 4.069 19 C -0.181 4.181 20 H 0.079 0.921 21 C -0.117 4.117 22 C -0.187 4.187 23 H 0.094 0.906 24 C -0.080 4.080 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.126 0.874 30 H -0.009 1.009 31 H 0.019 0.981 32 H 0.265 0.735 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.023 -2.327 -19.495 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.197 4.197 3 C 0.000 4.000 4 N -0.326 5.326 5 C 0.143 3.857 6 C -0.561 4.561 7 H 0.070 0.930 8 C -0.193 4.193 9 N -0.572 5.572 10 Si 0.786 3.214 11 H -0.210 1.210 12 H -0.200 1.200 13 H -0.186 1.186 14 C 0.302 3.698 15 O -0.477 6.477 16 C -0.084 4.084 17 C -0.210 4.210 18 C -0.107 4.107 19 C -0.200 4.200 20 H 0.097 0.903 21 C -0.153 4.153 22 C -0.205 4.205 23 H 0.112 0.888 24 C -0.117 4.117 25 H 0.125 0.875 26 H 0.118 0.882 27 H 0.128 0.872 28 H 0.094 0.906 29 H 0.143 0.857 30 H 0.009 0.991 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.319 -2.230 -18.822 19.439 hybrid contribution -0.329 -0.336 1.874 1.932 sum 3.990 -2.565 -16.948 17.599 Atomic orbital electron populations 1.23914 0.95675 1.02397 0.99055 1.23363 0.96667 0.98552 1.01086 1.21291 0.93052 0.96109 0.89561 1.48128 1.09051 1.64565 1.10829 1.18688 0.92565 0.94473 0.80014 1.21602 1.39630 0.94277 1.00592 0.92987 1.25813 0.96311 0.98819 0.98357 1.70055 1.47276 1.23540 1.16358 0.85506 0.77888 0.79445 0.78552 1.20959 1.19996 1.18558 1.21126 0.81415 0.75853 0.91408 1.90604 1.58504 1.54676 1.43893 1.21956 0.96990 0.98490 0.90958 1.22367 1.02120 0.95077 1.01454 1.21842 0.91151 0.95398 1.02270 1.23151 1.03959 0.95020 0.97841 0.90250 1.23535 0.95462 1.01855 0.94465 1.23684 0.90901 0.98939 1.06957 0.88774 1.22213 0.96786 0.92942 0.99770 0.87508 0.88237 0.87227 0.90643 0.85714 0.99090 0.96281 0.92622 0.89007 0.88191 0.94041 0.93531 0.87651 0.87500 0.86321 0.86442 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.86 14.32 67.77 0.97 -3.89 16 2 C -0.18 -5.44 7.83 25.64 0.20 -5.23 16 3 C 0.12 3.85 4.76 85.63 0.41 4.26 16 4 N -0.60 -25.92 2.44 -830.52 -2.03 -27.94 16 5 C 0.26 14.67 5.17 85.63 0.44 15.11 16 6 C -0.52 -30.69 9.10 25.60 0.23 -30.46 16 7 H 0.05 3.05 7.78 -2.91 -0.02 3.02 16 8 C 0.01 0.30 5.46 84.66 0.46 0.77 16 9 N -0.93 -57.78 13.29 21.45 0.28 -57.49 16 10 Si 0.96 46.21 29.54 68.60 2.03 48.23 16 11 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 14 C 0.51 22.15 6.20 87.66 0.54 22.69 16 15 O -0.60 -32.52 15.19 -3.01 -0.05 -32.57 16 16 C -0.08 -2.35 0.54 -51.63 -0.03 -2.38 16 17 C -0.15 -3.55 7.21 71.98 0.52 -3.03 16 18 C -0.07 -1.94 5.25 31.67 0.17 -1.78 16 19 C -0.18 -5.06 6.53 -10.07 -0.07 -5.13 16 20 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 21 C -0.12 -2.19 10.21 31.45 0.32 -1.87 16 22 C -0.19 -4.69 6.86 -9.22 -0.06 -4.75 16 23 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 24 C -0.08 -1.81 4.73 31.68 0.15 -1.66 16 25 H 0.11 2.67 8.06 -2.91 -0.02 2.64 16 26 H 0.10 2.67 7.84 -2.91 -0.02 2.65 16 27 H 0.11 3.34 6.36 -2.91 -0.02 3.32 16 28 H 0.08 2.35 7.62 -2.39 -0.02 2.33 16 29 H 0.13 3.00 3.17 -2.39 -0.01 2.99 16 30 H -0.01 -0.58 7.48 -2.38 -0.02 -0.60 16 31 H 0.02 1.08 7.95 -2.39 -0.02 1.06 16 32 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.09 1.98 3.33 -2.39 -0.01 1.97 16 34 H 0.10 1.55 8.01 -2.39 -0.02 1.53 16 35 H 0.04 1.13 8.02 -2.39 -0.02 1.11 16 36 H 0.05 1.63 7.41 -2.39 -0.02 1.61 16 37 H 0.11 2.14 7.95 -2.38 -0.02 2.13 16 38 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.12 1.75 8.05 -2.39 -0.02 1.73 16 41 H 0.08 1.82 5.67 -2.38 -0.01 1.81 16 Total: -1.00 -76.26 321.51 5.50 -70.75 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 1.01 Total: 16.37 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 4.26 Total: -17.35 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -1.74 Total: -85.44 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.05 Total: -32.57 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -76.26 5.50 -70.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359381825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.997 kcal (2) G-P(sol) polarization free energy of solvation -76.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds