Wall clock time and date at job start Mon Mar 30 2020 07:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46985 * 2 1 4 4 C 1.50694 * 109.46856 * 180.02562 * 3 2 1 5 5 C 1.38133 * 120.03827 * 265.25519 * 4 3 2 6 6 C 1.38263 * 120.07477 * 180.28066 * 5 4 3 7 7 C 1.38306 * 120.15356 * 359.73697 * 6 5 4 8 8 C 1.38090 * 120.07214 * 359.97438 * 7 6 5 9 9 C 1.38893 * 120.04446 * 85.00225 * 4 3 2 10 10 N 1.39682 * 120.06884 * 0.02562 * 9 4 3 11 11 C 1.46498 * 119.99669 * 179.72495 * 10 9 4 12 12 C 1.53006 * 109.46687 * 179.97438 * 11 10 9 13 13 O 1.42895 * 109.47036 * 65.00210 * 12 11 10 14 14 C 1.42901 * 113.99948 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47372 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99889 * 0.02562 * 15 14 13 17 17 C 1.37868 * 120.00134 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00542 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00126 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46973 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47148 * 120.00114 * 19 17 15 22 22 H 1.48497 * 109.47029 * 240.00498 * 19 17 15 23 23 H 1.08997 * 109.47533 * 60.00019 * 1 2 3 24 24 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47086 * 299.99837 * 1 2 3 26 26 H 1.09004 * 109.46738 * 240.00857 * 2 1 3 27 27 H 1.08997 * 109.47533 * 119.99980 * 2 1 3 28 28 H 1.08992 * 109.46838 * 60.00527 * 3 2 1 29 29 H 1.08997 * 109.46969 * 300.00326 * 3 2 1 30 30 H 1.08005 * 119.96065 * 0.02562 * 5 4 3 31 31 H 1.08002 * 119.92360 * 179.77161 * 6 5 4 32 32 H 1.07999 * 119.96567 * 179.97438 * 7 6 5 33 33 H 1.07993 * 120.03755 * 180.02562 * 8 7 6 34 34 H 0.97004 * 119.99779 * 359.72560 * 10 9 4 35 35 H 1.08992 * 109.47311 * 60.00116 * 11 10 9 36 36 H 1.08997 * 109.46828 * 299.99760 * 11 10 9 37 37 H 1.09001 * 109.47002 * 184.99687 * 12 11 10 38 38 H 1.08993 * 109.46955 * 305.00124 * 12 11 10 39 39 H 1.08995 * 109.47392 * 299.99575 * 14 13 12 40 40 H 1.09003 * 109.47182 * 59.99587 * 14 13 12 41 41 H 0.96998 * 120.00821 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4425 -0.0006 5 6 4.2389 1.5413 1.1908 6 6 5.6215 1.5471 1.1906 7 6 6.3165 1.4488 -0.0011 8 6 5.6310 1.3438 -1.1953 9 6 4.2418 1.3380 -1.1987 10 7 3.5453 1.2332 -2.4049 11 6 4.2798 1.1290 -3.6682 12 6 3.2873 1.0264 -4.8281 13 8 2.5400 2.2405 -4.9244 14 6 1.5796 2.2496 -5.9825 15 6 0.8532 3.5700 -5.9905 16 1 1.1006 4.3267 -5.2607 17 6 -0.1263 3.8123 -6.9300 18 7 -0.4272 2.8910 -7.8190 19 14 -1.0261 5.4493 -6.9403 20 1 -0.5058 6.3070 -5.8454 21 1 -0.8095 6.1250 -8.2447 22 1 -2.4788 5.2168 -6.7384 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8932 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.6992 1.6181 2.1232 31 1 6.1600 1.6281 2.1233 32 1 7.3965 1.4541 0.0023 33 1 6.1743 1.2667 -2.1254 34 1 2.5752 1.2294 -2.4061 35 1 4.9099 0.2399 -3.6498 36 1 4.9031 2.0134 -3.7999 37 1 3.8312 0.8599 -5.7580 38 1 2.6066 0.1938 -4.6512 39 1 2.0883 2.1087 -6.9361 40 1 0.8633 1.4422 -5.8301 41 1 -1.1166 3.0613 -8.4797 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385270137.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:45 Heat of formation + Delta-G solvation = -45.883533 kcal Electronic energy + Delta-G solvation = -19426.975564 eV Core-core repulsion = 16498.738277 eV Total energy + Delta-G solvation = -2928.237287 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.64437 -37.15620 -35.18059 -34.91900 -32.76354 -31.01109 -30.31556 -27.90534 -26.75257 -26.09626 -23.07093 -22.35219 -21.97314 -20.93719 -20.51529 -17.32666 -16.53094 -16.16015 -15.79365 -15.47732 -14.78287 -14.59110 -14.34329 -13.99550 -13.84559 -13.59908 -13.49739 -13.08938 -12.98321 -12.30254 -12.12216 -11.94066 -11.78204 -11.50897 -11.14613 -11.09587 -10.86811 -10.86339 -10.73292 -10.57391 -10.55279 -10.08977 -9.87853 -9.16520 -8.93636 -8.61556 -8.27423 -7.14390 -6.16656 -4.18748 1.55224 1.79822 3.25734 3.32556 3.38995 3.68180 4.00714 4.29319 4.73853 4.85530 4.92751 5.10117 5.16008 5.20160 5.21630 5.31589 5.40429 5.48853 5.52613 5.65702 5.76541 5.79075 5.86948 5.90488 5.94801 5.97228 6.06570 6.14914 6.17663 6.24450 6.36850 6.51589 6.67669 6.77382 6.99566 7.04486 7.33313 7.56638 7.73538 7.98465 8.07332 8.46641 8.94277 9.46653 10.94811 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.004227 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.913649 B = 6623.228820 C = 7204.630087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.075 4.075 4 C -0.161 4.161 5 C -0.071 4.071 6 C -0.189 4.189 7 C -0.077 4.077 8 C -0.202 4.202 9 C 0.229 3.771 10 N -0.733 5.733 11 C 0.129 3.871 12 C 0.049 3.951 13 O -0.393 6.393 14 C 0.195 3.805 15 C -0.515 4.515 16 H 0.067 0.933 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.907 3.093 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.406 0.594 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.043 0.957 39 H 0.006 0.994 40 H 0.005 0.995 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.724 -6.425 15.435 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.113 4.113 4 C -0.166 4.166 5 C -0.090 4.090 6 C -0.210 4.210 7 C -0.096 4.096 8 C -0.225 4.225 9 C 0.123 3.877 10 N -0.363 5.363 11 C 0.004 3.996 12 C -0.029 4.029 13 O -0.313 6.313 14 C 0.120 3.880 15 C -0.553 4.553 16 H 0.085 0.915 17 C -0.144 4.144 18 N -0.537 5.537 19 Si 0.734 3.266 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.243 0.757 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.729 -6.314 15.183 18.617 hybrid contribution -0.867 0.553 -0.447 1.122 sum 7.862 -5.761 14.736 17.668 Atomic orbital electron populations 1.21808 0.95774 1.01542 1.02102 1.21507 0.95550 0.96404 1.02052 1.20457 0.91013 0.97036 1.02787 1.19348 0.95361 1.09981 0.91893 1.20727 0.94009 0.97756 0.96500 1.20771 0.94124 1.08423 0.97638 1.20810 0.99071 0.97518 0.92163 1.20611 0.92170 1.11147 0.98610 1.17723 0.91285 0.92819 0.85841 1.44831 1.08811 1.79998 1.02626 1.21402 0.94538 1.00935 0.82718 1.22474 0.94130 0.89830 0.96445 1.87901 1.53628 1.33801 1.55947 1.20231 0.85725 0.97756 0.84239 1.21074 1.18790 1.00041 1.15442 0.91504 1.24941 0.96761 0.97669 0.95039 1.69964 1.32023 1.33820 1.17917 0.86291 0.79244 0.82957 0.78090 1.19455 1.20782 1.20792 0.92238 0.92897 0.92875 0.92042 0.92173 0.91246 0.91113 0.86684 0.86993 0.86726 0.86354 0.75714 0.91676 0.91637 0.92861 0.93927 0.97625 0.97678 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.16 0.37 -1.28 16 2 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 3 C -0.08 -0.93 4.78 -27.88 -0.13 -1.06 16 4 C -0.16 -2.15 5.15 -104.42 -0.54 -2.69 16 5 C -0.07 -0.86 9.68 -39.61 -0.38 -1.24 16 6 C -0.19 -2.19 10.04 -39.55 -0.40 -2.59 16 7 C -0.08 -0.91 10.04 -39.61 -0.40 -1.31 16 8 C -0.20 -2.69 9.31 -39.38 -0.37 -3.05 16 9 C 0.23 3.29 6.63 -83.78 -0.56 2.73 16 10 N -0.73 -11.02 5.58 -58.63 -0.33 -11.35 16 11 C 0.13 1.87 5.30 -4.04 -0.02 1.85 16 12 C 0.05 0.86 6.07 37.16 0.23 1.08 16 13 O -0.39 -9.10 10.27 -35.23 -0.36 -9.46 16 14 C 0.19 5.21 5.69 36.01 0.20 5.42 16 15 C -0.52 -14.98 9.43 -34.44 -0.32 -15.31 16 16 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 19 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 29 H 0.07 0.98 6.82 -51.93 -0.35 0.62 16 30 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 31 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.12 1.44 6.73 -52.49 -0.35 1.09 16 34 H 0.41 6.40 6.58 -40.82 -0.27 6.13 16 35 H 0.07 0.79 7.95 -51.93 -0.41 0.37 16 36 H 0.07 0.98 7.95 -51.93 -0.41 0.57 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 341.07 15.07 5.14 5.14 Total: -1.00 -30.51 341.07 -9.25 -39.76 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.84 Total: 2.48 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -2.57 Total: -17.41 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.41 Total: -37.17 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.36 Total: -9.46 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.51 -9.25 -39.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385270137.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.124 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds