Wall clock time and date at job start Mon Mar 30 2020 07:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46985 * 2 1 4 4 C 1.50694 * 109.46856 * 180.02562 * 3 2 1 5 5 C 1.38133 * 120.03827 * 265.25519 * 4 3 2 6 6 C 1.38263 * 120.07477 * 180.28066 * 5 4 3 7 7 C 1.38306 * 120.15356 * 359.73697 * 6 5 4 8 8 C 1.38090 * 120.07214 * 359.97438 * 7 6 5 9 9 C 1.38893 * 120.04446 * 85.00225 * 4 3 2 10 10 N 1.39682 * 120.06884 * 0.02562 * 9 4 3 11 11 C 1.46498 * 119.99669 * 179.72495 * 10 9 4 12 12 C 1.53006 * 109.46687 * 179.97438 * 11 10 9 13 13 O 1.42895 * 109.47036 * 65.00210 * 12 11 10 14 14 C 1.42901 * 113.99948 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47372 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99889 * 0.02562 * 15 14 13 17 17 C 1.37868 * 120.00134 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00542 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00126 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46973 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47148 * 120.00114 * 19 17 15 22 22 H 1.48497 * 109.47029 * 240.00498 * 19 17 15 23 23 H 1.08997 * 109.47533 * 60.00019 * 1 2 3 24 24 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47086 * 299.99837 * 1 2 3 26 26 H 1.09004 * 109.46738 * 240.00857 * 2 1 3 27 27 H 1.08997 * 109.47533 * 119.99980 * 2 1 3 28 28 H 1.08992 * 109.46838 * 60.00527 * 3 2 1 29 29 H 1.08997 * 109.46969 * 300.00326 * 3 2 1 30 30 H 1.08005 * 119.96065 * 0.02562 * 5 4 3 31 31 H 1.08002 * 119.92360 * 179.77161 * 6 5 4 32 32 H 1.07999 * 119.96567 * 179.97438 * 7 6 5 33 33 H 1.07993 * 120.03755 * 180.02562 * 8 7 6 34 34 H 0.97004 * 119.99779 * 359.72560 * 10 9 4 35 35 H 1.08992 * 109.47311 * 60.00116 * 11 10 9 36 36 H 1.08997 * 109.46828 * 299.99760 * 11 10 9 37 37 H 1.09001 * 109.47002 * 184.99687 * 12 11 10 38 38 H 1.08993 * 109.46955 * 305.00124 * 12 11 10 39 39 H 1.08995 * 109.47392 * 299.99575 * 14 13 12 40 40 H 1.09003 * 109.47182 * 59.99587 * 14 13 12 41 41 H 0.96998 * 120.00821 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4425 -0.0006 5 6 4.2389 1.5413 1.1908 6 6 5.6215 1.5471 1.1906 7 6 6.3165 1.4488 -0.0011 8 6 5.6310 1.3438 -1.1953 9 6 4.2418 1.3380 -1.1987 10 7 3.5453 1.2332 -2.4049 11 6 4.2798 1.1290 -3.6682 12 6 3.2873 1.0264 -4.8281 13 8 2.5400 2.2405 -4.9244 14 6 1.5796 2.2496 -5.9825 15 6 0.8532 3.5700 -5.9905 16 1 1.1006 4.3267 -5.2607 17 6 -0.1263 3.8123 -6.9300 18 7 -0.4272 2.8910 -7.8190 19 14 -1.0261 5.4493 -6.9403 20 1 -0.5058 6.3070 -5.8454 21 1 -0.8095 6.1250 -8.2447 22 1 -2.4788 5.2168 -6.7384 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8932 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.6992 1.6181 2.1232 31 1 6.1600 1.6281 2.1233 32 1 7.3965 1.4541 0.0023 33 1 6.1743 1.2667 -2.1254 34 1 2.5752 1.2294 -2.4061 35 1 4.9099 0.2399 -3.6498 36 1 4.9031 2.0134 -3.7999 37 1 3.8312 0.8599 -5.7580 38 1 2.6066 0.1938 -4.6512 39 1 2.0883 2.1087 -6.9361 40 1 0.8633 1.4422 -5.8301 41 1 -1.1166 3.0613 -8.4797 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385270137.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:44 Heat of formation + Delta-G solvation = -62.824835 kcal Electronic energy + Delta-G solvation = -19427.710194 eV Core-core repulsion = 16498.738277 eV Total energy + Delta-G solvation = -2928.971917 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63893 -38.81414 -36.36681 -35.94000 -34.88653 -31.99741 -31.53203 -29.50217 -28.34195 -27.06835 -24.65200 -24.10871 -22.92354 -22.02316 -21.49685 -18.74164 -18.26468 -17.57844 -17.31323 -16.66901 -16.42788 -15.98426 -15.58099 -15.13564 -15.04177 -14.80738 -14.60049 -14.43431 -14.18469 -13.68934 -13.35762 -13.24461 -13.00371 -12.87145 -12.74368 -12.67667 -12.41564 -12.05930 -12.01792 -11.93422 -11.52952 -11.50572 -11.31971 -10.95098 -10.88377 -10.29945 -9.56327 -8.35419 -8.19717 -6.47610 0.60003 0.82789 1.38226 1.38931 1.53672 2.31740 2.55973 2.98785 3.04306 3.11500 3.91435 3.97882 4.02151 4.15040 4.22495 4.26825 4.35419 4.46804 4.53735 4.58688 4.64956 4.73066 4.75255 4.84623 4.86624 4.89231 4.98880 5.01876 5.13980 5.16241 5.25481 5.32684 5.44395 5.51585 5.55560 5.73220 5.83164 5.92207 6.10158 6.46384 6.52925 6.77269 6.82528 7.24510 8.76926 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.004227 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.913649 B = 6623.228820 C = 7204.630087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.072 4.072 4 C -0.174 4.174 5 C -0.077 4.077 6 C -0.189 4.189 7 C -0.081 4.081 8 C -0.215 4.215 9 C 0.205 3.795 10 N -0.744 5.744 11 C 0.139 3.861 12 C 0.043 3.957 13 O -0.407 6.407 14 C 0.209 3.791 15 C -0.548 4.548 16 H 0.058 0.942 17 C 0.009 3.991 18 N -0.929 5.929 19 Si 0.980 3.020 20 H -0.267 1.267 21 H -0.271 1.271 22 H -0.271 1.271 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.125 0.875 34 H 0.398 0.602 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.047 0.953 39 H -0.011 1.011 40 H -0.012 1.012 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.283 -5.999 16.937 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.109 4.109 4 C -0.179 4.179 5 C -0.096 4.096 6 C -0.209 4.209 7 C -0.100 4.100 8 C -0.238 4.238 9 C 0.101 3.899 10 N -0.374 5.374 11 C 0.015 3.985 12 C -0.035 4.035 13 O -0.327 6.327 14 C 0.134 3.866 15 C -0.586 4.586 16 H 0.077 0.923 17 C -0.189 4.189 18 N -0.568 5.568 19 Si 0.803 3.197 20 H -0.191 1.191 21 H -0.196 1.196 22 H -0.196 1.196 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.142 0.858 34 H 0.234 0.766 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.006 0.994 40 H 0.006 0.994 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.319 -5.905 16.705 20.019 hybrid contribution -0.955 0.354 -0.845 1.323 sum 8.365 -5.552 15.860 18.770 Atomic orbital electron populations 1.21795 0.95331 1.02060 1.01865 1.21441 0.95864 0.95717 1.01832 1.20423 0.90810 0.97501 1.02196 1.19562 0.95797 1.10287 0.92245 1.21031 0.94593 0.97172 0.96783 1.21148 0.94120 1.06940 0.98646 1.21151 1.00445 0.96664 0.91729 1.20835 0.91871 1.11378 0.99677 1.17980 0.91955 0.94192 0.85815 1.44836 1.08445 1.81040 1.03070 1.21345 0.93577 1.02049 0.81542 1.22779 0.94354 0.87831 0.98491 1.87854 1.53398 1.36838 1.54583 1.19834 0.85834 0.96449 0.84441 1.21383 1.20192 1.00896 1.16095 0.92337 1.25902 0.97180 1.01691 0.94155 1.70058 1.32502 1.35884 1.18357 0.85179 0.78070 0.77930 0.78500 1.19077 1.19574 1.19571 0.93882 0.92014 0.91668 0.93443 0.91074 0.90014 0.93389 0.84634 0.84468 0.84289 0.85753 0.76621 0.88672 0.92204 0.91653 0.93462 0.99361 0.99435 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.91 71.98 0.71 -2.49 16 2 C -0.11 -2.47 5.92 30.60 0.18 -2.29 16 3 C -0.07 -1.76 4.78 29.85 0.14 -1.62 16 4 C -0.17 -4.54 5.15 -19.73 -0.10 -4.64 16 5 C -0.08 -1.71 9.68 22.25 0.22 -1.50 16 6 C -0.19 -3.86 10.04 22.29 0.22 -3.64 16 7 C -0.08 -1.75 10.04 22.25 0.22 -1.52 16 8 C -0.21 -5.45 9.31 22.40 0.21 -5.24 16 9 C 0.20 5.81 6.63 38.21 0.25 6.07 16 10 N -0.74 -22.69 5.58 -339.42 -1.89 -24.59 16 11 C 0.14 4.01 5.30 86.38 0.46 4.47 16 12 C 0.04 1.50 6.07 71.98 0.44 1.94 16 13 O -0.41 -19.42 10.27 -148.98 -1.53 -20.95 16 14 C 0.21 11.62 5.69 71.24 0.41 12.03 16 15 C -0.55 -32.60 9.43 25.60 0.24 -32.36 16 16 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 17 C 0.01 0.54 5.46 84.65 0.46 1.01 16 18 N -0.93 -55.41 13.29 21.44 0.28 -55.13 16 19 Si 0.98 44.37 29.54 68.60 2.03 46.40 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.75 8.05 -2.39 -0.02 1.73 16 29 H 0.05 1.38 6.82 -2.39 -0.02 1.37 16 30 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 31 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 33 H 0.12 2.88 6.73 -2.91 -0.02 2.86 16 34 H 0.40 13.12 6.58 -92.71 -0.61 12.51 16 35 H 0.10 2.18 7.95 -2.39 -0.02 2.16 16 36 H 0.06 1.79 7.95 -2.39 -0.02 1.77 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 39 H -0.01 -0.66 8.14 -2.39 -0.02 -0.67 16 40 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 41 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -65.64 341.07 3.33 -62.32 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.38 Total: 21.74 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 4.06 Total: -29.79 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -1.61 Total: -79.71 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -1.53 Total: -20.95 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -65.64 3.33 -62.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385270137.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.509 kcal (2) G-P(sol) polarization free energy of solvation -65.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds