Wall clock time and date at job start Mon Mar 30 2020 06:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46907 * 2 1 4 4 C 1.38284 * 119.92601 * 90.00578 * 3 2 1 5 5 C 1.38101 * 120.07653 * 180.02562 * 4 3 2 6 6 C 1.38912 * 119.92501 * 359.97438 * 5 4 3 7 7 N 1.39673 * 120.07610 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00111 * 0.02562 * 7 6 5 9 9 C 1.46504 * 120.00227 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.46883 * 90.00225 * 9 7 6 11 11 O 1.42897 * 109.46881 * 65.00211 * 10 9 7 12 12 C 1.42904 * 114.00084 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47195 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99950 * 0.02562 * 13 12 11 15 15 C 1.37869 * 119.99953 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99765 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00180 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.46960 * 90.00103 * 17 15 13 19 19 H 1.48497 * 109.47151 * 210.00318 * 17 15 13 20 20 H 1.48504 * 109.46674 * 330.00360 * 17 15 13 21 21 C 1.38913 * 119.85192 * 0.25530 * 6 5 4 22 22 C 1.38111 * 119.92221 * 359.48740 * 21 6 5 23 23 H 1.09010 * 109.47207 * 300.00327 * 1 2 3 24 24 H 1.09001 * 109.47294 * 59.99446 * 1 2 3 25 25 H 1.08993 * 109.47573 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46982 * 240.00005 * 2 1 3 27 27 H 1.08998 * 109.46897 * 119.99906 * 2 1 3 28 28 H 1.07997 * 119.96152 * 0.03388 * 4 3 2 29 29 H 1.07995 * 120.04193 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47033 * 269.99798 * 8 7 6 31 31 H 1.09000 * 109.47241 * 29.99616 * 8 7 6 32 32 H 1.09000 * 109.47127 * 149.99375 * 8 7 6 33 33 H 1.09001 * 109.46891 * 330.00659 * 9 7 6 34 34 H 1.08993 * 109.47378 * 210.00031 * 9 7 6 35 35 H 1.08992 * 109.47046 * 185.00109 * 10 9 7 36 36 H 1.08997 * 109.47395 * 305.00649 * 10 9 7 37 37 H 1.08997 * 109.46649 * 300.00180 * 12 11 10 38 38 H 1.08996 * 109.47076 * 59.99959 * 12 11 10 39 39 H 0.97000 * 119.99853 * 179.97438 * 16 15 13 40 40 H 1.07998 * 120.04325 * 179.72671 * 21 6 5 41 41 H 1.07999 * 119.96324 * 180.25535 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0712 1.1985 5 6 2.7221 3.3734 1.2021 6 6 2.9540 4.0298 0.0000 7 7 3.4185 5.3470 0.0000 8 6 3.6623 6.0378 1.2687 9 6 3.6631 6.0376 -1.2688 10 6 2.3878 6.7577 -1.7115 11 8 2.0735 7.7894 -0.7740 12 6 0.8934 8.5280 -1.0965 13 6 0.6593 9.5840 -0.0471 14 1 1.3435 9.6816 0.7828 15 6 -0.4278 10.4261 -0.1470 16 7 -1.2607 10.3074 -1.1579 17 14 -0.7185 11.7346 1.1541 18 1 -0.0257 12.9873 0.7596 19 1 -2.1754 11.9929 1.2794 20 1 -0.1853 11.2634 2.4576 21 6 2.7174 3.3752 -1.2021 22 6 2.2626 2.0711 -1.1986 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0824 1.5602 2.1327 29 1 2.9012 3.8810 2.1384 30 1 2.7535 6.5510 1.5834 31 1 3.9510 5.3114 2.0283 32 1 4.4637 6.7651 1.1383 33 1 3.9523 5.3109 -2.0280 34 1 4.4643 6.7649 -1.1380 35 1 2.5421 7.1970 -2.6970 36 1 1.5647 6.0446 -1.7563 37 1 1.0172 9.0040 -2.0692 38 1 0.0392 7.8518 -1.1289 39 1 -2.0257 10.8996 -1.2280 40 1 2.8924 3.8840 -2.1385 41 1 2.0824 1.5601 -2.1328 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385348668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:49 Heat of formation + Delta-G solvation = -28.278759 kcal Electronic energy + Delta-G solvation = -19462.181790 eV Core-core repulsion = 16534.707903 eV Total energy + Delta-G solvation = -2927.473887 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.59851 -37.30600 -35.92138 -33.26487 -32.67290 -31.13262 -29.66143 -28.56790 -27.06142 -25.39408 -23.45458 -22.34464 -22.20976 -21.56215 -19.91298 -17.26648 -16.44207 -15.97907 -15.42099 -15.22754 -14.89790 -14.40680 -14.36271 -14.02139 -13.90592 -13.34821 -13.23537 -13.06361 -12.94002 -12.37916 -11.99440 -11.93222 -11.76767 -11.71800 -11.28412 -11.11847 -10.88353 -10.83735 -10.81010 -10.69065 -10.46161 -10.12970 -9.38358 -9.12522 -8.84214 -8.73221 -8.18550 -6.93836 -6.12298 -4.14339 1.63358 1.78581 3.28586 3.33658 3.38461 3.39715 4.03903 4.32847 4.79402 4.90997 4.92367 5.13659 5.17663 5.24125 5.33347 5.39536 5.49832 5.54301 5.59383 5.62576 5.68933 5.83879 5.85745 5.89170 5.97547 6.00519 6.06363 6.19310 6.19951 6.28098 6.30247 6.53205 6.61203 6.88111 7.07778 7.09922 7.41750 7.52949 7.75834 7.78943 8.13703 8.56135 8.98553 9.50585 10.99248 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022594 B = 0.003925 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.959730 B = 7132.602467 C = 7459.977561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C -0.156 4.156 4 C -0.069 4.069 5 C -0.199 4.199 6 C 0.224 3.776 7 N -0.618 5.618 8 C 0.100 3.900 9 C 0.127 3.873 10 C 0.042 3.958 11 O -0.391 6.391 12 C 0.197 3.803 13 C -0.514 4.514 14 H 0.065 0.935 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.907 3.093 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.201 4.201 22 C -0.068 4.068 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.003 0.997 38 H 0.003 0.997 39 H 0.264 0.736 40 H 0.120 0.880 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.613 -17.424 1.333 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.158 4.158 4 C -0.087 4.087 5 C -0.222 4.222 6 C 0.121 3.879 7 N -0.327 5.327 8 C -0.043 4.043 9 C 0.004 3.996 10 C -0.037 4.037 11 O -0.310 6.310 12 C 0.122 3.878 13 C -0.552 4.552 14 H 0.083 0.917 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.735 3.265 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.223 4.223 22 C -0.087 4.087 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.139 0.861 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.074 0.926 40 H 0.137 0.863 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.634 -17.083 1.436 19.195 hybrid contribution -0.590 0.860 0.248 1.072 sum 8.044 -16.223 1.684 18.186 Atomic orbital electron populations 1.21776 0.95397 1.01013 1.02297 1.20356 0.95670 0.93117 1.01869 1.19533 1.06361 0.96735 0.93142 1.20685 0.97084 0.93845 0.97122 1.20656 1.08923 0.96072 0.96506 1.17886 0.91982 0.84177 0.93885 1.46411 1.70229 1.09957 1.06066 1.21612 1.01757 0.96175 0.84726 1.21542 0.97152 0.95271 0.85645 1.22772 0.96619 0.91358 0.92975 1.87836 1.47774 1.47078 1.48361 1.20170 0.81348 0.90043 0.96210 1.21030 1.09975 1.15052 1.09163 0.91654 1.24951 0.95523 0.97773 0.96252 1.69967 1.14640 1.38881 1.30237 0.86344 0.77308 0.81333 0.81553 1.20464 1.21053 1.19639 1.20653 1.09149 0.96091 0.96438 1.20687 0.97092 0.93798 0.97137 0.92662 0.92639 0.93016 0.91811 0.91826 0.86729 0.86144 0.92100 0.92389 0.91726 0.90098 0.90221 0.93949 0.94255 0.97903 0.97910 0.92648 0.86257 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 37.16 0.37 -1.03 16 2 C -0.07 -0.70 6.06 -27.88 -0.17 -0.87 16 3 C -0.16 -1.91 5.14 -104.59 -0.54 -2.45 16 4 C -0.07 -0.87 9.69 -39.61 -0.38 -1.26 16 5 C -0.20 -2.81 9.21 -39.38 -0.36 -3.17 16 6 C 0.22 3.40 6.55 -83.79 -0.55 2.85 16 7 N -0.62 -9.57 2.97 -179.61 -0.53 -10.10 16 8 C 0.10 1.46 9.84 59.85 0.59 2.05 16 9 C 0.13 1.88 5.60 -4.04 -0.02 1.86 16 10 C 0.04 0.78 6.28 37.16 0.23 1.01 16 11 O -0.39 -9.33 9.89 -35.23 -0.35 -9.68 16 12 C 0.20 5.45 5.69 36.01 0.20 5.66 16 13 C -0.51 -15.18 9.43 -34.44 -0.32 -15.51 16 14 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 17 Si 0.91 21.90 29.54 -169.99 -5.02 16.88 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.20 -2.82 9.20 -39.38 -0.36 -3.18 16 22 C -0.07 -0.87 9.69 -39.61 -0.38 -1.25 16 23 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.06 0.55 8.08 -51.93 -0.42 0.14 16 28 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 29 H 0.12 1.57 6.14 -52.49 -0.32 1.25 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.71 6.20 -51.93 -0.32 0.39 16 32 H 0.06 0.88 7.89 -51.93 -0.41 0.47 16 33 H 0.08 0.99 6.21 -51.93 -0.32 0.67 16 34 H 0.08 1.12 7.89 -51.93 -0.41 0.71 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 38 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.12 1.55 6.15 -52.49 -0.32 1.22 16 41 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -31.85 338.76 -8.58 -40.43 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.72 Total: -2.50 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -1.80 Total: -13.75 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.20 Total: -36.49 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.35 Total: -9.68 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.85 -8.58 -40.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385348668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.147 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds