Wall clock time and date at job start Mon Mar 30 2020 06:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46907 * 2 1 4 4 C 1.38284 * 119.92601 * 90.00578 * 3 2 1 5 5 C 1.38101 * 120.07653 * 180.02562 * 4 3 2 6 6 C 1.38912 * 119.92501 * 359.97438 * 5 4 3 7 7 N 1.39673 * 120.07610 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00111 * 0.02562 * 7 6 5 9 9 C 1.46504 * 120.00227 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.46883 * 90.00225 * 9 7 6 11 11 O 1.42897 * 109.46881 * 65.00211 * 10 9 7 12 12 C 1.42904 * 114.00084 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47195 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99950 * 0.02562 * 13 12 11 15 15 C 1.37869 * 119.99953 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99765 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00180 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.46960 * 90.00103 * 17 15 13 19 19 H 1.48497 * 109.47151 * 210.00318 * 17 15 13 20 20 H 1.48504 * 109.46674 * 330.00360 * 17 15 13 21 21 C 1.38913 * 119.85192 * 0.25530 * 6 5 4 22 22 C 1.38111 * 119.92221 * 359.48740 * 21 6 5 23 23 H 1.09010 * 109.47207 * 300.00327 * 1 2 3 24 24 H 1.09001 * 109.47294 * 59.99446 * 1 2 3 25 25 H 1.08993 * 109.47573 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46982 * 240.00005 * 2 1 3 27 27 H 1.08998 * 109.46897 * 119.99906 * 2 1 3 28 28 H 1.07997 * 119.96152 * 0.03388 * 4 3 2 29 29 H 1.07995 * 120.04193 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47033 * 269.99798 * 8 7 6 31 31 H 1.09000 * 109.47241 * 29.99616 * 8 7 6 32 32 H 1.09000 * 109.47127 * 149.99375 * 8 7 6 33 33 H 1.09001 * 109.46891 * 330.00659 * 9 7 6 34 34 H 1.08993 * 109.47378 * 210.00031 * 9 7 6 35 35 H 1.08992 * 109.47046 * 185.00109 * 10 9 7 36 36 H 1.08997 * 109.47395 * 305.00649 * 10 9 7 37 37 H 1.08997 * 109.46649 * 300.00180 * 12 11 10 38 38 H 1.08996 * 109.47076 * 59.99959 * 12 11 10 39 39 H 0.97000 * 119.99853 * 179.97438 * 16 15 13 40 40 H 1.07998 * 120.04325 * 179.72671 * 21 6 5 41 41 H 1.07999 * 119.96324 * 180.25535 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0712 1.1985 5 6 2.7221 3.3734 1.2021 6 6 2.9540 4.0298 0.0000 7 7 3.4185 5.3470 0.0000 8 6 3.6623 6.0378 1.2687 9 6 3.6631 6.0376 -1.2688 10 6 2.3878 6.7577 -1.7115 11 8 2.0735 7.7894 -0.7740 12 6 0.8934 8.5280 -1.0965 13 6 0.6593 9.5840 -0.0471 14 1 1.3435 9.6816 0.7828 15 6 -0.4278 10.4261 -0.1470 16 7 -1.2607 10.3074 -1.1579 17 14 -0.7185 11.7346 1.1541 18 1 -0.0257 12.9873 0.7596 19 1 -2.1754 11.9929 1.2794 20 1 -0.1853 11.2634 2.4576 21 6 2.7174 3.3752 -1.2021 22 6 2.2626 2.0711 -1.1986 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0824 1.5602 2.1327 29 1 2.9012 3.8810 2.1384 30 1 2.7535 6.5510 1.5834 31 1 3.9510 5.3114 2.0283 32 1 4.4637 6.7651 1.1383 33 1 3.9523 5.3109 -2.0280 34 1 4.4643 6.7649 -1.1380 35 1 2.5421 7.1970 -2.6970 36 1 1.5647 6.0446 -1.7563 37 1 1.0172 9.0040 -2.0692 38 1 0.0392 7.8518 -1.1289 39 1 -2.0257 10.8996 -1.2280 40 1 2.8924 3.8840 -2.1385 41 1 2.0824 1.5601 -2.1328 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385348668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:49 Heat of formation + Delta-G solvation = -45.815440 kcal Electronic energy + Delta-G solvation = -19462.942238 eV Core-core repulsion = 16534.707903 eV Total energy + Delta-G solvation = -2928.234335 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.66207 -38.83369 -37.32857 -34.97717 -34.09645 -32.26124 -31.00553 -29.59194 -29.10274 -26.58633 -24.71548 -24.35748 -23.24118 -22.70357 -20.96481 -18.70456 -18.39548 -17.29535 -17.19191 -16.42771 -16.29774 -16.05460 -15.72642 -15.14401 -15.11843 -14.71257 -14.42837 -14.10618 -14.06225 -13.72829 -13.45442 -13.33971 -13.09135 -12.86088 -12.77579 -12.66746 -12.55638 -12.37117 -12.05981 -11.91457 -11.70765 -11.46532 -11.30446 -10.90970 -10.50592 -10.25597 -9.76252 -8.35224 -8.06337 -6.48069 0.60104 0.74672 1.37598 1.40748 1.52651 2.25850 2.32407 2.98766 2.99444 3.18150 3.94601 4.04483 4.07517 4.18554 4.21756 4.31579 4.42209 4.49331 4.56824 4.59222 4.61205 4.63942 4.75124 4.79352 4.81142 4.90612 5.02102 5.03468 5.12357 5.14171 5.15045 5.24308 5.44461 5.47978 5.51171 5.60680 5.90086 5.92153 6.08844 6.38966 6.48867 6.66823 6.78815 7.24141 8.77448 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022594 B = 0.003925 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.959730 B = 7132.602467 C = 7459.977561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 C -0.155 4.155 4 C -0.076 4.076 5 C -0.212 4.212 6 C 0.198 3.802 7 N -0.629 5.629 8 C 0.103 3.897 9 C 0.135 3.865 10 C 0.035 3.965 11 O -0.399 6.399 12 C 0.212 3.788 13 C -0.547 4.547 14 H 0.063 0.937 15 C 0.005 3.995 16 N -0.932 5.932 17 Si 0.984 3.016 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.264 1.264 21 C -0.212 4.212 22 C -0.076 4.076 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.135 0.865 29 H 0.124 0.876 30 H 0.025 0.975 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.026 0.974 37 H -0.015 1.015 38 H -0.025 1.025 39 H 0.271 0.729 40 H 0.126 0.874 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.130 -18.314 2.016 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.157 4.157 4 C -0.095 4.095 5 C -0.234 4.234 6 C 0.096 3.904 7 N -0.339 5.339 8 C -0.040 4.040 9 C 0.012 3.988 10 C -0.044 4.044 11 O -0.318 6.318 12 C 0.137 3.863 13 C -0.584 4.584 14 H 0.081 0.919 15 C -0.193 4.193 16 N -0.571 5.571 17 Si 0.807 3.193 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.188 1.188 21 C -0.235 4.235 22 C -0.095 4.095 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.153 0.847 29 H 0.142 0.858 30 H 0.044 0.956 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.003 0.997 38 H -0.008 1.008 39 H 0.080 0.920 40 H 0.143 0.857 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.164 -18.009 2.111 20.316 hybrid contribution -0.770 0.990 -0.023 1.255 sum 8.393 -17.019 2.088 19.091 Atomic orbital electron populations 1.21766 0.95252 1.01983 1.01407 1.20409 0.95654 0.91539 1.03212 1.19924 1.05042 0.97992 0.92790 1.20993 0.96591 0.93490 0.98382 1.20866 1.09244 0.96846 0.96489 1.18154 0.93167 0.84299 0.94757 1.46491 1.70926 1.10286 1.06160 1.21562 1.00267 0.96778 0.85352 1.21552 0.94948 0.95815 0.86497 1.23118 0.98283 0.90041 0.92915 1.87806 1.45872 1.48107 1.50046 1.19761 0.81877 0.89545 0.95103 1.21363 1.10900 1.16360 1.09785 0.91888 1.25995 0.94707 0.99983 0.98625 1.70080 1.15091 1.39901 1.32023 0.85168 0.77677 0.78090 0.78395 1.19064 1.19998 1.18805 1.20863 1.09369 0.96818 0.96410 1.21003 0.96598 0.93489 0.98378 0.93537 0.93558 0.91156 0.90494 0.90506 0.84714 0.85766 0.95642 0.90174 0.90854 0.87070 0.89201 0.92780 0.95544 0.99708 1.00751 0.92039 0.85651 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.89 71.98 0.71 -1.77 16 2 C -0.07 -1.19 6.06 29.85 0.18 -1.01 16 3 C -0.16 -3.54 5.14 -19.84 -0.10 -3.65 16 4 C -0.08 -1.83 9.69 22.25 0.22 -1.62 16 5 C -0.21 -5.88 9.21 22.40 0.21 -5.67 16 6 C 0.20 5.94 6.55 38.22 0.25 6.19 16 7 N -0.63 -19.37 2.97 -722.18 -2.15 -21.52 16 8 C 0.10 3.05 9.84 127.77 1.26 4.30 16 9 C 0.14 3.92 5.60 86.38 0.48 4.40 16 10 C 0.03 1.32 6.28 71.98 0.45 1.77 16 11 O -0.40 -19.62 9.89 -148.98 -1.47 -21.10 16 12 C 0.21 12.26 5.69 71.24 0.41 12.67 16 13 C -0.55 -33.02 9.43 25.60 0.24 -32.78 16 14 H 0.06 3.74 7.81 -2.91 -0.02 3.72 16 15 C 0.01 0.31 5.46 84.65 0.46 0.77 16 16 N -0.93 -56.98 13.29 21.44 0.28 -56.69 16 17 Si 0.98 44.75 29.54 68.60 2.03 46.78 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 21 C -0.21 -5.80 9.20 22.40 0.21 -5.59 16 22 C -0.08 -1.83 9.69 22.25 0.22 -1.61 16 23 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 27 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 28 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 29 H 0.12 3.21 6.14 -2.91 -0.02 3.19 16 30 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.94 6.20 -2.39 -0.01 1.92 16 32 H 0.07 1.98 7.89 -2.39 -0.02 1.96 16 33 H 0.11 2.55 6.21 -2.39 -0.01 2.53 16 34 H 0.09 2.42 7.89 -2.39 -0.02 2.41 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 37 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 38 H -0.03 -1.56 8.14 -2.39 -0.02 -1.58 16 39 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 40 H 0.13 3.13 6.15 -2.91 -0.02 3.12 16 41 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -69.29 338.76 4.86 -64.42 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.98 Total: 11.69 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 5.19 Total: -23.59 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -1.86 Total: -78.21 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -1.47 Total: -21.10 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -69.29 4.86 -64.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385348668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.607 kcal (2) G-P(sol) polarization free energy of solvation -69.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds