Wall clock time and date at job start Mon Mar 30 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00309 * 2 1 4 4 H 1.48492 * 109.47342 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46855 * 300.00460 * 3 2 1 6 6 H 1.48501 * 109.46865 * 60.00264 * 3 2 1 7 7 C 1.37874 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00329 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00255 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47668 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47658 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47658 * 179.97438 * 11 10 9 13 13 O 1.42899 * 109.47265 * 180.02562 * 12 11 10 14 14 C 1.42905 * 113.99785 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46735 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.46626 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 14 18 18 C 1.38654 * 120.79058 * 269.72060 * 17 16 15 19 19 C 1.38199 * 119.16218 * 179.80010 * 18 17 16 20 20 N 1.31872 * 120.76598 * 0.48658 * 19 18 17 21 21 C 1.31867 * 121.72568 * 359.73700 * 20 19 18 22 22 C 1.38211 * 120.76480 * 0.03137 * 21 20 19 23 23 H 0.97004 * 119.99830 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46972 * 60.00057 * 9 7 2 25 25 H 1.08999 * 109.46948 * 300.00550 * 9 7 2 26 26 H 1.08997 * 109.47096 * 59.99865 * 10 9 7 27 27 H 1.09010 * 109.46475 * 300.00401 * 10 9 7 28 28 H 1.09000 * 109.46843 * 59.99261 * 11 10 9 29 29 H 1.09004 * 109.47214 * 300.00390 * 11 10 9 30 30 H 1.08997 * 109.47096 * 59.99677 * 12 11 10 31 31 H 1.09005 * 109.46515 * 299.99729 * 12 11 10 32 32 H 1.08993 * 109.47057 * 59.99308 * 14 13 12 33 33 H 1.09000 * 109.46838 * 299.99546 * 14 13 12 34 34 H 1.08993 * 109.47839 * 59.99877 * 15 14 13 35 35 H 1.09000 * 109.47160 * 299.99439 * 15 14 13 36 36 H 1.09000 * 109.47050 * 299.99699 * 16 15 14 37 37 H 1.09001 * 109.46801 * 59.99811 * 16 15 14 38 38 H 1.08000 * 120.41963 * 359.97438 * 18 17 16 39 39 H 1.08005 * 119.61842 * 180.20536 * 19 18 17 40 40 H 1.07994 * 119.62246 * 180.02562 * 21 20 19 41 41 H 1.07996 * 120.41847 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 8 1.7597 -7.3876 -0.0030 14 6 2.5997 -8.5438 -0.0031 15 6 1.7323 -9.8041 -0.0038 16 6 2.6317 -11.0420 -0.0046 17 6 1.7774 -12.2835 -0.0046 18 6 1.3804 -12.8719 1.1865 19 6 0.5937 -14.0074 1.1472 20 7 0.2292 -14.5360 -0.0046 21 6 0.5919 -14.0062 -1.1564 22 6 1.3747 -12.8678 -1.1957 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8896 26 1 2.8717 -3.6044 0.8894 27 1 2.8718 -3.6043 -0.8906 28 1 0.8537 -5.0445 -0.8913 29 1 0.8531 -5.0451 0.8886 30 1 3.1010 -6.0928 0.8881 31 1 3.1008 -6.0919 -0.8919 32 1 3.2284 -8.5361 0.8872 33 1 3.2295 -8.5352 -0.8927 34 1 1.1033 -9.8120 -0.8939 35 1 1.1029 -9.8125 0.8860 36 1 3.2609 -11.0334 -0.8946 37 1 3.2610 -11.0343 0.8854 38 1 1.6798 -12.4465 2.1330 39 1 0.2774 -14.4698 2.0706 40 1 0.2737 -14.4672 -2.0798 41 1 1.6681 -12.4384 -2.1422 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385369522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:41 Heat of formation + Delta-G solvation = -51.371399 kcal Electronic energy + Delta-G solvation = -17956.048314 eV Core-core repulsion = 15027.573055 eV Total energy + Delta-G solvation = -2928.475259 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.51999 -38.16154 -35.66358 -34.51352 -32.46419 -31.55401 -31.50600 -28.73864 -26.57871 -24.59864 -23.81942 -22.77422 -21.86615 -21.30325 -20.01937 -17.14443 -16.90180 -16.24391 -16.23311 -16.18352 -15.91439 -14.85311 -14.71499 -14.43577 -14.12741 -14.06009 -13.57317 -13.06349 -12.73925 -12.48917 -12.38906 -11.94763 -11.81165 -11.43659 -11.27568 -11.07418 -10.98576 -10.65179 -10.51166 -10.40663 -9.89866 -9.82352 -9.68021 -9.51820 -9.49048 -9.31074 -9.02797 -8.33809 -5.98513 -4.00943 0.77554 0.87362 3.31418 3.38591 3.40521 3.42874 3.68534 4.11376 4.27364 4.32860 4.47171 4.71296 4.71694 4.80197 4.94044 5.00694 5.12461 5.23980 5.29049 5.35722 5.37613 5.37783 5.42154 5.54207 5.65496 5.73690 5.76057 5.89485 6.02166 6.10886 6.15696 6.34582 6.47521 6.78247 6.91972 7.10040 7.35185 7.62186 7.70213 7.84919 8.02232 8.44415 9.06639 9.62971 11.12885 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.062867 B = 0.002010 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.277698 B =13925.482002 C =14045.565671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.108 4.108 11 C -0.117 4.117 12 C 0.064 3.936 13 O -0.391 6.391 14 C 0.062 3.938 15 C -0.112 4.112 16 C -0.082 4.082 17 C -0.034 4.034 18 C -0.171 4.171 19 C 0.099 3.901 20 N -0.492 5.492 21 C 0.099 3.901 22 C -0.171 4.171 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.135 0.865 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.296 -27.345 -0.008 27.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.012 4.012 13 O -0.310 6.310 14 C -0.015 4.015 15 C -0.150 4.150 16 C -0.119 4.119 17 C -0.042 4.042 18 C -0.190 4.190 19 C -0.058 4.058 20 N -0.201 5.201 21 C -0.058 4.058 22 C -0.190 4.190 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.153 0.847 39 H 0.172 0.828 40 H 0.172 0.828 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.433 -27.988 -0.008 28.337 hybrid contribution 1.241 1.766 0.001 2.158 sum 5.674 -26.222 -0.007 26.829 Atomic orbital electron populations 1.69980 1.06051 1.26451 1.50987 1.25044 0.94865 0.99288 0.95413 0.86538 0.80078 0.83823 0.77567 1.19774 1.21023 1.21020 1.21312 0.93062 0.91136 1.50359 0.92661 1.19099 0.94012 0.91205 0.97350 1.21577 0.99187 0.93473 1.00292 1.21642 0.98105 0.92927 1.02767 1.22694 0.95388 0.83488 0.99663 1.87889 1.34046 1.13686 1.95407 1.22409 0.93152 0.85906 1.00040 1.21459 0.98278 0.91318 1.03944 1.20581 0.96824 0.90662 1.03819 1.20300 0.95369 0.95418 0.93146 1.22100 1.00298 0.97747 0.98890 1.22782 0.93813 0.92868 0.96305 1.67682 1.21562 1.32232 0.98631 1.22782 0.93834 0.92846 0.96305 1.22102 1.00296 0.97744 0.98894 0.93068 0.96515 0.96527 0.93334 0.93341 0.91702 0.91699 0.93633 0.93639 0.93508 0.93503 0.90805 0.90800 0.90171 0.90179 0.84701 0.82754 0.82755 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.23 5.15 -26.74 -0.14 -2.37 16 11 C -0.12 -2.08 5.58 -26.74 -0.15 -2.23 16 12 C 0.06 0.94 5.94 37.16 0.22 1.16 16 13 O -0.39 -5.69 10.34 -35.23 -0.36 -6.05 16 14 C 0.06 0.64 5.94 37.16 0.22 0.86 16 15 C -0.11 -0.98 5.57 -26.73 -0.15 -1.13 16 16 C -0.08 -0.53 5.39 -27.88 -0.15 -0.68 16 17 C -0.03 -0.26 5.17 -104.32 -0.54 -0.80 16 18 C -0.17 -1.25 9.82 -39.44 -0.39 -1.64 16 19 C 0.10 0.80 11.18 -17.55 -0.20 0.60 16 20 N -0.49 -4.79 10.36 -13.25 -0.14 -4.92 16 21 C 0.10 0.80 11.18 -17.55 -0.20 0.60 16 22 C -0.17 -1.26 9.82 -39.44 -0.39 -1.64 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 37 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 38 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 40 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 347.33 15.07 5.23 5.23 Total: -1.00 -32.65 347.33 -9.10 -41.75 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -7.15 Total: -5.59 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -2.40 Total: -20.65 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.60 Total: -31.49 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.36 Total: -6.05 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.65 -9.10 -41.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385369522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.622 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds