Wall clock time and date at job start Mon Mar 30 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00309 * 2 1 4 4 H 1.48492 * 109.47342 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46855 * 300.00460 * 3 2 1 6 6 H 1.48501 * 109.46865 * 60.00264 * 3 2 1 7 7 C 1.37874 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00329 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00255 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47668 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47658 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47658 * 179.97438 * 11 10 9 13 13 O 1.42899 * 109.47265 * 180.02562 * 12 11 10 14 14 C 1.42905 * 113.99785 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46735 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.46626 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 14 18 18 C 1.38654 * 120.79058 * 269.72060 * 17 16 15 19 19 C 1.38199 * 119.16218 * 179.80010 * 18 17 16 20 20 N 1.31872 * 120.76598 * 0.48658 * 19 18 17 21 21 C 1.31867 * 121.72568 * 359.73700 * 20 19 18 22 22 C 1.38211 * 120.76480 * 0.03137 * 21 20 19 23 23 H 0.97004 * 119.99830 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46972 * 60.00057 * 9 7 2 25 25 H 1.08999 * 109.46948 * 300.00550 * 9 7 2 26 26 H 1.08997 * 109.47096 * 59.99865 * 10 9 7 27 27 H 1.09010 * 109.46475 * 300.00401 * 10 9 7 28 28 H 1.09000 * 109.46843 * 59.99261 * 11 10 9 29 29 H 1.09004 * 109.47214 * 300.00390 * 11 10 9 30 30 H 1.08997 * 109.47096 * 59.99677 * 12 11 10 31 31 H 1.09005 * 109.46515 * 299.99729 * 12 11 10 32 32 H 1.08993 * 109.47057 * 59.99308 * 14 13 12 33 33 H 1.09000 * 109.46838 * 299.99546 * 14 13 12 34 34 H 1.08993 * 109.47839 * 59.99877 * 15 14 13 35 35 H 1.09000 * 109.47160 * 299.99439 * 15 14 13 36 36 H 1.09000 * 109.47050 * 299.99699 * 16 15 14 37 37 H 1.09001 * 109.46801 * 59.99811 * 16 15 14 38 38 H 1.08000 * 120.41963 * 359.97438 * 18 17 16 39 39 H 1.08005 * 119.61842 * 180.20536 * 19 18 17 40 40 H 1.07994 * 119.62246 * 180.02562 * 21 20 19 41 41 H 1.07996 * 120.41847 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 8 1.7597 -7.3876 -0.0030 14 6 2.5997 -8.5438 -0.0031 15 6 1.7323 -9.8041 -0.0038 16 6 2.6317 -11.0420 -0.0046 17 6 1.7774 -12.2835 -0.0046 18 6 1.3804 -12.8719 1.1865 19 6 0.5937 -14.0074 1.1472 20 7 0.2292 -14.5360 -0.0046 21 6 0.5919 -14.0062 -1.1564 22 6 1.3747 -12.8678 -1.1957 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8896 26 1 2.8717 -3.6044 0.8894 27 1 2.8718 -3.6043 -0.8906 28 1 0.8537 -5.0445 -0.8913 29 1 0.8531 -5.0451 0.8886 30 1 3.1010 -6.0928 0.8881 31 1 3.1008 -6.0919 -0.8919 32 1 3.2284 -8.5361 0.8872 33 1 3.2295 -8.5352 -0.8927 34 1 1.1033 -9.8120 -0.8939 35 1 1.1029 -9.8125 0.8860 36 1 3.2609 -11.0334 -0.8946 37 1 3.2610 -11.0343 0.8854 38 1 1.6798 -12.4465 2.1330 39 1 0.2774 -14.4698 2.0706 40 1 0.2737 -14.4672 -2.0798 41 1 1.6681 -12.4384 -2.1422 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385369522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:40 Heat of formation + Delta-G solvation = -69.641321 kcal Electronic energy + Delta-G solvation = -17956.840557 eV Core-core repulsion = 15027.573055 eV Total energy + Delta-G solvation = -2929.267502 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07555 -39.18705 -36.68440 -35.94368 -34.32837 -32.37319 -32.09311 -30.41110 -27.48769 -26.28597 -24.36896 -23.47475 -23.39731 -22.11435 -21.64228 -18.44146 -17.82254 -17.58518 -17.15453 -17.07109 -16.52324 -16.43237 -15.99993 -15.57887 -14.89146 -14.85308 -14.46667 -14.44950 -13.84915 -13.67085 -13.56992 -13.27242 -12.91406 -12.80993 -12.63635 -12.33633 -12.26046 -12.24320 -11.83834 -11.71344 -11.42516 -11.32639 -11.08432 -10.56854 -10.50742 -10.47712 -10.40871 -10.06552 -8.20257 -6.31937 0.22675 0.30115 1.40258 1.40772 1.54315 2.40525 2.65290 2.92943 3.12708 3.60360 3.68935 3.82084 4.06198 4.10619 4.13365 4.19717 4.27317 4.32525 4.39399 4.47020 4.54851 4.54981 4.63287 4.69485 4.73132 4.84094 4.90628 4.91673 5.07475 5.10827 5.17259 5.22698 5.27073 5.30607 5.47381 5.53432 5.75250 5.81981 5.85744 6.24116 6.32985 6.85964 7.05333 7.37586 8.92013 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.062867 B = 0.002010 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.277698 B =13925.482002 C =14045.565671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.111 4.111 12 C 0.073 3.927 13 O -0.415 6.415 14 C 0.055 3.945 15 C -0.106 4.106 16 C -0.072 4.072 17 C -0.045 4.045 18 C -0.175 4.175 19 C 0.084 3.916 20 N -0.523 5.523 21 C 0.084 3.916 22 C -0.175 4.175 23 H 0.263 0.737 24 H -0.010 1.010 25 H -0.011 1.011 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.153 0.847 39 H 0.172 0.828 40 H 0.172 0.828 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.399 -27.508 -0.007 28.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.017 4.017 10 C -0.132 4.132 11 C -0.149 4.149 12 C -0.004 4.004 13 O -0.336 6.336 14 C -0.021 4.021 15 C -0.144 4.144 16 C -0.109 4.109 17 C -0.053 4.053 18 C -0.194 4.194 19 C -0.072 4.072 20 N -0.232 5.232 21 C -0.072 4.072 22 C -0.194 4.194 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.008 0.992 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.171 0.829 39 H 0.189 0.811 40 H 0.189 0.811 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.549 -28.174 -0.007 28.925 hybrid contribution 0.533 1.765 0.001 1.844 sum 7.083 -26.408 -0.007 27.342 Atomic orbital electron populations 1.70120 1.07925 1.27728 1.51807 1.26060 0.95824 1.03631 0.94770 0.85342 0.79106 0.78492 0.77752 1.18343 1.20398 1.20388 1.21770 0.93695 0.92327 1.50327 0.91849 1.19040 0.94570 0.93336 0.94724 1.21355 0.98011 0.92731 1.01104 1.21472 0.98408 0.93183 1.01842 1.22475 0.94185 0.82689 1.01006 1.87843 1.35557 1.14517 1.95645 1.22667 0.93277 0.84715 1.01408 1.21397 0.98285 0.91726 1.02980 1.20526 0.96343 0.88882 1.05173 1.20526 0.95579 0.95862 0.93335 1.22347 0.99840 0.97466 0.99763 1.23150 0.94067 0.93379 0.96619 1.67681 1.22664 1.33346 0.99557 1.23150 0.94086 0.93355 0.96620 1.22349 0.99837 0.97468 0.99766 0.92785 0.99205 0.99216 0.92415 0.92424 0.92699 0.92693 0.92253 0.92264 0.92079 0.92072 0.91811 0.91809 0.88838 0.88846 0.82930 0.81092 0.81094 0.82935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.00 13.29 21.45 0.28 -57.71 16 2 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 3 Si 0.97 44.54 29.54 68.60 2.03 46.56 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.54 -31.36 9.11 25.60 0.23 -31.13 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.10 4.97 29.85 0.15 1.25 16 10 C -0.09 -3.87 5.15 30.59 0.16 -3.71 16 11 C -0.11 -3.93 5.58 30.59 0.17 -3.76 16 12 C 0.07 2.00 5.94 71.98 0.43 2.43 16 13 O -0.42 -11.43 10.34 -148.98 -1.54 -12.97 16 14 C 0.06 1.01 5.94 71.98 0.43 1.44 16 15 C -0.11 -1.67 5.57 30.60 0.17 -1.50 16 16 C -0.07 -0.77 5.39 29.85 0.16 -0.61 16 17 C -0.04 -0.61 5.17 -19.67 -0.10 -0.71 16 18 C -0.17 -2.35 9.82 22.36 0.22 -2.13 16 19 C 0.08 1.31 11.18 84.68 0.95 2.25 16 20 N -0.52 -10.05 10.36 -195.84 -2.03 -12.08 16 21 C 0.08 1.31 11.18 84.68 0.95 2.25 16 22 C -0.17 -2.35 9.82 22.36 0.22 -2.13 16 23 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 24 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 25 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 26 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.09 0.77 8.10 -2.39 -0.02 0.75 16 37 H 0.09 0.77 8.10 -2.39 -0.02 0.75 16 38 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 39 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -70.57 347.33 4.29 -66.27 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 0.96 Total: 5.84 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 4.59 Total: -35.91 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -1.74 Total: -69.79 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -1.54 Total: -12.97 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -70.57 4.29 -66.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385369522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.367 kcal (2) G-P(sol) polarization free energy of solvation -70.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds